##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781173_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17339 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.341138473960434 31.0 12.0 34.0 12.0 34.0 2 25.971624661168462 32.0 12.0 34.0 12.0 34.0 3 25.721667916258145 32.0 11.0 34.0 11.0 34.0 4 25.94884364726916 32.0 11.0 34.0 11.0 34.0 5 25.828709844858412 32.0 11.0 34.0 11.0 34.0 6 27.240902012803506 33.0 11.0 38.0 11.0 38.0 7 27.391026010727263 32.0 12.0 38.0 12.0 38.0 8 26.957725359017246 32.0 11.0 37.0 11.0 38.0 9 27.815617971047928 34.0 12.0 38.0 11.0 38.0 10-11 27.221350712267142 33.5 11.0 38.0 11.0 38.0 12-13 27.235567218409365 32.5 11.0 38.0 11.0 38.0 14-15 27.12682392294827 31.0 11.0 37.5 11.0 38.0 16-17 26.95351519695484 31.0 11.0 37.0 11.0 38.0 18-19 27.09040313743584 31.0 11.0 37.0 11.0 38.0 20-21 26.93480016148567 31.0 11.0 37.0 11.0 38.0 22-23 26.970355845204452 31.0 11.0 37.0 11.0 38.0 24-25 26.982697964127112 31.0 11.0 37.0 11.0 38.0 26-27 26.891804602341544 31.0 11.0 37.0 11.0 38.0 28-29 26.895120825883843 31.0 11.0 37.0 11.0 38.0 30-31 26.944056750677664 31.0 11.0 37.0 11.0 38.0 32-33 26.834361843243556 31.0 11.0 37.0 11.0 38.0 34-35 26.916113962742948 31.0 11.0 37.0 11.0 38.0 36-37 26.850654593690525 31.0 11.0 37.0 11.0 38.0 38-39 26.795518772708924 31.0 11.0 37.0 11.0 38.0 40-41 26.835140434857834 31.0 11.0 37.0 11.0 38.0 42-43 26.876722994405675 31.0 11.0 37.0 11.0 38.0 44-45 26.992242920583656 31.0 11.0 37.0 11.0 38.0 46-47 26.863256243151277 31.0 11.0 37.0 11.0 38.0 48-49 26.751312071053697 31.0 11.0 37.0 11.0 38.0 50-51 26.690870292404405 31.0 11.0 37.0 11.0 38.0 52-53 26.698656208547206 31.0 11.0 37.0 11.0 38.0 54-55 26.73259703558452 31.0 11.0 37.0 11.0 38.0 56-57 26.678730030566932 31.0 11.0 37.0 11.0 38.0 58-59 26.69897341253821 31.0 11.0 37.0 11.0 38.0 60-61 26.666906972720458 31.0 11.0 37.0 11.0 38.0 62-63 26.54931080223773 31.0 11.0 37.0 11.0 38.0 64-65 26.604879174116157 31.0 11.0 37.0 11.0 38.0 66-67 26.48982063556145 31.0 11.0 37.0 11.0 38.0 68-69 26.158861526039566 29.0 11.0 37.0 11.0 38.0 70-71 26.32683545763885 31.0 11.0 37.0 11.0 38.0 72-73 26.184209008593342 30.0 11.0 37.0 11.0 38.0 74-75 26.129736432320204 29.5 11.0 37.0 11.0 38.0 76 25.032124113270662 27.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 41.0 14 111.0 15 340.0 16 742.0 17 1373.0 18 1604.0 19 1523.0 20 1097.0 21 740.0 22 434.0 23 387.0 24 301.0 25 272.0 26 266.0 27 254.0 28 271.0 29 329.0 30 351.0 31 403.0 32 466.0 33 565.0 34 751.0 35 865.0 36 1355.0 37 2497.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.45187150354692 19.805063729165465 12.936155487629044 31.806909279658573 2 19.4763250475806 17.515427648653326 34.811696176250074 28.196551127516006 3 20.10496568429552 17.492358267489475 29.119326374070013 33.28334967414499 4 17.01366860833958 15.294999711632734 29.367322221581404 38.32400945844628 5 16.137032124113272 25.820404867639425 32.26252955764461 25.780033450602684 6 30.809158544322045 26.299094526789318 18.461272276371187 24.430474652517447 7 26.73164542361151 22.07739777380472 22.78678124459311 28.40417555799066 8 22.42343849126247 27.815906338312473 23.42695657188996 26.333698598535094 9 20.329892150643058 14.729799873118404 23.305842320779746 41.63446565545879 10-11 24.274756329661457 20.531749235826748 27.32856566122614 27.86492877328566 12-13 22.97710363919488 18.85345175615664 26.538439356364265 31.631005248284218 14-15 22.28502220427937 20.329892150643058 23.749927908183864 33.6351577368937 16-17 22.77236288136571 21.644846876982523 24.0527135359594 31.530076705692373 18-19 21.94474883211258 20.970067477939907 26.016494607532152 31.068689082415364 20-21 23.057846473268352 21.647730549628005 25.258088701770575 30.036334275333065 22-23 23.571140204164024 20.612492069900227 24.701539881192687 31.114827844743065 24-25 22.518599688563352 21.105600092277523 24.66405213680143 31.711748082357687 26-27 22.397485437453142 21.549685679681645 25.58682738335544 30.466001499509776 28-29 22.25618547782456 21.347828594497955 25.728127342984024 30.667858584693462 30-31 22.455158890362767 21.12001845550493 25.269623392352504 31.155199261779803 32-33 22.319626276025144 21.610242805236748 25.185996885633543 30.88413403310456 34-35 22.420554818616992 20.76244304746525 25.98477420843186 30.8322279254859 36-37 23.153007670569238 19.68394947805525 25.837706903512313 31.3253359478632 38-39 22.50706499798143 19.18507411038699 27.354518715035468 30.95334217659611 40-41 22.132187554068864 19.07261087721322 28.46184901090028 30.33335255781764 42-43 20.551934944345117 18.87363746467501 28.6435203875656 31.930907203414264 44-45 19.894457581175384 19.216794509487283 30.042101620624027 30.846646288713302 46-47 21.267085760424475 20.254916661860545 28.4589653382548 30.019032239460174 48-49 20.433704365880384 20.94123075148509 28.202318472806965 30.422746409827557 50-51 20.549051271699636 21.25555106984255 27.207451410115922 30.987946248341885 52-53 19.36674548705231 21.99377126708576 27.925485898840762 30.713997347021166 54-55 19.76180863948325 20.748024684237844 27.46698194820924 32.02318472806967 56-57 20.012688159640117 21.950516177403543 27.363169732971915 30.67362592998443 58-59 20.64997981429148 20.58365534344541 27.02289636080512 31.743468481457988 60-61 20.113616702231962 20.28952073360632 27.39489013207221 32.20197243208951 62-63 20.551934944345117 20.410634984716538 27.19880039217948 31.838629678758867 64-65 20.89509198915739 19.810831074456427 26.474998558163676 32.81907837822251 66-67 20.667281850164372 21.665032585500892 25.278274410288944 32.389411154045796 68-69 21.382432666243727 22.919430186285254 24.50256646865448 31.19557067881654 70-71 20.675932868100812 22.720456773747046 25.670453890074395 30.933156468077744 72-73 20.439471711171347 24.764980679393275 25.232135647961247 29.563411961474134 74-75 20.540400253763195 23.60286060326432 25.552223311609666 30.30451583136282 76 20.618259415191186 21.898610069784876 26.61629851779226 30.866831997231674 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 2.0 16 2.0 17 3.0 18 8.5 19 14.0 20 11.5 21 9.0 22 20.5 23 35.5 24 48.5 25 58.0 26 73.5 27 105.5 28 140.0 29 158.0 30 159.0 31 184.0 32 241.0 33 274.0 34 319.0 35 373.5 36 424.5 37 466.0 38 501.0 39 556.0 40 623.5 41 655.0 42 639.0 43 648.5 44 658.5 45 666.0 46 673.0 47 645.0 48 639.0 49 598.5 50 536.0 51 541.0 52 501.0 53 455.5 54 455.0 55 441.0 56 436.5 57 434.0 58 422.0 59 412.0 60 405.5 61 386.5 62 364.0 63 366.5 64 351.0 65 355.0 66 396.5 67 416.0 68 391.5 69 378.5 70 405.0 71 420.0 72 391.0 73 361.0 74 331.5 75 303.0 76 290.5 77 253.0 78 193.5 79 159.0 80 153.5 81 124.5 82 87.0 83 73.0 84 63.5 85 40.5 86 16.5 87 6.0 88 10.0 89 8.5 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 17339.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.98437049426148 #Duplication Level Percentage of deduplicated Percentage of total 1 91.13357962278825 81.09464213622469 2 6.332231512087628 11.269392698540862 3 1.8212457061377925 4.861872080281446 4 0.5185041156264177 1.8455504931080224 5 0.14906993324259513 0.6632447084606956 6 0.02592520578132089 0.13841628698310168 7 0.012962602890660445 0.08074283407347597 8 0.006481301445330222 0.04613876232770056 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.00576734529096257 0.0 5 0.0 0.0 0.0 0.00576734529096257 0.0 6 0.0 0.0 0.0 0.00576734529096257 0.0 7 0.0 0.0 0.0 0.00576734529096257 0.0 8 0.0 0.0 0.0 0.00576734529096257 0.0 9 0.0 0.0 0.0 0.00576734529096257 0.0 10 0.0 0.0 0.0 0.00576734529096257 0.0 11 0.0 0.0 0.0 0.00576734529096257 0.0 12 0.0 0.0 0.0 0.01153469058192514 0.0 13 0.0 0.0 0.0 0.01153469058192514 0.0 14 0.0 0.0 0.0 0.01153469058192514 0.0 15 0.0 0.0 0.0 0.01730203587288771 0.0 16 0.0 0.0 0.0 0.01730203587288771 0.0 17 0.0 0.0 0.0 0.01730203587288771 0.0 18 0.0 0.0 0.0 0.01730203587288771 0.0 19 0.0 0.0 0.0 0.02306938116385028 0.0 20 0.0 0.0 0.0 0.04613876232770056 0.0 21 0.0 0.0 0.0 0.05190610761866313 0.0 22 0.0 0.0 0.0 0.05190610761866313 0.0 23 0.0 0.0 0.0 0.05190610761866313 0.0 24 0.0 0.0 0.0 0.06920814349155084 0.0 25 0.0 0.0 0.0 0.06920814349155084 0.0 26 0.0 0.0 0.0 0.07497548878251341 0.0 27 0.0 0.0 0.0 0.08074283407347597 0.0 28 0.0 0.0 0.0 0.1153469058192514 0.0 29 0.0 0.0 0.0 0.19608973989272738 0.0 30 0.0 0.0 0.0 0.23646115692946537 0.0 31 0.0 0.0 0.0 0.2479958475113905 0.0 32 0.0 0.0 0.0 0.28259991925716593 0.0 33 0.0 0.0 0.0 0.3518080627487168 0.0 34 0.0 0.0 0.0 0.49022434973181844 0.0 35 0.0 0.0 0.0 0.6401753272968452 0.0 36 0.0 0.0 0.0 0.8074283407347598 0.0 37 0.0 0.0 0.0 1.0842609147009632 0.0 38 0.0 0.0 0.0 1.4187669415767923 0.0 39 0.0 0.0 0.0 1.7763423496164716 0.0 40 0.0 0.0 0.0 2.1569871388200013 0.0 41 0.0 0.0 0.0 2.5895380356421938 0.0 42 0.0 0.0 0.0 2.9471134436818733 0.0 43 0.0 0.0 0.0 3.4142684122498412 0.0 44 0.0 0.0 0.0 3.9390968337274352 0.0 45 0.0 0.0 0.0 4.377415075840591 0.0 46 0.0 0.0 0.0 4.902243497318184 0.0 47 0.0 0.0 0.0 5.305957667685564 0.0 48 0.0 0.0 0.0 5.657765730434281 0.0 49 0.0 0.0 0.0 6.1364553895841745 0.0 50 0.0 0.0 0.0 6.522867524078666 0.0 51 0.0 0.0 0.0 6.903512313282196 0.0 52 0.0 0.0 0.0 7.214948958994175 0.0 53 0.0 0.0 0.0 7.5321529499971165 0.0 54 0.0 0.0 0.0 7.889728358036796 0.0 55 0.0 0.0 0.0 8.218467039621663 0.0 56 0.0 0.0 0.0 8.524136340042679 0.0 57 0.0 0.0 0.0 8.766364842263107 0.0 58 0.0 0.0 0.0 9.135474940884711 0.0 59 0.0 0.0 0.0 9.435376896014764 0.0 60 0.0 0.0 0.0 9.76411557759963 0.0 61 0.0 0.0 0.0 10.035180806274871 0.0 62 0.0 0.0 0.0 10.30047868965915 0.0 63 0.0 0.0 0.0 10.508103120133802 0.0 64 0.0 0.0 0.0 10.877213218755406 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACTCC 15 0.0021879463 70.0 19 >>END_MODULE