##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781177_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 193921 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4248946736042 34.0 33.0 34.0 23.0 34.0 2 31.597470103805158 34.0 33.0 34.0 24.0 34.0 3 31.52988588136406 34.0 34.0 34.0 23.0 34.0 4 31.72094306444377 34.0 34.0 34.0 23.0 34.0 5 31.717090980347667 34.0 34.0 34.0 23.0 34.0 6 34.585372393912984 38.0 35.0 38.0 26.0 38.0 7 34.50880513198674 38.0 34.0 38.0 25.0 38.0 8 34.386172719818894 38.0 34.0 38.0 25.0 38.0 9 34.607350415891005 38.0 35.0 38.0 26.0 38.0 10-11 34.47409512120915 38.0 34.5 38.0 25.5 38.0 12-13 34.43337493102862 38.0 34.0 38.0 25.5 38.0 14-15 34.30767683747506 38.0 34.0 38.0 24.0 38.0 16-17 34.25456500327453 37.5 34.0 38.0 24.5 38.0 18-19 34.319031976939065 37.5 34.0 38.0 24.5 38.0 20-21 34.22708989743246 37.5 34.0 38.0 24.5 38.0 22-23 34.288207569061626 37.5 34.0 38.0 24.5 38.0 24-25 34.27950815022612 37.5 34.0 38.0 24.0 38.0 26-27 34.18990723026387 37.0 34.0 38.0 24.0 38.0 28-29 34.27486192831101 37.5 34.0 38.0 24.0 38.0 30-31 34.336838196997746 38.0 34.0 38.0 24.5 38.0 32-33 34.2893961974206 37.5 34.0 38.0 24.5 38.0 34-35 34.32881431098231 38.0 34.0 38.0 24.5 38.0 36-37 34.1976861711728 37.0 34.0 38.0 24.0 38.0 38-39 34.20182445428809 37.0 34.0 38.0 24.0 38.0 40-41 34.213177015382556 37.0 34.0 38.0 24.0 38.0 42-43 34.252035622753596 37.0 34.0 38.0 24.0 38.0 44-45 34.26606968817198 37.0 34.0 38.0 24.0 38.0 46-47 34.24839496495996 37.0 34.0 38.0 24.0 38.0 48-49 34.24094863372198 37.0 34.0 38.0 24.0 38.0 50-51 34.09775888119388 37.0 34.0 38.0 23.5 38.0 52-53 34.18363147879806 37.0 34.0 38.0 24.0 38.0 54-55 34.148011303572076 37.0 34.0 38.0 24.0 38.0 56-57 34.12184600945746 37.0 34.0 38.0 24.0 38.0 58-59 34.12407629911149 37.0 34.0 38.0 24.0 38.0 60-61 34.0936515385131 37.0 34.0 38.0 24.0 38.0 62-63 34.05717276622954 37.0 34.0 38.0 23.5 38.0 64-65 34.082224204701916 37.0 34.0 38.0 24.0 38.0 66-67 33.97665286379505 37.0 34.0 38.0 23.0 38.0 68-69 33.768555236410705 37.0 34.0 38.0 22.5 38.0 70-71 33.91634480020215 37.0 34.0 38.0 23.0 38.0 72-73 33.87943286183549 37.0 34.0 38.0 23.0 38.0 74-75 33.89679818070245 37.0 34.0 38.0 23.0 38.0 76 32.52934958049928 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 28.0 14 107.0 15 304.0 16 688.0 17 1178.0 18 1473.0 19 1623.0 20 1490.0 21 1499.0 22 1551.0 23 1749.0 24 1949.0 25 2341.0 26 2807.0 27 3345.0 28 4045.0 29 4887.0 30 5904.0 31 7230.0 32 8986.0 33 10911.0 34 14165.0 35 19485.0 36 29856.0 37 66317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.77151520464519 17.405541431820172 9.037700919446578 25.78524244408806 2 23.98554050360714 19.51361636955255 31.16733102655205 25.333512100288264 3 20.157177407294725 21.290112984153343 28.57142857142857 29.981281037123363 4 14.314592024587332 15.417102840847562 36.23021745968719 34.038087674877914 5 14.466200153670824 33.49972411445898 35.17257027346187 16.86150545840832 6 31.41897989387431 36.271471372362974 17.353458367067002 14.956090366695715 7 30.344831142578677 28.09443020611486 21.760923262565683 19.799815388740775 8 26.694891218589014 33.16608309569361 19.015991047900947 21.123034637816428 9 24.959648516664 14.921024540921305 20.462456361095498 39.6568705813192 10-11 26.136416375740634 23.45465421486069 27.081130976016006 23.327798433382664 12-13 26.0923262565684 21.973380912845954 25.953609975196084 25.980682855389563 14-15 24.327690141861893 23.24683762975645 23.279582922942847 29.14588930543881 16-17 24.88126608258002 25.92060684505546 24.277927609696732 24.92019946266779 18-19 23.953826558237633 25.513482294336352 25.83062174803141 24.7020693993946 20-21 24.180207404045976 25.64549481489885 25.418082621273612 24.75621515978156 22-23 24.43340329309358 25.136008993352966 25.80767425910551 24.622913454447946 24-25 23.864872809030484 25.445929012329767 25.726713455479295 24.962484723160465 26-27 23.401539802290625 25.60501441308574 26.047204789579258 24.946240995044374 28-29 24.08790177443392 25.052211983230283 26.779977413482808 24.079908828852986 30-31 24.32201772886897 25.376570871643604 25.71304809690544 24.58836330258198 32-33 23.655509202200896 25.917770638559002 25.636728358455247 24.789991800784854 34-35 24.511012216314892 24.762145409728703 26.16503627765946 24.561806096296944 36-37 24.470789651456005 24.664940877986396 25.65606613002202 25.20820334053558 38-39 23.748846179629847 25.413957230006034 26.19855508170853 24.63864150865559 40-41 24.018543633747765 24.50224575987129 26.867384140964617 24.61182646541633 42-43 23.629983343732757 24.783545876929264 26.555143589399805 25.031327189938168 44-45 23.129521815584695 24.723985540503605 26.857844173658346 25.28864847025335 46-47 23.269527281728124 24.642766899923167 26.887753260348283 25.199952558000422 48-49 22.875036741765978 24.528287292247875 27.37970616900697 25.216969796979182 50-51 22.83249364431908 24.596871922071358 27.226035344289684 25.344599089319882 52-53 22.720850243140248 24.404267717266308 27.714120698635007 25.16076134095843 54-55 22.03655096663074 24.764465942316715 27.843554849655273 25.35542824139727 56-57 21.877320544554454 25.020884900990097 27.398927392739274 25.70286716171617 58-59 22.198071369636963 24.570699257425744 27.37108085808581 25.860148514851485 60-61 21.835808580858085 24.468079620462046 27.516501650165015 26.179610148514854 62-63 21.32967202970297 24.340965346534656 27.984220297029704 26.345142326732674 64-65 22.170998349834985 24.54775165016502 27.046462458745875 26.23478754125412 66-67 21.992832095709574 24.52145214521452 26.631600660066006 26.854115099009903 68-69 21.99618399339934 24.68878919141914 26.484375 26.83065181518152 70-71 22.331831858931885 24.464664643500818 26.716876245677994 26.486627251889306 72-73 22.251586986453244 24.491674444748117 26.370016656267243 26.886721912531392 74-75 22.20265521180071 24.900410219651867 26.257409608576708 26.63952495997071 76 22.627771102665516 24.833824083002874 25.836809834932783 26.70159497939883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 1.0 8 1.0 9 0.5 10 0.5 11 1.5 12 2.0 13 1.5 14 5.5 15 11.5 16 24.5 17 36.0 18 37.5 19 51.0 20 84.5 21 106.0 22 141.0 23 227.0 24 359.0 25 440.0 26 562.5 27 732.5 28 992.5 29 1205.0 30 1354.0 31 1717.5 32 2423.0 33 2914.0 34 3282.0 35 4019.5 36 5068.5 37 5748.0 38 6171.5 39 7444.5 40 9095.5 41 10088.0 42 10279.0 43 10663.0 44 11282.5 45 11627.0 46 11736.0 47 11401.0 48 10620.0 49 9818.0 50 9462.0 51 8661.0 52 7133.0 53 6128.0 54 5850.0 55 5519.0 56 4852.0 57 4229.0 58 3942.0 59 3661.0 60 3237.5 61 2949.0 62 2803.0 63 2707.5 64 2526.5 65 2445.0 66 2383.0 67 2317.0 68 2204.0 69 2134.5 70 2095.5 71 2013.0 72 1939.0 73 1830.5 74 1713.5 75 1631.0 76 1486.0 77 1221.5 78 988.5 79 875.0 80 777.0 81 601.5 82 450.0 83 376.0 84 310.5 85 194.0 86 107.0 87 71.0 88 55.0 89 33.0 90 17.0 91 6.0 92 5.0 93 3.5 94 1.5 95 2.5 96 4.0 97 2.0 98 1.0 99 3.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 5.156739084472543E-4 58-59 5.156739084472543E-4 60-61 5.156739084472543E-4 62-63 5.156739084472543E-4 64-65 5.156739084472543E-4 66-67 5.156739084472543E-4 68-69 5.156739084472543E-4 70-71 2.5783695422362715E-4 72-73 0.0 74-75 2.5783695422362715E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 193921.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.093914278268 #Duplication Level Percentage of deduplicated Percentage of total 1 72.12099919874456 37.57065149922434 2 14.354999840517715 14.956162623129613 3 5.44499993950672 8.509540802815124 4 2.24800107043702 4.6842870024320336 5 1.1900000020924777 3.0995879050072133 6 0.7559999918577938 2.362979926212673 7 0.6119999932062444 2.2317032629070686 8 0.4739999947340304 1.9754012074859253 9 0.3909999956560405 1.8331848230858039 >10 2.3769999735918224 21.766920900203683 >50 0.03099999965559381 1.0095800474965233 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001547021725341763 0.0 2 0.0 0.0 0.0 0.001547021725341763 0.0 3 0.0 0.0 0.0 0.001547021725341763 0.0 4 0.0 0.0 0.0 0.002062695633789017 0.0 5 0.0 0.0 0.0 0.0025783695422362716 0.0 6 0.0 0.0 0.0 0.0025783695422362716 0.0 7 0.0 0.0 0.0 0.0025783695422362716 0.0 8 0.0 0.0 0.0 0.0025783695422362716 0.0 9 0.0 0.0 0.0 0.003094043450683526 0.0 10 0.0 0.0 0.0 0.00360971735913078 0.0 11 0.0 0.0 0.0 0.004125391267578034 0.0 12 0.0 0.0 0.0 0.004125391267578034 0.0 13 0.0 0.0 0.0 0.004125391267578034 0.0 14 0.0 0.0 0.0 0.004125391267578034 0.0 15 0.0 0.0 0.0 0.004125391267578034 0.0 16 0.0 0.0 0.0 0.004641065176025289 0.0 17 0.0 0.0 0.0 0.005156739084472543 0.0 18 0.0 0.0 0.0 0.005156739084472543 0.0 19 0.0 0.0 0.0 0.0056724129929197975 0.0 20 0.0 0.0 0.0 0.0056724129929197975 0.0 21 0.0 0.0 0.0 0.0056724129929197975 0.0 22 0.0 0.0 0.0 0.01082915207739234 0.0 23 0.0 0.0 0.0 0.011344825985839595 0.0 24 0.0 0.0 0.0 0.013407521619628611 0.0 25 0.0 0.0 0.0 0.013407521619628611 0.0 26 0.0 0.0 0.0 0.013407521619628611 0.0 27 0.0 0.0 0.0 0.02526802151391546 0.0 28 0.0 0.0 0.0 0.037644195316649566 0.0 29 0.0 0.0 0.0 0.05208306475317268 0.0 30 0.0 0.0 0.0 0.06136519510522326 0.0 31 0.0 0.0 0.0 0.07941378190087717 0.0 32 0.0 0.0 0.0 0.10880719468237066 0.0 33 0.0 0.0 0.0 0.150061107358151 0.0 34 0.0 0.0 0.0 0.21142630246337427 0.0 35 0.0 0.0 0.0 0.29754384517406574 0.0 36 0.0 0.0 0.0 0.44812062644066397 0.0 37 0.0 0.0 0.0 0.7013165154882658 0.0 38 0.0 0.0 0.0 1.0076268171059348 0.0 39 0.0 0.0 0.0 1.3051706622800006 0.0 40 0.0 0.0 0.0 1.6563445939325807 0.0 41 0.0 0.0 0.0 2.03588059054976 0.0 42 0.0 0.0 0.0 2.4277927609696732 0.0 43 0.0 0.0 0.0 2.9084008436425144 0.0 44 0.0 0.0 0.0 3.4828615776527556 0.0 45 0.0 0.0 0.0 4.154269006451081 0.0 46 0.0 0.0 0.0 4.872087087009659 0.0 47 0.0 0.0 0.0 5.6497233409481185 0.0 48 0.0 0.0 0.0 6.433032007879497 0.0 49 0.0 0.0 0.0 7.141567958086025 0.0 50 0.0 0.0 0.0 7.735108626708814 0.0 51 0.0 0.0 0.0 8.340509795225891 0.0 52 0.0 0.0 0.0 8.95106770282744 0.0 53 0.0 0.0 0.0 9.586893631942905 0.0 54 0.0 0.0 0.0 10.246440560846942 0.0 55 0.0 0.0 0.0 11.006543901898196 0.0 56 0.0 0.0 0.0 11.769225612491685 0.0 57 0.0 0.0 0.0 12.50251391030368 0.0 58 0.0 0.0 0.0 13.292010664136427 0.0 59 0.0 0.0 0.0 13.960839723392516 0.0 60 0.0 0.0 0.0 14.669891347507491 0.0 61 0.0 0.0 0.0 15.274261168207673 0.0 62 0.0 0.0 0.0 15.905961706055558 0.0 63 0.0 0.0 0.0 16.514972591931766 0.0 64 0.0 0.0 0.0 17.11366999963903 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGACGAC 15 0.0022221084 70.0 22 AACCGGC 20 0.0069433674 52.5 23 GGTACTC 20 0.0069433674 52.5 45 CTGTAGA 20 0.0069433674 52.5 1 TATATCG 20 0.0069433674 52.5 22 TAACCGG 20 0.0069433674 52.5 22 CGGCTTT 20 0.0069433674 52.5 26 TAGGCGG 20 0.0069433674 52.5 34 TAAGATC 20 0.0069433674 52.5 32 GACACGG 30 5.867253E-4 46.666664 7 ACACTTG 30 5.867253E-4 46.666664 49 ACCTTTG 35 0.0012531893 40.0 42 TTGGCGG 40 0.0024144931 35.0 39 GCGACTG 40 0.0024144931 35.0 38 CAGTTGG 40 0.0024144931 35.0 1 TAATCGA 40 0.0024144931 35.0 32 GAACTAT 55 2.9843504E-4 31.818184 6 ACCGGCT 45 0.0042997175 31.111113 24 TAGACTG 90 1.745957E-7 31.111113 5 CCCTAAG 45 0.0042997175 31.111113 1 >>END_MODULE