SRR1781176_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781176_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	109712
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	4528	4.127169316027417	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG	465	0.42383695493656115	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC	299	0.27253171941082105	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCATTTACCTCGTATGCCGT	245	0.2233119439988333	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCATTTAACTCGTATGCCGT	163	0.14857080355840746	No Hit
ATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGTCTT	121	0.11028875601575033	RNA PCR Primer, Index 45 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCATGA	15	0.0022195294	70.0	55
TAACTCG	15	0.0022195294	70.0	36
TCGTATG	645	0.0	59.689922	40
CTCGTAT	630	0.0	59.444443	39
TCTCGTA	560	0.0	59.375	38
CGTATGC	650	0.0	59.23077	41
TATGCCG	650	0.0	59.23077	43
GTATGCC	670	0.0	57.46269	42
ATCTCGT	580	0.0	57.327587	37
CTGCTTG	635	0.0	56.771656	54
TCTTCTG	605	0.0	56.694214	50
GCCGTCT	630	0.0	56.666664	46
ATGCCGT	670	0.0	56.41791	44
CTTGAAA	640	0.0	56.328125	57
TATCTCG	595	0.0	55.88235	36
CATTTAT	615	0.0	55.772358	32
TGAAAAA	655	0.0	55.572517	59
TTATCTC	605	0.0	55.53719	35
TTGAAAA	650	0.0	55.46154	58
CGTCTTC	640	0.0	55.234375	48