##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781171_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 171821 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.33283475244586 34.0 34.0 34.0 33.0 34.0 2 33.31758632530366 34.0 34.0 34.0 33.0 34.0 3 33.386023827122415 34.0 34.0 34.0 33.0 34.0 4 33.454181968443905 34.0 34.0 34.0 34.0 34.0 5 33.44761117674789 34.0 34.0 34.0 34.0 34.0 6 36.876563400282855 38.0 37.0 38.0 34.0 38.0 7 36.76670488473469 38.0 37.0 38.0 34.0 38.0 8 36.59115591225753 38.0 37.0 38.0 34.0 38.0 9 36.54381012798203 38.0 37.0 38.0 34.0 38.0 10-11 36.479824934088384 38.0 37.0 38.0 34.0 38.0 12-13 36.42205842126399 38.0 37.0 38.0 34.0 38.0 14-15 36.4154265194592 38.0 37.0 38.0 34.0 38.0 16-17 36.35381588979229 38.0 37.0 38.0 34.0 38.0 18-19 36.34663399700851 38.0 37.0 38.0 34.0 38.0 20-21 36.28710984105552 38.0 37.0 38.0 34.0 38.0 22-23 36.36038668148829 38.0 37.0 38.0 34.0 38.0 24-25 36.34940432193969 38.0 37.0 38.0 34.0 38.0 26-27 36.142264333230514 38.0 37.0 38.0 33.0 38.0 28-29 36.13040024211243 38.0 37.0 38.0 33.5 38.0 30-31 36.17617462359083 38.0 37.0 38.0 34.0 38.0 32-33 36.11607428661223 38.0 37.0 38.0 33.5 38.0 34-35 36.08088941398316 38.0 37.0 38.0 32.5 38.0 36-37 36.008479755093965 38.0 37.0 38.0 32.0 38.0 38-39 35.78362656485528 38.0 36.0 38.0 31.0 38.0 40-41 35.963776255521736 38.0 37.0 38.0 32.0 38.0 42-43 36.028666461026305 38.0 37.0 38.0 32.5 38.0 44-45 36.00635836131788 38.0 37.0 38.0 32.0 38.0 46-47 36.00547371974322 38.0 37.0 38.0 32.0 38.0 48-49 35.98836288928594 38.0 37.0 38.0 32.0 38.0 50-51 35.875562358501 38.0 36.5 38.0 31.5 38.0 52-53 35.90086194353426 38.0 37.0 38.0 32.0 38.0 54-55 35.92610914847428 38.0 37.0 38.0 32.0 38.0 56-57 35.88604710716385 38.0 37.0 38.0 32.0 38.0 58-59 35.84913660146315 38.0 37.0 38.0 31.5 38.0 60-61 35.84575808544939 38.0 36.5 38.0 31.5 38.0 62-63 35.804034431181286 38.0 36.0 38.0 31.0 38.0 64-65 35.76131555514169 38.0 36.0 38.0 31.0 38.0 66-67 35.68971778769766 38.0 36.0 38.0 31.0 38.0 68-69 35.56231485092043 38.0 36.0 38.0 31.0 38.0 70-71 35.27106698249923 38.0 36.0 38.0 29.0 38.0 72-73 35.04551248101221 38.0 36.0 38.0 27.0 38.0 74-75 35.05758609250324 38.0 36.0 38.0 27.0 38.0 76 34.17226648663435 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 11.0 22 18.0 23 42.0 24 126.0 25 264.0 26 502.0 27 880.0 28 1429.0 29 2375.0 30 3514.0 31 5143.0 32 7225.0 33 10175.0 34 14066.0 35 19718.0 36 28942.0 37 77389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.64101012099802 18.48493490318413 10.224012198741713 29.65004277707614 2 22.16841945978664 18.83355352372527 33.86489427951182 25.133132736976272 3 19.641952962676275 21.305893924491183 30.142997654535826 28.909155458296716 4 14.229343328231126 18.998841817938438 34.754773863497476 32.017040990332966 5 14.190931259857642 33.21130711612666 37.1660041554874 15.431757468528293 6 30.871662951560054 38.73798895362034 16.056826581151316 14.333521513668293 7 29.225764021859955 27.242304491301994 20.932831260439645 22.599100226398402 8 25.553337484940723 35.930997957176366 17.80690369628858 20.70876086159433 9 23.924898586319486 15.07382683141176 19.527880759627752 41.473393822641 10-11 25.48029635492751 25.09442966808481 26.801438706560898 22.62383527042678 12-13 25.060382607481042 21.55353536529295 26.39432898190559 26.991753045320422 14-15 22.884280734019708 22.482118018170073 22.154742435441534 32.478858812368685 16-17 25.47331234249597 26.815988732459946 23.48170479743454 24.228994127609546 18-19 25.326939081951565 25.006838512172553 24.0055057298002 25.660716676075683 20-21 22.975945897183696 24.899459321037593 24.00492372876424 28.11967105301447 22-23 23.44387473009702 26.508983185990072 24.307564267464397 25.73957781644851 24-25 25.06678461887662 26.639933419081487 24.348886341017685 23.944395621024206 26-27 24.518830643518548 27.2254264612591 24.666949907170835 23.58879298805152 28-29 23.250068385121725 24.75366806152915 25.172999807939654 26.823263745409463 30-31 22.996606933960344 28.599821907682994 24.42600147828263 23.977569680074033 32-33 24.65909289318535 27.575500084390146 24.38438840421136 23.38101861821314 34-35 23.633898068338564 26.65099143876476 26.614325373499163 23.100785119397514 36-37 23.43630871662952 26.13213751520478 26.652155440836683 23.779398327329023 38-39 22.556032149737227 25.147100761839358 27.068577182067383 25.228289906356032 40-41 22.89853975940077 23.68162215328743 27.521082987527716 25.898755099784076 42-43 24.670732913904587 23.76252029728613 27.31971062908492 24.247036159724363 44-45 22.14106541109643 25.861507033482518 27.725074350632344 24.272353204788704 46-47 24.09426088778438 23.344352552947544 26.617817379714936 25.943569179553137 48-49 23.353955570040917 23.162186228691485 26.9722560106157 26.5116021906519 50-51 21.378353053468434 23.386547628054778 28.733100144918254 26.501999173558527 52-53 20.577519627984938 23.634771069892505 30.9746771349253 24.813032167197257 54-55 20.08194574586343 24.139656968589403 29.198700973687735 26.579696311859436 56-57 21.926889029862473 23.985717694577495 26.936753947422027 27.150639328138006 58-59 20.18641493181858 24.06283283184244 30.026015446307497 25.72473679003149 60-61 21.962391093056148 25.50212139377608 26.818898737639753 25.71658877552802 62-63 19.307302366998215 27.878722624126272 26.216236664901267 26.597738343974253 64-65 19.96612753970702 28.27593833117023 25.112762700717607 26.64517142840514 66-67 19.98155056716001 28.433951612433873 24.53221666734567 27.052281153060452 68-69 19.746713149149407 28.60971592529435 24.16351901106384 27.48005191449241 70-71 20.386041287153493 27.577246087498036 24.118704931294776 27.9180076940537 72-73 20.358687238463286 26.375413948236826 24.19873007373953 29.067168739560355 74-75 20.48061645549729 26.626547395254363 24.058758824590708 28.834077324657635 76 21.298909912059642 26.689403507138245 23.70606619679783 28.305620384004282 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.0 15 8.5 16 12.5 17 10.0 18 16.5 19 37.0 20 60.5 21 70.0 22 93.5 23 148.0 24 240.0 25 301.0 26 406.5 27 550.5 28 725.5 29 862.0 30 1013.0 31 1277.0 32 1831.5 33 2273.0 34 2549.0 35 3197.5 36 4174.0 37 4778.0 38 5622.5 39 7721.5 40 9965.0 41 10942.5 42 10931.0 43 10932.5 44 10800.5 45 10489.5 46 10312.0 47 10224.5 48 9484.0 49 8575.5 50 8320.0 51 7676.5 52 6391.0 53 5234.5 54 4720.0 55 4344.5 56 3655.0 57 3064.0 58 2787.0 59 2438.5 60 2078.0 61 1983.5 62 1901.0 63 1852.5 64 1829.5 65 1865.0 66 1859.5 67 1844.0 68 1872.0 69 1896.5 70 1838.0 71 1783.0 72 1758.5 73 1680.5 74 1561.0 75 1495.0 76 1364.0 77 1166.0 78 968.5 79 838.0 80 752.5 81 561.5 82 399.5 83 343.0 84 268.0 85 154.5 86 95.5 87 75.0 88 59.0 89 31.0 90 12.0 91 3.5 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 171821.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.44070864446138 #Duplication Level Percentage of deduplicated Percentage of total 1 57.468405589840046 21.516578299509373 2 19.32660770079744 14.472037760227213 3 8.54797842408792 9.601271090262541 4 4.0633598109776 6.085402832017041 5 2.1793536553139234 4.079827262092526 6 1.4456482877617323 3.2475657806670895 7 1.0990035908038116 2.880323126975166 8 0.8596166700346644 2.574772583095198 9 0.6948438544403165 2.3413901676744984 >10 4.231241547620898 27.512352971988292 >50 0.06839626307689917 1.5236787121481077 >100 0.012435684195799846 0.8165474534544671 >500 0.0015544605244749807 0.2974025293765023 >1k 0.0 0.0 >5k 0.0015544605244749807 3.0508494305119864 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT 5242 3.0508494305119864 No Hit TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG 511 0.2974025293765023 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC 353 0.20544636569453092 No Hit CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT 316 0.18391232736394272 No Hit CTTATACACATCTCCGAGCCCACGAGACCAAGAATTAACTCGTATGCCGT 189 0.10999819579678852 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.82001035961844E-4 0.0 2 0.0 0.0 0.0 5.82001035961844E-4 0.0 3 0.0 0.0 0.0 5.82001035961844E-4 0.0 4 0.0 0.0 0.0 0.001164002071923688 0.0 5 0.0 0.0 0.0 0.001164002071923688 0.0 6 0.0 0.0 0.0 0.001164002071923688 0.0 7 0.0 0.0 0.0 0.001164002071923688 0.0 8 0.0 0.0 0.0 0.001164002071923688 0.0 9 0.0 0.0 0.0 0.001164002071923688 0.0 10 0.0 0.0 0.0 0.001164002071923688 0.0 11 0.0 0.0 0.0 0.001164002071923688 0.0 12 0.0 0.0 0.0 0.001164002071923688 0.0 13 0.0 0.0 0.0 0.001164002071923688 0.0 14 0.0 0.0 0.0 0.001164002071923688 0.0 15 0.0 0.0 0.0 0.001164002071923688 0.0 16 0.0 0.0 0.0 0.001164002071923688 0.0 17 0.0 0.0 0.0 0.001164002071923688 0.0 18 0.0 0.0 0.0 0.001746003107885532 0.0 19 0.0 0.0 0.0 0.001746003107885532 0.0 20 0.0 0.0 0.0 0.001746003107885532 0.0 21 0.0 0.0 0.0 0.002328004143847376 0.0 22 0.0 0.0 0.0 0.0029100051798092203 0.0 23 0.0 0.0 0.0 0.004074007251732908 0.0 24 0.0 0.0 0.0 0.004656008287694752 0.0 25 0.0 0.0 0.0 0.0058200103596184405 0.0 26 0.0 0.0 0.0 0.006984012431542128 0.0 27 0.0 0.0 0.0 0.01746003107885532 0.0 28 0.0 0.0 0.0 0.042486075625214614 0.0 29 0.0 0.0 0.0 0.06169210981195546 0.0 30 0.0 0.0 0.0 0.08206214607062001 0.0 31 0.0 0.0 0.0 0.1018501812933227 0.0 32 0.0 0.0 0.0 0.1425902538106518 0.0 33 0.0 0.0 0.0 0.19497034704721775 0.0 34 0.0 0.0 0.0 0.2781964951897614 0.0 35 0.0 0.0 0.0 0.42486075625214614 0.0 36 0.0 0.0 0.0 0.6500951571693797 0.0 37 0.0 0.0 0.0 0.9864917559553256 0.0 38 0.0 0.0 0.0 1.3566444148270584 0.0 39 0.0 0.0 0.0 1.8699693285454049 0.0 40 0.0 0.0 0.0 2.3943522619470263 0.0 41 0.0 0.0 0.0 3.0019613434911916 0.0 42 0.0 0.0 0.0 3.6468184913369144 0.0 43 0.0 0.0 0.0 4.4191338660582815 0.0 44 0.0 0.0 0.0 5.342187509093766 0.0 45 0.0 0.0 0.0 6.332753272300825 0.0 46 0.0 0.0 0.0 7.375699128744449 0.0 47 0.0 0.0 0.0 8.379068914742668 0.0 48 0.0 0.0 0.0 9.328894605432398 0.0 49 0.0 0.0 0.0 10.192584142799774 0.0 50 0.0 0.0 0.0 10.993417568283272 0.0 51 0.0 0.0 0.0 11.777372963723876 0.0 52 0.0 0.0 0.0 12.554344346732938 0.0 53 0.0 0.0 0.0 13.409303868560887 0.0 54 0.0 0.0 0.0 14.260189383137101 0.0 55 0.0 0.0 0.0 15.21583508418645 0.0 56 0.0 0.0 0.0 16.13132271375443 0.0 57 0.0 0.0 0.0 17.007234272877007 0.0 58 0.0 0.0 0.0 17.808067698360503 0.0 59 0.0 0.0 0.0 18.56699704925475 0.0 60 0.0 0.0 0.0 19.31254037632187 0.0 61 0.0 0.0 0.0 20.062739711676688 0.0 62 0.0 0.0 0.0 20.836219088469978 0.0 63 0.0 0.0 0.0 21.61668247769481 0.0 64 0.0 0.0 0.0 22.412859894890612 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGC 770 0.0 59.545452 41 GCCGTCT 730 0.0 59.452053 46 TATGCCG 750 0.0 59.26667 43 TCGTATG 775 0.0 59.161293 40 CCGTCTT 735 0.0 59.047623 47 CTCGTAT 760 0.0 58.947372 39 GTCTTCT 760 0.0 58.486847 49 CGTCTTC 745 0.0 57.785233 48 CTTGAAA 765 0.0 57.64706 57 TCTCGTA 720 0.0 57.361107 38 GTATGCC 775 0.0 57.354843 42 CTGCTTG 765 0.0 57.189545 54 ATCTCGT 725 0.0 56.96552 37 TTATCTC 720 0.0 56.874996 35 TCTTCTG 775 0.0 56.451614 50 ATGCCGT 785 0.0 56.17835 44 TTGAAAA 795 0.0 55.4717 58 CTTCTGC 785 0.0 55.28663 51 AATTATC 745 0.0 54.966442 33 ATTATCT 745 0.0 54.966442 34 >>END_MODULE