##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781176_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 109712 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.33563329444363 34.0 34.0 34.0 33.0 34.0 2 33.33319964999271 34.0 34.0 34.0 33.0 34.0 3 33.405005833454865 34.0 34.0 34.0 34.0 34.0 4 33.46570110835643 34.0 34.0 34.0 34.0 34.0 5 33.47724952603179 34.0 34.0 34.0 34.0 34.0 6 36.90941738369549 38.0 37.0 38.0 35.0 38.0 7 36.794352486510135 38.0 37.0 38.0 34.0 38.0 8 36.62727869330611 38.0 37.0 38.0 34.0 38.0 9 36.588550021875456 38.0 37.0 38.0 34.0 38.0 10-11 36.494872940061256 38.0 37.0 38.0 34.0 38.0 12-13 36.43725390112294 38.0 37.0 38.0 34.0 38.0 14-15 36.463235562199216 38.0 37.0 38.0 34.0 38.0 16-17 36.39507073064023 38.0 37.0 38.0 34.0 38.0 18-19 36.37806712119003 38.0 37.0 38.0 34.0 38.0 20-21 36.291763890914396 38.0 37.0 38.0 34.0 38.0 22-23 36.375127606825146 38.0 37.0 38.0 34.0 38.0 24-25 36.361974989062276 38.0 37.0 38.0 34.0 38.0 26-27 36.11215272714015 38.0 37.0 38.0 33.0 38.0 28-29 36.14892172232755 38.0 37.0 38.0 33.0 38.0 30-31 36.173499708327256 38.0 37.0 38.0 33.5 38.0 32-33 36.1084065553449 38.0 37.0 38.0 33.0 38.0 34-35 36.10362585678868 38.0 37.0 38.0 33.5 38.0 36-37 36.043158451217735 38.0 37.0 38.0 32.0 38.0 38-39 35.71996682222546 38.0 36.0 38.0 31.0 38.0 40-41 35.954941118564975 38.0 36.5 38.0 32.0 38.0 42-43 36.04155880851684 38.0 37.0 38.0 32.5 38.0 44-45 36.03660492926936 38.0 37.0 38.0 32.0 38.0 46-47 36.01243255067814 38.0 37.0 38.0 32.0 38.0 48-49 35.9869111856497 38.0 37.0 38.0 32.0 38.0 50-51 35.85517536823684 38.0 36.0 38.0 31.0 38.0 52-53 35.887327730786055 38.0 37.0 38.0 31.5 38.0 54-55 35.891953478197465 38.0 37.0 38.0 31.5 38.0 56-57 35.84346288464343 38.0 36.5 38.0 31.5 38.0 58-59 35.772294735306986 38.0 36.0 38.0 31.0 38.0 60-61 35.7622684847601 38.0 36.0 38.0 31.0 38.0 62-63 35.757378408925184 38.0 36.0 38.0 31.0 38.0 64-65 35.74025630742307 38.0 36.0 38.0 31.0 38.0 66-67 35.65288664868018 38.0 36.0 38.0 31.0 38.0 68-69 35.455556365757616 38.0 36.0 38.0 31.0 38.0 70-71 35.061574850517715 38.0 36.0 38.0 27.0 38.0 72-73 34.75415633659034 38.0 36.0 38.0 25.0 38.0 74-75 34.74238004958437 38.0 36.0 38.0 25.0 38.0 76 33.86955848038501 37.0 34.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 1.0 21 7.0 22 22.0 23 47.0 24 104.0 25 183.0 26 332.0 27 611.0 28 1020.0 29 1578.0 30 2253.0 31 3385.0 32 4764.0 33 6284.0 34 8960.0 35 12725.0 36 18032.0 37 49403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.69884789266443 15.804105293860287 9.209566865976376 30.28747994749891 2 23.894378007875165 19.000656263672163 31.89988333090273 25.20508239754995 3 20.732463176316173 19.641424821350444 30.77512031500656 28.85099168732682 4 15.19706139711244 19.84924165086773 32.43583199649993 32.517864955519904 5 15.033906956394924 30.58917894122794 37.07069418112877 17.30621992124836 6 30.652070876476596 37.24752078168295 16.920665013854457 15.179743327986001 7 29.51454717806621 26.646128044334255 19.22761411696077 24.611710660638764 8 25.86225754703223 35.99606241796704 17.32718389966458 20.814496135336153 9 24.4558480385008 15.669206650138545 17.98435904914686 41.890586262213795 10-11 25.66127679743328 24.85279641242526 26.098330173545282 23.38759661659618 12-13 25.490374799474992 20.23023917164941 25.918769141023773 28.36061688785183 14-15 23.639620096252006 20.830446988478926 21.051935977832873 34.477996937436195 16-17 27.294188420592096 25.865447717660782 21.76015385737203 25.080210004375093 18-19 26.87855476155753 23.676990666472218 22.488879976666183 26.95557459530407 20-21 23.721197316610763 23.419042584220502 22.74546084293423 30.114299256234506 22-23 24.123614554469885 25.894159253317778 22.78693306110544 27.195293131106897 24-25 26.640659180399588 25.777034417383692 22.655224588012253 24.927081814204463 26-27 26.2099861455447 26.358556949103107 23.049438529969375 24.38201837538282 28-29 26.669826454717803 23.624580720431677 23.440918039959165 26.26467478489135 30-31 27.410857517864955 22.812454426133876 25.73465072189004 24.04203733411113 32-33 23.405826163045063 25.92059209566866 23.732590783141315 26.940990958144962 34-35 24.30636575761995 23.228543823829664 28.483210587720574 23.981879830829808 36-37 23.994640513344027 25.114390403966752 26.350353653201108 24.540615429488113 38-39 23.33974405716786 23.792292547761413 26.278802683389234 26.589160711681494 40-41 23.299183316319088 22.578660492926936 26.969702493801957 27.152453696952023 42-43 26.23778620387925 22.632437654951147 26.135700743765494 24.99407539740411 44-45 22.997940061251278 25.346817121190025 27.12647659326236 24.52876622429634 46-47 25.562381507948086 22.611017937873708 24.877406300131252 26.949194254046958 48-49 25.503591220650428 22.27012541927957 24.550641680035 27.675641680035 50-51 22.479765203441737 22.334384570511887 27.55350371882748 27.6323465072189 52-53 21.931967332652764 22.364463322152545 30.410073647367653 25.29349569782704 54-55 21.495369695201983 22.52397185358028 28.188347673909874 27.79231077730786 56-57 24.079863642992564 22.683936123669245 25.27891206066793 27.957288172670264 58-59 21.61158305381362 22.72176243255068 29.865921685868457 25.80073282776725 60-61 23.95635846580137 25.033724660930435 25.063803412571094 25.946113460697095 62-63 20.77028948519761 28.477285985124688 24.58345486364299 26.16896966603471 64-65 21.31945457197025 28.71973895289485 23.792748286422633 26.168058188712262 66-67 21.349989062272133 28.7867325360945 23.244494676972437 26.618783724660933 68-69 21.071532740265422 29.084329881872538 23.53935759078314 26.304779787078896 70-71 21.68404550094794 27.85110106460551 23.522495260317925 26.94235817412863 72-73 22.04772495260318 25.329499052063586 24.11586699722911 28.506908998104123 74-75 22.091931602741724 25.198702056292838 24.41392008166837 28.29544625929707 76 22.59916873268193 24.756635554907394 24.214306548053084 28.42988916435759 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 3.0 15 5.0 16 7.5 17 11.0 18 12.5 19 27.0 20 49.5 21 59.0 22 80.5 23 142.0 24 215.5 25 249.0 26 275.0 27 351.0 28 504.0 29 607.0 30 694.0 31 848.5 32 1146.5 33 1377.0 34 1515.0 35 1862.5 36 2383.0 37 2694.0 38 2922.5 39 3856.0 40 5389.5 41 6562.5 42 6907.0 43 6785.0 44 6467.5 45 6158.0 46 6044.0 47 5823.0 48 5240.5 49 4785.5 50 4692.0 51 4296.0 52 3563.5 53 3031.5 54 2836.0 55 2688.0 56 2358.0 57 2059.5 58 1943.0 59 1798.0 60 1633.5 61 1584.0 62 1554.0 63 1580.0 64 1584.5 65 1638.5 66 1729.0 67 1744.0 68 1771.0 69 1781.0 70 1757.5 71 1751.0 72 1712.5 73 1659.0 74 1538.0 75 1432.0 76 1374.0 77 1195.0 78 948.0 79 822.0 80 755.0 81 585.0 82 397.0 83 312.0 84 254.0 85 147.5 86 83.5 87 68.0 88 51.0 89 25.0 90 12.5 91 4.5 92 0.0 93 2.0 94 2.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 109712.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.6046375966166 #Duplication Level Percentage of deduplicated Percentage of total 1 60.613081105920195 28.854637596616595 2 20.613464042276174 19.625929706868895 3 8.418855786168338 12.023297360361674 4 3.695335835184192 7.036604929269359 5 1.8917055985295244 4.502697972874435 6 1.1890173853105614 3.396164503427155 7 0.7677873937351612 2.558516844100919 8 0.618442214903883 2.3552574011958582 9 0.40782721911618286 1.7473020271255653 >10 1.7691659646166806 12.449868747265567 >50 0.003829363559776365 0.14401341694618638 >100 0.009573408899440913 1.1785401779203735 >500 0.0 0.0 >1k 0.0019146817798881826 4.127169316027417 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT 4528 4.127169316027417 No Hit TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG 465 0.42383695493656115 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC 299 0.27253171941082105 No Hit CTTATACACATCTCCGAGCCCACGAGACGGTCATTTACCTCGTATGCCGT 245 0.2233119439988333 No Hit CTTATACACATCTCCGAGCCCACGAGACGGTCATTTAACTCGTATGCCGT 163 0.14857080355840746 No Hit ATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGTCTT 121 0.11028875601575033 RNA PCR Primer, Index 45 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0027344319673326526 0.0 2 0.0 0.0 0.0 0.0027344319673326526 0.0 3 0.0 0.0 0.0 0.0027344319673326526 0.0 4 0.0 0.0 0.0 0.00364590928977687 0.0 5 0.0 0.0 0.0 0.005468863934665305 0.0 6 0.0 0.0 0.0 0.006380341257109523 0.0 7 0.0 0.0 0.0 0.006380341257109523 0.0 8 0.0 0.0 0.0 0.006380341257109523 0.0 9 0.0 0.0 0.0 0.010026250546886394 0.0 10 0.0 0.0 0.0 0.01093772786933061 0.0 11 0.0 0.0 0.0 0.01093772786933061 0.0 12 0.0 0.0 0.0 0.01093772786933061 0.0 13 0.0 0.0 0.0 0.011849205191774828 0.0 14 0.0 0.0 0.0 0.012760682514219046 0.0 15 0.0 0.0 0.0 0.012760682514219046 0.0 16 0.0 0.0 0.0 0.013672159836663264 0.0 17 0.0 0.0 0.0 0.013672159836663264 0.0 18 0.0 0.0 0.0 0.01458363715910748 0.0 19 0.0 0.0 0.0 0.01458363715910748 0.0 20 0.0 0.0 0.0 0.017318069126440135 0.0 21 0.0 0.0 0.0 0.017318069126440135 0.0 22 0.0 0.0 0.0 0.018229546448884353 0.0 23 0.0 0.0 0.0 0.02005250109377279 0.0 24 0.0 0.0 0.0 0.02005250109377279 0.0 25 0.0 0.0 0.0 0.020963978416217003 0.0 26 0.0 0.0 0.0 0.02187545573866122 0.0 27 0.0 0.0 0.0 0.03737057022021292 0.0 28 0.0 0.0 0.0 0.05377716202420884 0.0 29 0.0 0.0 0.0 0.07474114044042585 0.0 30 0.0 0.0 0.0 0.10664284672597346 0.0 31 0.0 0.0 0.0 0.1348986437217442 0.0 32 0.0 0.0 0.0 0.17409216858684556 0.0 33 0.0 0.0 0.0 0.23607262651305236 0.0 34 0.0 0.0 0.0 0.3208400175003646 0.0 35 0.0 0.0 0.0 0.4211025229692285 0.0 36 0.0 0.0 0.0 0.603397987458072 0.0 37 0.0 0.0 0.0 0.8859559574157795 0.0 38 0.0 0.0 0.0 1.2159107481405862 0.0 39 0.0 0.0 0.0 1.562272130669389 0.0 40 0.0 0.0 0.0 1.9450926060959604 0.0 41 0.0 0.0 0.0 2.3853361528365173 0.0 42 0.0 0.0 0.0 2.852924019250401 0.0 43 0.0 0.0 0.0 3.37793495697827 0.0 44 0.0 0.0 0.0 4.01323465072189 0.0 45 0.0 0.0 0.0 4.64853434446551 0.0 46 0.0 0.0 0.0 5.313001312527344 0.0 47 0.0 0.0 0.0 6.106898060376258 0.0 48 0.0 0.0 0.0 6.822407758494968 0.0 49 0.0 0.0 0.0 7.472291089397696 0.0 50 0.0 0.0 0.0 8.054725098439551 0.0 51 0.0 0.0 0.0 8.677264109668952 0.0 52 0.0 0.0 0.0 9.257875164065918 0.0 53 0.0 0.0 0.0 9.846689514364883 0.0 54 0.0 0.0 0.0 10.389018521219192 0.0 55 0.0 0.0 0.0 11.099059355403238 0.0 56 0.0 0.0 0.0 11.789047688493511 0.0 57 0.0 0.0 0.0 12.439842496718681 0.0 58 0.0 0.0 0.0 13.087902872976521 0.0 59 0.0 0.0 0.0 13.684920519177483 0.0 60 0.0 0.0 0.0 14.365794079043313 0.0 61 0.0 0.0 0.0 14.966457634534052 0.0 62 0.0 0.0 0.0 15.51243255067814 0.0 63 0.0 0.0 0.0 16.10671576491177 0.0 64 0.0 0.0 0.0 16.690061251276067 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCATGA 15 0.0022195294 70.0 55 TAACTCG 15 0.0022195294 70.0 36 TCGTATG 645 0.0 59.689922 40 CTCGTAT 630 0.0 59.444443 39 TCTCGTA 560 0.0 59.375 38 CGTATGC 650 0.0 59.23077 41 TATGCCG 650 0.0 59.23077 43 GTATGCC 670 0.0 57.46269 42 ATCTCGT 580 0.0 57.327587 37 CTGCTTG 635 0.0 56.771656 54 TCTTCTG 605 0.0 56.694214 50 GCCGTCT 630 0.0 56.666664 46 ATGCCGT 670 0.0 56.41791 44 CTTGAAA 640 0.0 56.328125 57 TATCTCG 595 0.0 55.88235 36 CATTTAT 615 0.0 55.772358 32 TGAAAAA 655 0.0 55.572517 59 TTATCTC 605 0.0 55.53719 35 TTGAAAA 650 0.0 55.46154 58 CGTCTTC 640 0.0 55.234375 48 >>END_MODULE