SRR1781171_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781171_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	171821
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	5242	3.0508494305119864	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	511	0.2974025293765023	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC	353	0.20544636569453092	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT	316	0.18391232736394272	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTAACTCGTATGCCGT	189	0.10999819579678852	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	770	59.545452	41
GCCGTCT	730	59.452053	46
TATGCCG	750	59.26667	43
TCGTATG	775	59.161293	40
CCGTCTT	735	59.047623	47
CTCGTAT	760	58.947372	39
GTCTTCT	760	58.486847	49
CGTCTTC	745	57.785233	48
CTTGAAA	765	57.64706	57
TCTCGTA	720	57.361107	38
GTATGCC	775	57.354843	42
CTGCTTG	765	57.189545	54
ATCTCGT	725	56.96552	37
TTATCTC	720	56.874996	35
TCTTCTG	775	56.451614	50
ATGCCGT	785	56.17835	44
TTGAAAA	795	55.4717	58
CTTCTGC	785	55.28663	51
AATTATC	745	54.966442	33
ATTATCT	745	54.966442	34