##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781177_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 174380 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.3255763275605 34.0 34.0 34.0 33.0 34.0 2 33.318786558091524 34.0 34.0 34.0 33.0 34.0 3 33.38540543640326 34.0 34.0 34.0 34.0 34.0 4 33.4656325266659 34.0 34.0 34.0 34.0 34.0 5 33.461262759490765 34.0 34.0 34.0 34.0 34.0 6 36.878913866269066 38.0 37.0 38.0 35.0 38.0 7 36.77459571051726 38.0 37.0 38.0 34.0 38.0 8 36.58261268494093 38.0 37.0 38.0 34.0 38.0 9 36.550550521848834 38.0 37.0 38.0 34.0 38.0 10-11 36.49197155637114 38.0 37.0 38.0 34.0 38.0 12-13 36.4216165844707 38.0 37.0 38.0 34.0 38.0 14-15 36.42397924073862 38.0 37.0 38.0 34.0 38.0 16-17 36.37087682073633 38.0 37.0 38.0 34.0 38.0 18-19 36.3623896089001 38.0 37.0 38.0 34.0 38.0 20-21 36.31061474939787 38.0 37.0 38.0 34.0 38.0 22-23 36.38219979355431 38.0 37.0 38.0 34.0 38.0 24-25 36.35761841954353 38.0 37.0 38.0 34.0 38.0 26-27 36.16027354054364 38.0 37.0 38.0 33.5 38.0 28-29 36.138180984057804 38.0 37.0 38.0 33.5 38.0 30-31 36.15606720954238 38.0 37.0 38.0 34.0 38.0 32-33 36.1076356233513 38.0 37.0 38.0 33.0 38.0 34-35 36.12523511870627 38.0 37.0 38.0 33.5 38.0 36-37 36.06299460947356 38.0 37.0 38.0 32.5 38.0 38-39 35.89385537332263 38.0 37.0 38.0 32.0 38.0 40-41 36.00765856176167 38.0 37.0 38.0 32.0 38.0 42-43 36.05712811102191 38.0 37.0 38.0 32.5 38.0 44-45 36.01398669572198 38.0 37.0 38.0 32.0 38.0 46-47 36.053521045991516 38.0 37.0 38.0 32.0 38.0 48-49 36.01936575295332 38.0 37.0 38.0 32.0 38.0 50-51 35.91828764766602 38.0 37.0 38.0 32.0 38.0 52-53 35.94873552012845 38.0 37.0 38.0 32.0 38.0 54-55 35.96720667507742 38.0 37.0 38.0 32.0 38.0 56-57 35.927216423901825 38.0 37.0 38.0 32.0 38.0 58-59 35.88644626677372 38.0 37.0 38.0 32.0 38.0 60-61 35.89129487326528 38.0 37.0 38.0 31.5 38.0 62-63 35.88562908590435 38.0 37.0 38.0 31.5 38.0 64-65 35.82480789081317 38.0 36.0 38.0 31.0 38.0 66-67 35.77401651565547 38.0 36.0 38.0 31.0 38.0 68-69 35.680046450281 38.0 36.0 38.0 31.0 38.0 70-71 35.470274687464155 38.0 36.0 38.0 30.5 38.0 72-73 35.321057460717974 38.0 36.0 38.0 28.5 38.0 74-75 35.32668023855947 38.0 36.0 38.0 29.0 38.0 76 34.45451313223994 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 3.0 21 5.0 22 24.0 23 49.0 24 130.0 25 251.0 26 467.0 27 779.0 28 1374.0 29 2243.0 30 3379.0 31 4932.0 32 7201.0 33 10164.0 34 13997.0 35 19764.0 36 29765.0 37 79852.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.64055510953091 17.140153687349464 8.94598004358298 28.273311159536647 2 23.77738272737699 18.86684252781282 31.747906870053903 25.60786787475628 3 20.319990824635852 21.052299575639406 29.341667622433764 29.28604197729097 4 14.239591696295447 17.49569904805597 35.11182475054479 33.1528845051038 5 14.4460373896089 32.910310815460484 36.63493519899071 16.0087165959399 6 31.530565431815578 38.019268264709254 16.311503612799633 14.138662690675535 7 29.694919142103455 28.30657185457048 20.320564284895056 21.677944718431014 8 26.041977290973733 35.483426998509 17.7268035325152 20.747792178002065 9 24.563596742745727 14.368620254616355 19.393279045762128 41.67450395687579 10-11 25.43869709829109 24.66509920862484 27.173987842642504 22.722215850441565 12-13 25.23483197614405 21.733283633444202 26.27279504530336 26.759089345108382 14-15 23.698531941736437 22.548744122032343 22.348606491570134 31.404117444661082 16-17 25.562851244408762 26.56497304736782 23.22198646633788 24.65018924188554 18-19 24.975627938983827 25.311388920747792 24.4176511067783 25.29533203349008 20-21 23.513877738272736 25.241140038995297 24.073288221126276 27.17169400160569 22-23 23.73437320793669 26.126562679206334 24.590262644798717 25.54880146805826 24-25 25.0992086248423 26.24698933363918 24.36661314370914 24.28718889780938 26-27 24.54209198302558 26.593932790457618 24.543238903543983 24.32073632297282 28-29 23.73695377910311 24.902798486064917 25.277554765454752 26.082692969377224 30-31 23.699965592384448 27.417421722674618 24.73878885193256 24.143823833008373 32-33 23.16062621860305 25.504931758229155 26.22405092327102 25.110391099896777 34-35 24.056944603738962 24.379515999541233 27.78529647895401 23.778242917765798 36-37 23.773655235692168 27.188037618993004 24.731333868562906 24.30697327675192 38-39 23.29424245899759 25.49575639408189 26.38605344649616 24.823947700424362 40-41 23.17066177313912 24.124326184195436 27.10861337309324 25.596398669572203 42-43 24.554421378598462 24.22009404748251 26.78804908819819 24.43743548572084 44-45 22.708166074091064 25.840119279733916 27.04295217341438 24.408762472760635 46-47 24.154146117674046 23.993863975226517 26.01502465879115 25.836965248308292 48-49 23.819245326298887 23.74268838169515 26.479240738616816 25.958825553389147 50-51 22.32538135107237 24.054650762702146 27.571969262530104 26.047998623695378 52-53 21.775146232366097 23.88060557403372 29.330771877508887 25.013476316091293 54-55 21.319245326298887 24.178231448560613 28.317754329624954 26.184768895515543 56-57 22.522938410368162 24.073288221126276 26.845968574377792 26.557804794127765 58-59 21.334728753297398 24.00992086248423 28.91616011010437 25.739190274114005 60-61 22.461291432503728 25.26809267117789 26.447987154490193 25.82262874182819 62-63 20.350097488244064 26.955212753756165 26.566119967886227 26.12856979011354 64-65 20.81259318729212 27.29126046564973 25.8518752150476 26.04427113201055 66-67 21.01559811905035 27.272336277096 25.12931528845051 26.582750315403143 68-69 20.83667851817869 27.421149214359446 24.72015139350843 27.022020873953434 70-71 21.061761669916272 26.90876247276064 24.72043812363803 27.309037733685056 72-73 20.897178575524716 25.570306227778417 24.91025346943457 28.6222617272623 74-75 20.713671292579424 25.666360821195088 25.235118706273656 28.384849179951832 76 21.131437091409566 25.5826356233513 25.13763046220897 28.148296823030165 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.5 12 5.0 13 3.0 14 4.0 15 8.0 16 17.0 17 25.0 18 26.5 19 63.5 20 95.5 21 92.0 22 115.5 23 201.5 24 311.5 25 359.0 26 460.0 27 653.0 28 858.5 29 972.0 30 1125.5 31 1439.0 32 2099.5 33 2600.0 34 2786.5 35 3363.5 36 4241.5 37 4729.0 38 5485.0 39 7232.0 40 9063.5 41 10076.5 42 10249.0 43 10348.5 44 10303.5 45 10032.0 46 9905.0 47 9812.0 48 9243.5 49 8418.0 50 8068.0 51 7489.0 52 6286.5 53 5432.5 54 5202.0 55 4988.0 56 4359.5 57 3638.5 58 3332.0 59 3120.0 60 2775.5 61 2573.5 62 2504.0 63 2399.0 64 2247.5 65 2214.5 66 2154.0 67 2080.0 68 2027.0 69 1924.0 70 1869.0 71 1864.0 72 1807.5 73 1660.0 74 1556.5 75 1544.0 76 1393.5 77 1215.0 78 1036.0 79 885.0 80 773.0 81 570.5 82 395.5 83 311.0 84 246.5 85 151.0 86 97.0 87 74.0 88 49.5 89 17.5 90 8.5 91 6.0 92 5.0 93 5.5 94 3.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 174380.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.92315632526666 #Duplication Level Percentage of deduplicated Percentage of total 1 63.38894775138185 28.476316091294873 2 19.17101752683917 17.22445234545246 3 7.128176978949921 9.60660626218603 4 2.9181612775572208 5.2437206101617155 5 1.610988421818553 3.6185342355774743 6 1.0071868976345788 2.714760867071912 7 0.7531562352400526 2.3683908705126733 8 0.5680585164098702 2.0415185227663724 9 0.46976524503108363 1.899300378483771 >10 2.932203173468476 22.948732652827157 >50 0.045955295709562534 1.266200252322514 >100 0.005106143967729171 0.5574033719463242 >500 0.0 0.0 >1k 0.0012765359919322927 2.03406353939672 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT 3547 2.03406353939672 No Hit TCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG 370 0.21218029590549373 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC 263 0.15082004817066177 No Hit CTTATACACATCTCCGAGCCCACGAGACCAATCTTAACCTCGTATGCCGT 220 0.12616125702488817 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0017203807776121115 0.0 2 0.0 0.0 0.0 0.0017203807776121115 0.0 3 0.0 0.0 0.0 0.0017203807776121115 0.0 4 0.0 0.0 0.0 0.0022938410368161487 0.0 5 0.0 0.0 0.0 0.002867301296020186 0.0 6 0.0 0.0 0.0 0.002867301296020186 0.0 7 0.0 0.0 0.0 0.002867301296020186 0.0 8 0.0 0.0 0.0 0.002867301296020186 0.0 9 0.0 0.0 0.0 0.003440761555224223 0.0 10 0.0 0.0 0.0 0.00401422181442826 0.0 11 0.0 0.0 0.0 0.004587682073632297 0.0 12 0.0 0.0 0.0 0.004587682073632297 0.0 13 0.0 0.0 0.0 0.004587682073632297 0.0 14 0.0 0.0 0.0 0.004587682073632297 0.0 15 0.0 0.0 0.0 0.004587682073632297 0.0 16 0.0 0.0 0.0 0.004587682073632297 0.0 17 0.0 0.0 0.0 0.0051611423328363345 0.0 18 0.0 0.0 0.0 0.0051611423328363345 0.0 19 0.0 0.0 0.0 0.006308062851244409 0.0 20 0.0 0.0 0.0 0.006308062851244409 0.0 21 0.0 0.0 0.0 0.006308062851244409 0.0 22 0.0 0.0 0.0 0.007454983369652483 0.0 23 0.0 0.0 0.0 0.007454983369652483 0.0 24 0.0 0.0 0.0 0.00802844362885652 0.0 25 0.0 0.0 0.0 0.008601903888060557 0.0 26 0.0 0.0 0.0 0.008601903888060557 0.0 27 0.0 0.0 0.0 0.021218029590549376 0.0 28 0.0 0.0 0.0 0.03440761555224223 0.0 29 0.0 0.0 0.0 0.053331804105975454 0.0 30 0.0 0.0 0.0 0.0648010092900562 0.0 31 0.0 0.0 0.0 0.08372519784378943 0.0 32 0.0 0.0 0.0 0.11354513132239935 0.0 33 0.0 0.0 0.0 0.1588484917995183 0.0 34 0.0 0.0 0.0 0.2236495010895745 0.0 35 0.0 0.0 0.0 0.3199908246358527 0.0 36 0.0 0.0 0.0 0.478265856176167 0.0 37 0.0 0.0 0.0 0.755247161371717 0.0 38 0.0 0.0 0.0 1.0941621745613028 0.0 39 0.0 0.0 0.0 1.4112856979011354 0.0 40 0.0 0.0 0.0 1.7811675650877394 0.0 41 0.0 0.0 0.0 2.1894712696410137 0.0 42 0.0 0.0 0.0 2.6035095767863288 0.0 43 0.0 0.0 0.0 3.111595366441106 0.0 44 0.0 0.0 0.0 3.7114347975685287 0.0 45 0.0 0.0 0.0 4.417937836907902 0.0 46 0.0 0.0 0.0 5.1634361738731505 0.0 47 0.0 0.0 0.0 5.969721298314027 0.0 48 0.0 0.0 0.0 6.773712581718087 0.0 49 0.0 0.0 0.0 7.506594792980846 0.0 50 0.0 0.0 0.0 8.133386856290858 0.0 51 0.0 0.0 0.0 8.773368505562564 0.0 52 0.0 0.0 0.0 9.393279045762128 0.0 53 0.0 0.0 0.0 10.045303360477119 0.0 54 0.0 0.0 0.0 10.739190274114003 0.0 55 0.0 0.0 0.0 11.524257368964332 0.0 56 0.0 0.0 0.0 12.317352907443514 0.0 57 0.0 0.0 0.0 13.09381809840578 0.0 58 0.0 0.0 0.0 13.920174331918798 0.0 59 0.0 0.0 0.0 14.624956990480559 0.0 60 0.0 0.0 0.0 15.345796536300034 0.0 61 0.0 0.0 0.0 15.978323202202088 0.0 62 0.0 0.0 0.0 16.622892533547425 0.0 63 0.0 0.0 0.0 17.239362312191766 0.0 64 0.0 0.0 0.0 17.87074205757541 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 25 2.8308896E-6 70.00001 39 CGTATAA 15 0.0022217315 70.0 33 TATGCCG 600 0.0 54.25 43 CGTATGC 610 0.0 53.93443 41 TCGTATG 610 0.0 53.93443 40 CGTCTTC 590 0.0 52.79661 48 CTCGTAT 585 0.0 52.649574 39 TCGTATA 20 0.006942198 52.500004 32 CGAAGTA 20 0.006942198 52.500004 12 CCGTCTT 600 0.0 51.916668 47 GCCGTCT 600 0.0 51.916668 46 ATGCCGT 625 0.0 51.52 44 TCTCGTA 525 0.0 51.333332 38 CTGCTTG 625 0.0 50.4 54 TGCCGTC 645 0.0 49.922478 45 ATCTCGT 545 0.0 49.449543 37 AATCTCG 540 0.0 49.25926 36 GTATGCC 665 0.0 48.94737 42 ATCTTAA 670 0.0 48.582092 31 TCTTCTG 635 0.0 48.503937 50 >>END_MODULE