##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781172_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 326093 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.63187188930765 34.0 33.0 34.0 24.0 34.0 2 31.590494122842255 34.0 33.0 34.0 24.0 34.0 3 31.4947085647346 34.0 33.0 34.0 23.0 34.0 4 31.681734965178645 34.0 34.0 34.0 23.0 34.0 5 31.721245166256253 34.0 34.0 34.0 23.0 34.0 6 34.53022910642056 37.0 34.0 38.0 26.0 38.0 7 34.45755965322776 37.0 34.0 38.0 25.0 38.0 8 34.233439540253855 37.0 34.0 38.0 24.0 38.0 9 34.594713777971315 38.0 35.0 38.0 26.0 38.0 10-11 34.466837681274974 38.0 34.0 38.0 25.5 38.0 12-13 34.430863281333856 38.0 34.0 38.0 25.0 38.0 14-15 34.316343803761505 37.5 34.0 38.0 24.5 38.0 16-17 34.290644080063046 37.5 34.0 38.0 24.5 38.0 18-19 34.34553026283913 37.5 34.0 38.0 24.5 38.0 20-21 34.27495683746662 37.0 34.0 38.0 24.5 38.0 22-23 34.3435063003499 37.5 34.0 38.0 24.5 38.0 24-25 34.32847684556246 37.5 34.0 38.0 24.5 38.0 26-27 34.25147120606698 37.0 34.0 38.0 24.0 38.0 28-29 34.33718141757106 37.0 34.0 38.0 24.5 38.0 30-31 34.410229597078136 38.0 34.0 38.0 25.0 38.0 32-33 34.372278767100184 37.5 34.0 38.0 24.5 38.0 34-35 34.365811286964146 38.0 34.0 38.0 24.5 38.0 36-37 34.23442852192473 37.0 34.0 38.0 24.0 38.0 38-39 34.24748001337042 37.0 34.0 38.0 24.0 38.0 40-41 34.24527665420601 37.0 34.0 38.0 24.0 38.0 42-43 34.323941329620695 37.0 34.0 38.0 24.5 38.0 44-45 34.320942185204835 37.0 34.0 38.0 24.5 38.0 46-47 34.32060945803805 37.0 34.0 38.0 24.5 38.0 48-49 34.280389336784296 37.0 34.0 38.0 24.5 38.0 50-51 34.16613052104768 37.0 34.0 38.0 24.0 38.0 52-53 34.25014489731457 37.0 34.0 38.0 24.0 38.0 54-55 34.20662970379615 37.0 34.0 38.0 24.0 38.0 56-57 34.18139610479219 37.0 34.0 38.0 24.0 38.0 58-59 34.180083595784026 37.0 34.0 38.0 24.0 38.0 60-61 34.16060449013012 37.0 34.0 38.0 24.0 38.0 62-63 34.12365030834762 37.0 34.0 38.0 24.0 38.0 64-65 34.16122854523096 37.0 34.0 38.0 24.0 38.0 66-67 34.05447372375365 37.0 34.0 38.0 24.0 38.0 68-69 33.836483763834245 37.0 34.0 38.0 23.5 38.0 70-71 33.9744965393308 37.0 34.0 38.0 24.0 38.0 72-73 33.957714517024286 37.0 34.0 38.0 23.5 38.0 74-75 33.96865618090544 37.0 34.0 38.0 24.0 38.0 76 32.62284685657159 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 26.0 14 119.0 15 334.0 16 792.0 17 1495.0 18 2058.0 19 2257.0 20 2299.0 21 2355.0 22 2600.0 23 2943.0 24 3636.0 25 4097.0 26 5040.0 27 5932.0 28 7098.0 29 8763.0 30 10398.0 31 12480.0 32 15284.0 33 19102.0 34 24218.0 35 32677.0 36 50152.0 37 109935.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.91915189838482 17.980760089913 9.01797953344598 25.082108478256202 2 24.130539447335575 20.030482101731714 31.019985096276216 24.81899335465649 3 19.991842817846443 21.42824286323227 29.443747642543695 29.136166676377595 4 14.359400539110009 16.46186824004195 36.54264274302116 32.63608847782688 5 13.928848518674119 33.66738936438378 36.03143888399935 16.372323232942747 6 30.35821069449513 36.63586768191896 18.55452278951097 14.451398834074942 7 29.36708239673958 29.245031325419436 21.928713587841507 19.45917268999948 8 25.875440441837146 33.7348547806914 19.743447421441125 20.646257356030333 9 25.036415991756954 15.820640124136364 21.162367790783613 37.98057609332307 10-11 25.56893278911231 24.17684525580126 27.485870595198303 22.768351359888133 12-13 25.639771476235307 22.5216425988905 26.646846145118108 25.191739779756084 14-15 23.792292382847837 23.577016372629895 23.88245071191347 28.748240532608794 16-17 24.152925699110376 26.547181325572765 25.05956889598979 24.240324079327063 18-19 23.548190240207546 26.526175048222438 26.035824136059343 23.889810575510666 20-21 23.421232593155942 26.47603597746655 26.152968631648026 23.94976279772948 22-23 23.95865596624276 25.89798002410355 26.30093255604996 23.842431453603727 24-25 23.712100535736738 26.11049608547255 26.134722303146646 24.042681075644065 26-27 22.808370618197877 26.337425213052718 26.59778038780348 24.256423780945926 28-29 23.492684602245372 25.88280030543434 27.264921356790854 23.359593735529437 30-31 23.823418472644306 25.919446292928704 26.452883073233707 23.80425216119328 32-33 23.15060427546743 26.464076199121113 26.469749427310614 23.91557009810085 34-35 23.98686877669867 25.82913463337146 26.534608225260893 23.649388364668976 36-37 23.94562287445606 25.76780243672817 26.151588657223552 24.134986031592216 38-39 23.26882208449737 26.255086739059102 26.852309003873128 23.6237821725704 40-41 23.400532976788828 25.378802979518113 27.50841017746471 23.712253866228348 42-43 23.16256405381287 25.547159859303942 27.025265798407204 24.265010288475988 44-45 22.681872962621092 25.616618572002466 27.180436255914724 24.521072209461718 46-47 23.009386892696256 25.148040589647742 27.40690539202007 24.435667125635938 48-49 22.35343904959628 25.09621488348416 28.172331206128316 24.378014860791247 50-51 22.373678674488566 25.131174235570835 27.987261302757187 24.50788578718341 52-53 22.01350534970085 25.25138534099168 28.153164894677285 24.581944414630183 54-55 21.42379627897563 25.6041988021822 28.160218097291263 24.811786821550907 56-57 21.39350244716215 25.55459808888289 28.246936447382947 24.80496301657201 58-59 21.50199482969582 25.440901828619445 27.838377395405605 25.21872594627913 60-61 21.37629660295775 25.19729831259535 27.812507187377815 25.613897897069084 62-63 21.054181028666758 24.962433914355458 28.341388319860656 25.641996737117132 64-65 21.501414475953908 25.11373306653787 27.880126037857355 25.504726419650865 66-67 21.646618674149206 24.96454226944809 27.367694749189265 26.021144307213444 68-69 21.398869030825658 25.171270684346748 27.124707137862934 26.30515314696466 70-71 21.8462552803269 25.136579344817804 27.145211864731632 25.871953510123664 72-73 21.91942764618574 24.821982753333415 26.955736417943406 26.302853182537444 74-75 21.8469021012475 25.394060571863154 26.665787569152265 26.09324975773708 76 22.10075039942593 25.539646665215137 26.317032257668828 26.042570677690108 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 2.0 12 2.0 13 8.0 14 12.0 15 18.0 16 39.0 17 52.0 18 72.5 19 129.5 20 214.0 21 262.0 22 324.0 23 499.5 24 751.5 25 890.0 26 1134.0 27 1506.5 28 2009.0 29 2383.0 30 2748.5 31 3546.5 32 4838.0 33 5697.0 34 6266.0 35 7483.5 36 9229.5 37 10327.0 38 11381.5 39 13689.0 40 16178.0 41 18118.0 42 18822.0 43 18947.5 44 19594.5 45 19832.5 46 19549.0 47 19489.0 48 18261.5 49 16352.0 50 15610.0 51 14567.5 52 12287.0 53 10387.0 54 9725.0 55 9110.5 56 7874.0 57 6842.5 58 6433.0 59 5865.0 60 4961.0 61 4378.5 62 4132.0 63 3967.0 64 3682.5 65 3484.5 66 3304.5 67 3203.0 68 3092.5 69 2816.5 70 2578.0 71 2505.0 72 2419.0 73 2213.0 74 1963.5 75 1834.0 76 1748.0 77 1480.0 78 1211.0 79 1124.0 80 954.0 81 694.5 82 518.5 83 432.0 84 375.5 85 272.5 86 158.0 87 90.0 88 77.5 89 52.5 90 33.5 91 22.0 92 17.0 93 11.5 94 5.0 95 3.0 96 2.0 97 1.0 98 1.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.066609832164444E-4 58-59 0.0 60-61 1.533304916082222E-4 62-63 3.066609832164444E-4 64-65 1.533304916082222E-4 66-67 1.533304916082222E-4 68-69 3.066609832164444E-4 70-71 1.533304916082222E-4 72-73 3.066609832164444E-4 74-75 3.066609832164444E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 326093.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.21492645308349 #Duplication Level Percentage of deduplicated Percentage of total 1 70.818516613816 34.85328086665426 2 14.792709590972395 14.560442291230583 3 6.06877227161905 8.96022543024732 4 2.5686735382006316 5.056683170581034 5 1.2077019684389012 2.9718481776982344 6 0.7102708796029024 2.0973557460854257 7 0.5033623427381272 1.7341058473976114 8 0.38781447083965476 1.5269008527852082 9 0.34058672587696426 1.5085755598438173 >10 2.4884100940701375 23.088515535460722 >50 0.10820649266816067 3.3546799283878235 >100 0.004975011157156813 0.28738659362796887 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.199829496493332E-4 0.0 2 0.0 0.0 0.0 9.199829496493332E-4 0.0 3 0.0 0.0 0.0 0.0012266439328657776 0.0 4 0.0 0.0 0.0 0.002146626882515111 0.0 5 0.0 0.0 0.0 0.002146626882515111 0.0 6 0.0 0.0 0.0 0.002146626882515111 0.0 7 0.0 0.0 0.0 0.002146626882515111 0.0 8 0.0 0.0 0.0 0.002146626882515111 0.0 9 0.0 0.0 0.0 0.002453287865731555 0.0 10 0.0 0.0 0.0 0.002453287865731555 0.0 11 0.0 0.0 0.0 0.002453287865731555 0.0 12 0.0 0.0 0.0 0.002453287865731555 0.0 13 0.0 0.0 0.0 0.0030666098321644438 0.0 14 0.0 0.0 0.0 0.004599914748246666 0.0 15 0.0 0.0 0.0 0.00490657573146311 0.0 16 0.0 0.0 0.0 0.00490657573146311 0.0 17 0.0 0.0 0.0 0.005519897697895999 0.0 18 0.0 0.0 0.0 0.0061332196643288876 0.0 19 0.0 0.0 0.0 0.006746541630761776 0.0 20 0.0 0.0 0.0 0.007053202613978221 0.0 21 0.0 0.0 0.0 0.007359863597194666 0.0 22 0.0 0.0 0.0 0.009506490479709776 0.0 23 0.0 0.0 0.0 0.010733134412575554 0.0 24 0.0 0.0 0.0 0.012266439328657775 0.0 25 0.0 0.0 0.0 0.012879761295090664 0.0 26 0.0 0.0 0.0 0.013186422278307108 0.0 27 0.0 0.0 0.0 0.019932963909068884 0.0 28 0.0 0.0 0.0 0.03219940323772666 0.0 29 0.0 0.0 0.0 0.045692486499250215 0.0 30 0.0 0.0 0.0 0.05857224779434088 0.0 31 0.0 0.0 0.0 0.07175867007264798 0.0 32 0.0 0.0 0.0 0.09107831201528398 0.0 33 0.0 0.0 0.0 0.1272643080348244 0.0 34 0.0 0.0 0.0 0.19258309745992708 0.0 35 0.0 0.0 0.0 0.28090146062626303 0.0 36 0.0 0.0 0.0 0.40509915882892306 0.0 37 0.0 0.0 0.0 0.6062687638189106 0.0 38 0.0 0.0 0.0 0.8868635634619572 0.0 39 0.0 0.0 0.0 1.1699116509707352 0.0 40 0.0 0.0 0.0 1.5244117475689452 0.0 41 0.0 0.0 0.0 1.8976181641433578 0.0 42 0.0 0.0 0.0 2.305477271821229 0.0 43 0.0 0.0 0.0 2.787241676454263 0.0 44 0.0 0.0 0.0 3.3659109517836936 0.0 45 0.0 0.0 0.0 4.031058624380162 0.0 46 0.0 0.0 0.0 4.780844728344368 0.0 47 0.0 0.0 0.0 5.568656794227413 0.0 48 0.0 0.0 0.0 6.353402250278295 0.0 49 0.0 0.0 0.0 7.0706822900215585 0.0 50 0.0 0.0 0.0 7.68983081513556 0.0 51 0.0 0.0 0.0 8.316339203846756 0.0 52 0.0 0.0 0.0 8.93180779716216 0.0 53 0.0 0.0 0.0 9.542063153762884 0.0 54 0.0 0.0 0.0 10.224690502402689 0.0 55 0.0 0.0 0.0 10.987356367661986 0.0 56 0.0 0.0 0.0 11.718129490666772 0.0 57 0.0 0.0 0.0 12.445222681872963 0.0 58 0.0 0.0 0.0 13.150849604254 0.0 59 0.0 0.0 0.0 13.830103682078425 0.0 60 0.0 0.0 0.0 14.521317538248292 0.0 61 0.0 0.0 0.0 15.153039163674167 0.0 62 0.0 0.0 0.0 15.765747808140622 0.0 63 0.0 0.0 0.0 16.37998975752316 0.0 64 0.0 0.0 0.0 17.027044432109857 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGA 20 0.0069475938 52.5 11 ATCGATA 20 0.0069475938 52.5 23 CCCAACG 45 9.1874055E-5 38.888885 21 CTACGGG 45 9.1874055E-5 38.888885 38 CGGGCTA 45 9.1874055E-5 38.888885 41 CGCAAAG 45 9.1874055E-5 38.888885 12 TTTACGG 50 1.7078024E-4 35.000004 36 TACGGAC 50 1.7078024E-4 35.000004 38 TATCCAC 75 1.4874968E-6 32.666668 65 TGGCGTA 45 0.0043039806 31.111109 67 GGACTAG 140 1.2732926E-11 30.0 1 CGTGCGA 60 4.9765577E-4 29.166666 10 CTCGCTA 60 4.9765577E-4 29.166666 13 CCAACGT 60 4.9765577E-4 29.166666 22 CGATTAG 50 0.0072029145 28.000002 52 TTGCGAT 50 0.0072029145 28.000002 49 CGATCAA 50 0.0072029145 28.000002 35 GACTAGG 100 4.4082662E-7 28.000002 2 TCACCGG 65 7.9470477E-4 26.923077 31 TAACGGC 65 7.9470477E-4 26.923077 36 >>END_MODULE