##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781171_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 190532 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.377039027564923 34.0 33.0 34.0 23.0 34.0 2 31.450695946087798 34.0 33.0 34.0 23.0 34.0 3 31.39497302290429 34.0 33.0 34.0 23.0 34.0 4 31.564193941175237 34.0 34.0 34.0 23.0 34.0 5 31.5164171897634 34.0 34.0 34.0 23.0 34.0 6 34.32364642159847 37.0 34.0 38.0 24.0 38.0 7 34.25995633279449 37.0 34.0 38.0 24.0 38.0 8 34.183633195473725 37.0 34.0 38.0 24.0 38.0 9 34.48048096907606 38.0 35.0 38.0 26.0 38.0 10-11 34.314314655805845 38.0 34.0 38.0 24.0 38.0 12-13 34.2929534146495 38.0 34.0 38.0 24.0 38.0 14-15 34.15874498771859 37.5 34.0 38.0 24.0 38.0 16-17 34.13358910839124 37.5 34.0 38.0 23.5 38.0 18-19 34.19118835681145 37.5 34.0 38.0 24.0 38.0 20-21 34.100156404173575 37.0 34.0 38.0 23.5 38.0 22-23 34.168483509331764 37.5 34.0 38.0 23.5 38.0 24-25 34.1596319778305 37.0 34.0 38.0 24.0 38.0 26-27 34.090155459450386 37.0 34.0 38.0 23.5 38.0 28-29 34.15206631956836 37.0 34.0 38.0 24.0 38.0 30-31 34.20672118069406 37.5 34.0 38.0 24.0 38.0 32-33 34.172784624105134 37.5 34.0 38.0 24.0 38.0 34-35 34.20015010601894 37.5 34.0 38.0 24.0 38.0 36-37 34.049597967795435 37.0 34.0 38.0 23.0 38.0 38-39 34.063217727205924 37.0 34.0 38.0 23.5 38.0 40-41 34.03447977242668 37.0 34.0 38.0 23.0 38.0 42-43 34.11797755757563 37.0 34.0 38.0 24.0 38.0 44-45 34.15917273738795 37.0 34.0 38.0 24.0 38.0 46-47 34.14029664308357 37.0 34.0 38.0 24.0 38.0 48-49 34.08507232380912 37.0 34.0 38.0 24.0 38.0 50-51 33.977253164822706 37.0 34.0 38.0 23.0 38.0 52-53 34.06885719984045 37.0 34.0 38.0 23.5 38.0 54-55 34.05277066319569 37.0 34.0 38.0 24.0 38.0 56-57 34.00376577162891 37.0 34.0 38.0 23.5 38.0 58-59 34.00267671572229 37.0 34.0 38.0 23.5 38.0 60-61 33.97571536539794 37.0 34.0 38.0 23.0 38.0 62-63 33.94718472487561 37.0 34.0 38.0 23.0 38.0 64-65 33.97027008586484 37.0 34.0 38.0 23.0 38.0 66-67 33.86453456637205 37.0 34.0 38.0 23.0 38.0 68-69 33.62900457665904 37.0 34.0 38.0 22.5 38.0 70-71 33.77140322885394 37.0 34.0 38.0 23.0 38.0 72-73 33.74034282955094 37.0 34.0 38.0 22.5 38.0 74-75 33.75068492431717 37.0 34.0 38.0 22.5 38.0 76 32.342451661663134 37.0 31.0 38.0 20.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 31.0 14 114.0 15 379.0 16 883.0 17 1541.0 18 1982.0 19 1945.0 20 1782.0 21 1556.0 22 1383.0 23 1630.0 24 1920.0 25 2178.0 26 2660.0 27 3070.0 28 3851.0 29 4625.0 30 5781.0 31 6937.0 32 8583.0 33 10930.0 34 14098.0 35 18794.0 36 29368.0 37 64504.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.09058845758192 18.81153821930174 10.0738983477841 26.023974975332226 2 23.169336384439358 19.84915919635547 31.171141855436357 25.81036256376882 3 19.944785887860768 21.522481905831597 28.421096829387345 30.111635376920294 4 14.584426762958453 15.844057691096507 36.15560640732266 33.41590913862238 5 14.578653454537822 33.37444628723784 35.166271282514224 16.880628975710117 6 31.091890076207672 35.288560451787625 18.02899250519598 15.590556966808725 7 30.177083114647406 27.47779900489157 22.38101736191296 19.964100518548065 8 26.71047383116747 32.72678605168686 19.321688745197658 21.241051371948018 9 24.881384754267 15.211617995927194 21.627338189910354 38.27965905989545 10-11 26.14154052862511 23.83221716037201 26.65037893897088 23.375863372031993 12-13 25.819022526399767 22.196271492452713 26.009804127390673 25.974901853756847 14-15 23.926164633762305 23.54014023891 23.29661159280331 29.237083534524384 16-17 24.42581823525707 25.747118594251884 24.793473012407365 25.03359015808368 18-19 23.854785547834485 25.444807171498752 25.996682971889236 24.703724308777527 20-21 23.64852098335188 25.87701803371612 25.690435202485673 24.784025780446328 22-23 24.223490017424893 25.287615728591522 26.23680011756555 24.25209413641803 24-25 23.790754308987466 25.500965717044906 26.001931434089816 24.706348539877816 26-27 23.008208594881697 25.735571977410622 26.30712951105326 24.949089916654422 28-29 23.725673377700335 25.398358281023658 27.105945457980813 23.770022883295194 30-31 24.071022190498184 25.348235467008166 26.113986102072097 24.466756240421557 32-33 23.23625427749669 26.08065836709844 26.039720361933956 24.643366993470913 34-35 24.333707723636973 25.140921210085445 26.329435475405706 24.195935590871876 36-37 24.403249847794598 24.732590850880694 25.932651733042217 24.931507568282495 38-39 23.358805869880126 25.367654777150296 26.742751873701003 24.53078747926857 40-41 23.842189238553104 24.438939390758506 27.272321709739046 24.446549660949344 42-43 23.184032078600968 24.543908634770013 26.969485440765855 25.302573845863165 44-45 22.591218273046 24.456784162240464 27.58932882665379 25.362668738059746 46-47 22.963596666176812 24.052390149686143 27.953047257153653 25.030965926983395 48-49 22.220939264795415 24.071022190498184 28.52617932945647 25.18185921524993 50-51 22.06742174542859 24.336856800957317 27.96485629710495 25.63086515650914 52-53 21.516333214368192 24.4853882812336 28.42488400898537 25.573394495412842 54-55 20.99516091785107 24.99343942224928 28.426983393865594 25.584416266034054 56-57 20.863686939726662 25.09316020406021 28.40493985262318 25.63821300358995 58-59 21.43419478092919 24.75410954590305 27.674353914303108 26.13734175886465 60-61 21.135032435496402 24.307202989524068 27.997396762748515 26.560367812231018 62-63 20.883631096088845 24.05947557365692 28.336709844015708 26.72018348623853 64-65 21.66040350177398 24.365198496840428 27.362332836478913 26.612065164906685 66-67 21.612117649528688 24.16050847101799 27.09912245712006 27.128251422333253 68-69 21.46752251590284 24.545483173430185 26.665599479352547 27.32139483131443 70-71 22.04432851174606 24.532362017928747 26.726481640879225 26.696827829445972 72-73 21.927025381563205 24.63575672328008 26.250708542397078 27.186509352759643 74-75 21.93017445888355 25.020993848802302 26.192188188860666 26.856643503453487 76 22.462893372241933 25.00839753952092 25.830306720131002 26.698402368106144 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 13.0 16 21.0 17 19.0 18 24.0 19 39.0 20 66.5 21 84.0 22 105.5 23 167.0 24 304.0 25 401.0 26 489.5 27 637.0 28 883.0 29 1070.0 30 1246.5 31 1564.0 32 2198.5 33 2692.0 34 3055.0 35 3874.5 36 4994.0 37 5657.0 38 6235.5 39 7738.0 40 9563.0 41 10809.5 42 11155.0 43 11473.0 44 11913.5 45 12183.0 46 12330.0 47 11887.5 48 10882.5 49 9895.0 50 9470.0 51 8698.0 52 7204.0 53 5943.5 54 5405.0 55 5032.5 56 4287.0 57 3577.5 58 3241.0 59 2932.5 60 2550.5 61 2289.5 62 2102.0 63 2069.5 64 2085.5 65 2085.0 66 2000.0 67 1964.0 68 1992.5 69 2001.5 70 1927.5 71 1873.0 72 1859.5 73 1756.5 74 1597.5 75 1528.0 76 1464.5 77 1246.5 78 991.0 79 890.0 80 801.0 81 595.5 82 434.0 83 389.0 84 330.5 85 214.0 86 121.0 87 86.0 88 77.5 89 50.0 90 21.5 91 9.0 92 6.0 93 4.0 94 2.5 95 3.0 96 3.0 97 2.5 98 2.0 99 3.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.248462200575232E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 190532.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.34007935674847 #Duplication Level Percentage of deduplicated Percentage of total 1 70.06031175857558 33.16660718409506 2 13.530233486330074 12.810446539164024 3 6.0611100024390785 8.608002855163436 4 2.8060489146100798 5.313543131862365 5 1.6075744473269915 3.8051350954170426 6 0.9955874853100957 2.8278714336699347 7 0.7838311270759883 2.597463943064682 8 0.5942482094946673 2.250540591606659 9 0.48448967826337613 2.064220183486239 >10 3.0200226169094657 24.88558352402746 >50 0.056542273664604535 1.6705855184430962 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0020993848802300925 0.0 2 0.0 0.0 0.0 0.0020993848802300925 0.0 3 0.0 0.0 0.0 0.0020993848802300925 0.0 4 0.0 0.0 0.0 0.0026242311002876158 0.0 5 0.0 0.0 0.0 0.0026242311002876158 0.0 6 0.0 0.0 0.0 0.0026242311002876158 0.0 7 0.0 0.0 0.0 0.0026242311002876158 0.0 8 0.0 0.0 0.0 0.0026242311002876158 0.0 9 0.0 0.0 0.0 0.0026242311002876158 0.0 10 0.0 0.0 0.0 0.0026242311002876158 0.0 11 0.0 0.0 0.0 0.0026242311002876158 0.0 12 0.0 0.0 0.0 0.0026242311002876158 0.0 13 0.0 0.0 0.0 0.0026242311002876158 0.0 14 0.0 0.0 0.0 0.0026242311002876158 0.0 15 0.0 0.0 0.0 0.0026242311002876158 0.0 16 0.0 0.0 0.0 0.0026242311002876158 0.0 17 0.0 0.0 0.0 0.0026242311002876158 0.0 18 0.0 0.0 0.0 0.003149077320345139 0.0 19 0.0 0.0 0.0 0.003149077320345139 0.0 20 0.0 0.0 0.0 0.0036739235404026622 0.0 21 0.0 0.0 0.0 0.0036739235404026622 0.0 22 0.0 0.0 0.0 0.005773308420632755 0.0 23 0.0 0.0 0.0 0.005773308420632755 0.0 24 0.0 0.0 0.0 0.007872693300862847 0.0 25 0.0 0.0 0.0 0.009447231961035417 0.0 26 0.0 0.0 0.0 0.010496924401150463 0.0 27 0.0 0.0 0.0 0.020469002582243403 0.0 28 0.0 0.0 0.0 0.04618646736506204 0.0 29 0.0 0.0 0.0 0.06560577750719039 0.0 30 0.0 0.0 0.0 0.08345054898914618 0.0 31 0.0 0.0 0.0 0.10601893645161968 0.0 32 0.0 0.0 0.0 0.1453824029559339 0.0 33 0.0 0.0 0.0 0.19419310142128357 0.0 34 0.0 0.0 0.0 0.2734448806499696 0.0 35 0.0 0.0 0.0 0.4104297440849831 0.0 36 0.0 0.0 0.0 0.6235173094283375 0.0 37 0.0 0.0 0.0 0.9389498876829089 0.0 38 0.0 0.0 0.0 1.2874477778011042 0.0 39 0.0 0.0 0.0 1.7671572229336805 0.0 40 0.0 0.0 0.0 2.2605126697877522 0.0 41 0.0 0.0 0.0 2.8278714336699347 0.0 42 0.0 0.0 0.0 3.4450905884575818 0.0 43 0.0 0.0 0.0 4.182499527638402 0.0 44 0.0 0.0 0.0 5.063191484894926 0.0 45 0.0 0.0 0.0 6.018411605399618 0.0 46 0.0 0.0 0.0 7.012470346188567 0.0 47 0.0 0.0 0.0 7.9787122373144665 0.0 48 0.0 0.0 0.0 8.900342199735478 0.0 49 0.0 0.0 0.0 9.735372535846997 0.0 50 0.0 0.0 0.0 10.504272248231269 0.0 51 0.0 0.0 0.0 11.259001112673987 0.0 52 0.0 0.0 0.0 12.003233052715554 0.0 53 0.0 0.0 0.0 12.842462158587534 0.0 54 0.0 0.0 0.0 13.651250183696177 0.0 55 0.0 0.0 0.0 14.573929838557303 0.0 56 0.0 0.0 0.0 15.469842336195494 0.0 57 0.0 0.0 0.0 16.29070182436546 0.0 58 0.0 0.0 0.0 17.066949383830536 0.0 59 0.0 0.0 0.0 17.781265089328826 0.0 60 0.0 0.0 0.0 18.51395041252913 0.0 61 0.0 0.0 0.0 19.24663573572943 0.0 62 0.0 0.0 0.0 19.992967060651228 0.0 63 0.0 0.0 0.0 20.74927046375412 0.0 64 0.0 0.0 0.0 21.51449625259799 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAAACTA 15 0.0022220486 70.0 1 CGAGAAT 30 8.353398E-6 58.333332 14 TCGTAAA 20 0.006943182 52.5 2 CGTAAAC 20 0.006943182 52.5 3 GTTTCAC 30 5.866993E-4 46.666664 43 CGTGCGA 40 4.5803146E-5 43.75 10 CCGAAGC 45 9.1730224E-5 38.888885 3 GATGTAT 50 1.7051422E-4 35.000004 24 TGCGATG 50 1.7051422E-4 35.000004 29 TGTGCGC 40 0.0024143874 35.0 4 ATCGGGC 55 2.9841546E-4 31.818184 44 ACAAGGT 55 2.9841546E-4 31.818184 5 CTTGTTG 45 0.0042995317 31.111109 13 CAACGGC 45 0.0042995317 31.111109 48 AGGCGAG 45 0.0042995317 31.111109 45 ATACTGG 45 0.0042995317 31.111109 6 TAGGGAT 45 0.0042995317 31.111109 5 AGCCTTA 45 0.0042995317 31.111109 6 TACACCG 45 0.0042995317 31.111109 5 CAGATAA 60 4.968884E-4 29.166666 14 >>END_MODULE