##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781174_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 506577 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.177558396847864 34.0 32.0 34.0 21.0 34.0 2 31.365484417966073 34.0 33.0 34.0 23.0 34.0 3 31.445993402779834 34.0 33.0 34.0 23.0 34.0 4 31.539667217422032 34.0 33.0 34.0 23.0 34.0 5 31.608965665634248 34.0 33.0 34.0 23.0 34.0 6 34.49350246852897 37.0 34.0 38.0 26.0 38.0 7 34.44492150255539 37.0 34.0 38.0 25.0 38.0 8 34.22727640615346 37.0 34.0 38.0 24.0 38.0 9 34.49978186929134 37.0 34.0 38.0 26.0 38.0 10-11 34.36989736999509 37.0 34.0 38.0 25.0 38.0 12-13 34.34085834927366 37.0 34.0 38.0 25.0 38.0 14-15 34.22111248635449 37.0 34.0 38.0 24.0 38.0 16-17 34.188777816600435 37.0 34.0 38.0 24.0 38.0 18-19 34.25290824494598 37.0 34.0 38.0 24.0 38.0 20-21 34.174037707989115 37.0 34.0 38.0 24.0 38.0 22-23 34.24936880276839 37.0 34.0 38.0 24.5 38.0 24-25 34.251194783813716 37.0 34.0 38.0 24.5 38.0 26-27 34.159848354741726 37.0 34.0 38.0 24.0 38.0 28-29 34.26026842908384 37.0 34.0 38.0 24.0 38.0 30-31 34.34273269414126 37.0 34.0 38.0 25.0 38.0 32-33 34.286862609238085 37.0 34.0 38.0 24.5 38.0 34-35 34.32310487842915 37.0 34.0 38.0 24.5 38.0 36-37 34.16366909670198 37.0 34.0 38.0 24.0 38.0 38-39 34.182898157634476 37.0 34.0 38.0 24.0 38.0 40-41 34.17860364761921 37.0 34.0 38.0 24.0 38.0 42-43 34.238231305408654 37.0 34.0 38.0 24.0 38.0 44-45 34.26092479524337 37.0 34.0 38.0 24.0 38.0 46-47 34.253214220148166 37.0 34.0 38.0 24.0 38.0 48-49 34.2310714856774 37.0 34.0 38.0 24.0 38.0 50-51 34.0891651219854 37.0 34.0 38.0 24.0 38.0 52-53 34.16320421179801 37.0 34.0 38.0 24.0 38.0 54-55 34.124384841791084 37.0 34.0 38.0 24.0 38.0 56-57 34.101698261073835 37.0 34.0 38.0 24.0 38.0 58-59 34.10232600374671 37.0 34.0 38.0 24.0 38.0 60-61 34.0805593226696 37.0 34.0 38.0 24.0 38.0 62-63 34.05465111917833 37.0 34.0 38.0 24.0 38.0 64-65 34.087689531897425 37.0 34.0 38.0 24.0 38.0 66-67 33.994196341326194 37.0 34.0 38.0 24.0 38.0 68-69 33.781574173324096 37.0 34.0 38.0 23.5 38.0 70-71 33.94318731407071 37.0 34.0 38.0 24.0 38.0 72-73 33.92566085708589 37.0 34.0 38.0 24.0 38.0 74-75 33.93172607520673 37.0 34.0 38.0 24.0 38.0 76 32.68924763658832 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 23.0 14 114.0 15 285.0 16 645.0 17 1252.0 18 2081.0 19 2625.0 20 3306.0 21 3991.0 22 4626.0 23 5513.0 24 6500.0 25 7644.0 26 8949.0 27 10754.0 28 12472.0 29 14769.0 30 17422.0 31 20481.0 32 25048.0 33 29553.0 34 37880.0 35 49887.0 36 75281.0 37 165472.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.680654668490675 17.518560850571582 9.05745819490423 24.743326286033515 2 24.15684091460923 20.875404923634512 30.685562115927095 24.282192045829163 3 19.71388357544855 22.049757489976844 30.43466245013098 27.801696484443628 4 13.845476600793166 16.794090533127246 37.165722091607 32.19471077447259 5 13.652416118378843 33.09585709576234 36.427433539225035 16.82429324663378 6 28.92610600165424 37.57572886254212 19.35145101337013 14.14671412243351 7 28.79878083687179 30.513623792631723 21.970598744119847 18.71699662637664 8 25.956962120269967 34.8450482355101 20.104347414114734 19.093642230105196 9 24.9430984825604 17.355703081663794 21.73233289312385 35.968865542651955 10-11 24.875093026331633 24.89355024014118 28.1563316139501 22.07502511957708 12-13 25.283027062026108 23.2633933242133 27.498583630918894 23.9549959828417 14-15 23.146135730599692 24.173422796534386 24.920495798269563 27.75994567459636 16-17 23.17209427194681 27.929021649226083 25.455261490355856 23.44362258847125 18-19 22.434003122921094 27.473414702996777 27.22666050768195 22.865921666400173 20-21 22.670788448745206 27.455648400934113 27.03725198735829 22.836311162962392 22-23 22.775807034271196 26.9508880189981 27.37293639466458 22.900368552066123 24-25 22.715993817326883 27.027677924580075 27.090945700258796 23.16538255783425 26-27 22.128324025765085 27.21195395764119 27.522765542059744 23.136956474533978 28-29 22.270750547300803 27.22281114223504 27.995151773570452 22.511286536893703 30-31 22.70336000252676 27.195075970681653 27.498682332597017 22.602881694194565 32-33 22.16869301211859 27.560469583103853 27.52799673100042 22.742840673777135 34-35 22.813214970280924 26.75654441476814 27.728065032561684 22.702175582389252 36-37 22.819531877680983 26.890285188628777 27.160826488371953 23.129356445318283 38-39 22.179945003424947 27.42919635119636 27.748891086646253 22.641967558732436 40-41 22.37468341436741 26.795235472593504 28.014102495770633 22.81597861726845 42-43 22.334117024657655 26.653993371195295 27.860226579572306 23.151663024574745 44-45 21.879200990175235 26.717458550230273 27.945110022760606 23.458230436833887 46-47 22.105227833083617 26.44188346490267 28.18100703348158 23.271881668532128 48-49 21.541739952662674 26.39312483590846 28.822765344656393 23.242369866772474 50-51 21.793330530205672 26.401711881905417 28.457569135590443 23.347388452298464 52-53 21.446591534949278 26.20756568103171 28.899950056950868 23.445892727068145 54-55 20.902153078406638 26.58667882671341 28.92126961942607 23.58989847545388 56-57 20.83181990461451 26.718300906478 28.685429234705158 23.76444995420233 58-59 20.953420612109536 26.315893370392594 28.814432582672687 23.91625343482518 60-61 20.79243785730078 26.41429913774044 28.50875288209469 24.28451012286409 62-63 20.51775054483434 26.282334733583905 28.946594390575154 24.2533203310066 64-65 21.040475664066204 26.273155459397994 28.52582830611794 24.160540570417865 66-67 21.015504090205617 26.25272417169388 28.118189570765296 24.613582167335206 68-69 20.779804017561037 26.195674489119103 27.94802754177063 25.07649395154922 70-71 21.464795015950223 26.22064606297969 27.667615520672122 24.646943400397966 72-73 21.221988408452038 25.98632781655665 27.78388632702694 25.007797447964375 74-75 21.38494520072013 26.348958497836456 27.447609045829253 24.818487255614162 76 21.557433519484697 26.378418285867696 27.151449828949993 24.912698365697615 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0 7 1.0 8 0.0 9 0.5 10 1.5 11 2.0 12 2.0 13 4.0 14 11.0 15 37.5 16 83.0 17 107.0 18 177.0 19 339.5 20 567.0 21 702.0 22 899.0 23 1390.0 24 2027.5 25 2371.0 26 2842.0 27 3805.5 28 4803.5 29 5309.0 30 6153.5 31 7676.0 32 9651.5 33 10949.0 34 12043.5 35 14416.5 36 17144.0 37 18593.0 38 19841.5 39 22839.0 40 26130.0 41 28381.0 42 29090.0 43 29703.0 44 30221.0 45 30161.5 46 30197.0 47 29754.0 48 27652.5 49 24900.5 50 23807.0 51 22398.0 52 19195.5 53 16245.5 54 15089.0 55 14028.0 56 12170.0 57 10515.5 58 9658.0 59 8790.5 60 7172.5 61 5892.5 62 5363.0 63 4951.5 64 4185.5 65 3591.5 66 3112.0 67 2872.0 68 2692.0 69 2424.5 70 2304.0 71 2271.0 72 2194.0 73 1989.0 74 1783.5 75 1706.0 76 1558.0 77 1333.5 78 1125.5 79 994.0 80 897.5 81 714.0 82 537.5 83 448.0 84 391.5 85 281.5 86 176.5 87 125.0 88 96.5 89 60.0 90 43.0 91 24.0 92 14.0 93 13.5 94 10.0 95 5.0 96 3.0 97 2.0 98 1.0 99 5.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 1.97403356251863E-4 58-59 1.97403356251863E-4 60-61 1.97403356251863E-4 62-63 1.97403356251863E-4 64-65 1.97403356251863E-4 66-67 1.97403356251863E-4 68-69 1.97403356251863E-4 70-71 1.97403356251863E-4 72-73 1.97403356251863E-4 74-75 1.97403356251863E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 506577.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.51147275107478 #Duplication Level Percentage of deduplicated Percentage of total 1 73.21347767282651 40.641879708465304 2 15.32413508685175 17.0133061461512 3 5.562113384574522 9.262833167585907 4 1.9778524954365024 4.391740196242746 5 0.8292055263142842 2.3015209989518004 6 0.47217397910799846 1.5726643785012127 7 0.33812676524866275 1.313894030085714 8 0.2704850910681274 1.2012020609920266 9 0.22123620270684743 1.1053032694301177 >10 1.7035849081298504 17.872931497639033 >50 0.0822450783627583 2.9668105103934463 >100 0.00536380937214557 0.3559140355614975 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.94806712503726E-4 0.0 2 0.0 0.0 0.0 3.94806712503726E-4 0.0 3 0.0 0.0 0.0 5.92210068755589E-4 0.0 4 0.0 0.0 0.0 0.0017766302062667669 0.0 5 0.0 0.0 0.0 0.00197403356251863 0.0 6 0.0 0.0 0.0 0.00197403356251863 0.0 7 0.0 0.0 0.0 0.00197403356251863 0.0 8 0.0 0.0 0.0 0.00197403356251863 0.0 9 0.0 0.0 0.0 0.002171436918770493 0.0 10 0.0 0.0 0.0 0.002171436918770493 0.0 11 0.0 0.0 0.0 0.002171436918770493 0.0 12 0.0 0.0 0.0 0.002171436918770493 0.0 13 0.0 0.0 0.0 0.002566243631274219 0.0 14 0.0 0.0 0.0 0.002763646987526082 0.0 15 0.0 0.0 1.97403356251863E-4 0.002763646987526082 0.0 16 0.0 0.0 1.97403356251863E-4 0.002763646987526082 0.0 17 0.0 0.0 1.97403356251863E-4 0.003158453700029808 0.0 18 0.0 0.0 1.97403356251863E-4 0.003355857056281671 0.0 19 0.0 0.0 1.97403356251863E-4 0.003750663768785397 0.0 20 0.0 0.0 1.97403356251863E-4 0.003750663768785397 0.0 21 0.0 0.0 1.97403356251863E-4 0.004342873837540986 0.0 22 0.0 0.0 1.97403356251863E-4 0.005724697331304027 0.0 23 0.0 0.0 1.97403356251863E-4 0.005922100687555889 0.0 24 0.0 0.0 1.97403356251863E-4 0.006909117468815205 0.0 25 0.0 0.0 1.97403356251863E-4 0.007501327537570794 0.0 26 0.0 0.0 1.97403356251863E-4 0.008093537606326383 0.0 27 0.0 0.0 1.97403356251863E-4 0.011449394662608053 0.0 28 0.0 0.0 1.97403356251863E-4 0.01855591548767512 0.0 29 0.0 0.0 1.97403356251863E-4 0.02901829336902386 0.0 30 0.0 0.0 1.97403356251863E-4 0.03987547796287633 0.0 31 0.0 0.0 1.97403356251863E-4 0.052509292762995555 0.0 32 0.0 0.0 1.97403356251863E-4 0.0683015612631446 0.0 33 0.0 0.0 1.97403356251863E-4 0.09179256065711629 0.0 34 0.0 0.0 1.97403356251863E-4 0.12258748423240692 0.0 35 0.0 0.0 1.97403356251863E-4 0.17055649980160964 0.0 36 0.0 0.0 1.97403356251863E-4 0.2501100523711104 0.0 37 0.0 0.0 1.97403356251863E-4 0.3744741668097841 0.0 38 0.0 0.0 1.97403356251863E-4 0.5472021035301642 0.0 39 0.0 0.0 1.97403356251863E-4 0.7724393330135398 0.0 40 0.0 0.0 1.97403356251863E-4 1.0320247464847396 0.0 41 0.0 0.0 1.97403356251863E-4 1.3162855794874224 0.0 42 0.0 0.0 1.97403356251863E-4 1.6623336629969383 0.0 43 0.0 0.0 1.97403356251863E-4 2.0482572244693302 0.0 44 0.0 0.0 1.97403356251863E-4 2.523407102967565 0.0 45 0.0 0.0 1.97403356251863E-4 3.0783079373915516 0.0 46 0.0 0.0 1.97403356251863E-4 3.6946012156098678 0.0 47 0.0 0.0 1.97403356251863E-4 4.321949081778288 0.0 48 0.0 0.0 1.97403356251863E-4 4.95679827548428 0.0 49 0.0 0.0 1.97403356251863E-4 5.559075915408714 0.0 50 0.0 0.0 1.97403356251863E-4 6.105883212226375 0.0 51 0.0 0.0 1.97403356251863E-4 6.643017744587693 0.0 52 0.0 0.0 1.97403356251863E-4 7.171466529273931 0.0 53 0.0 0.0 1.97403356251863E-4 7.698138683753901 0.0 54 0.0 0.0 1.97403356251863E-4 8.282650021615668 0.0 55 0.0 0.0 1.97403356251863E-4 8.903286173671525 0.0 56 0.0 0.0 1.97403356251863E-4 9.520961275383604 0.0 57 0.0 0.0 1.97403356251863E-4 10.119883058251757 0.0 58 0.0 0.0 1.97403356251863E-4 10.724332135094961 0.0 59 0.0 0.0 1.97403356251863E-4 11.302526565556668 0.0 60 0.0 0.0 1.97403356251863E-4 11.86334950066821 0.0 61 0.0 0.0 1.97403356251863E-4 12.371663143016757 0.0 62 0.0 0.0 1.97403356251863E-4 12.89951971763424 0.0 63 0.0 0.0 1.97403356251863E-4 13.440799720476848 0.0 64 0.0 0.0 1.97403356251863E-4 13.955627673581706 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGATT 20 0.006949804 52.5 19 GCTCGAT 20 0.006949804 52.5 24 CACGCTA 40 4.5911496E-5 43.75 23 ACCCGAC 40 0.0024181602 35.0 36 CCGACCA 55 2.991109E-4 31.818184 38 GGACGAT 50 0.007206623 27.999998 18 TTCGGTC 50 0.007206623 27.999998 28 TACCACG 65 7.95316E-4 26.923077 20 CGTGCGA 65 7.95316E-4 26.923077 10 GCTCTAC 65 7.95316E-4 26.923077 1 CGAGGAT 65 7.95316E-4 26.923077 24 ACGCTAC 65 7.95316E-4 26.923077 24 CTACTAG 175 7.2759576E-12 26.000002 1 CGAGTGC 70 0.0012256078 25.0 45 ACTTCGG 70 0.0012256078 25.0 34 CGCTACT 70 0.0012256078 25.0 25 ACGTCCG 70 0.0012256078 25.0 43 CCACGCT 70 0.0012256078 25.0 22 CGCAAAA 85 1.3076082E-4 24.705883 22 CATCGCC 130 1.6039303E-7 24.230768 11 >>END_MODULE