##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781170_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 255451 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.205225268251056 34.0 32.0 34.0 23.0 34.0 2 31.37182081886546 34.0 33.0 34.0 23.0 34.0 3 31.378056848475833 34.0 33.0 34.0 23.0 34.0 4 31.566272983859918 34.0 33.0 34.0 23.0 34.0 5 31.5690523818658 34.0 33.0 34.0 23.0 34.0 6 34.339059154201784 37.0 34.0 38.0 25.0 38.0 7 34.23399790957953 37.0 34.0 38.0 24.0 38.0 8 33.956938904134255 37.0 34.0 38.0 23.0 38.0 9 34.291417923593954 37.0 34.0 38.0 24.0 38.0 10-11 34.17781100876489 37.0 34.0 38.0 24.0 38.0 12-13 34.16445815440143 37.0 34.0 38.0 24.0 38.0 14-15 34.049070076061554 37.0 34.0 38.0 24.0 38.0 16-17 34.0243275618416 37.0 34.0 38.0 23.5 38.0 18-19 34.066846479363946 37.0 34.0 38.0 23.5 38.0 20-21 33.98903703645709 37.0 34.0 38.0 23.5 38.0 22-23 34.06873529561442 37.0 34.0 38.0 23.5 38.0 24-25 34.05709118382782 37.0 34.0 38.0 23.5 38.0 26-27 33.98891372513711 37.0 34.0 38.0 23.0 38.0 28-29 34.06145405576804 37.0 34.0 38.0 23.5 38.0 30-31 34.13679727227531 37.0 34.0 38.0 24.0 38.0 32-33 34.082974817088214 37.0 34.0 38.0 23.5 38.0 34-35 34.112197642600734 37.0 34.0 38.0 24.0 38.0 36-37 33.946637515609645 37.0 34.0 38.0 23.0 38.0 38-39 33.96833247863583 37.0 34.0 38.0 23.0 38.0 40-41 33.95484065437207 37.0 34.0 38.0 23.0 38.0 42-43 34.01864349718733 37.0 34.0 38.0 24.0 38.0 44-45 34.03719108557023 37.0 34.0 38.0 24.0 38.0 46-47 34.04819123824139 37.0 34.0 38.0 24.0 38.0 48-49 34.011865289233555 37.0 34.0 38.0 23.5 38.0 50-51 33.88549663144791 37.0 34.0 38.0 23.0 38.0 52-53 33.958518463423516 37.0 34.0 38.0 23.5 38.0 54-55 33.93171097392455 37.0 34.0 38.0 23.0 38.0 56-57 33.90498764929478 37.0 34.0 38.0 23.5 38.0 58-59 33.89638521673432 37.0 34.0 38.0 23.0 38.0 60-61 33.86238848154832 37.0 34.0 38.0 23.0 38.0 62-63 33.83980293676674 37.0 34.0 38.0 23.0 38.0 64-65 33.8620342061687 37.0 34.0 38.0 23.0 38.0 66-67 33.75855447815824 37.0 34.0 38.0 23.0 38.0 68-69 33.510739828773424 37.0 34.0 38.0 22.5 38.0 70-71 33.66619038484876 37.0 34.0 38.0 23.0 38.0 72-73 33.656049496772376 37.0 34.0 38.0 23.0 38.0 74-75 33.64335821742722 37.0 34.0 38.0 22.5 38.0 76 32.192710147934434 36.0 31.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 27.0 14 92.0 15 266.0 16 669.0 17 1214.0 18 1758.0 19 1945.0 20 2070.0 21 2125.0 22 2248.0 23 2661.0 24 3093.0 25 3658.0 26 4366.0 27 5347.0 28 6214.0 29 7495.0 30 8808.0 31 10638.0 32 12577.0 33 15528.0 34 19338.0 35 25412.0 36 38134.0 37 79766.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.96947751232135 17.576756403380685 9.722803981976973 25.73096210232099 2 24.232435966193126 19.474184873028484 30.592168361055545 25.701210799722844 3 20.504910922251234 20.886588817424865 28.272349687415588 30.336150572908306 4 15.036934676317571 15.504734763222691 35.2365032824299 34.221827278029835 5 14.948072233030993 32.69237544578021 34.85091074217756 17.50864157901124 6 31.664389648112557 34.72799088670626 18.094663947293217 15.512955517887972 7 31.2459140891991 27.54618302531601 21.459692856947125 19.748210028537763 8 27.2752895858697 32.55418847450196 19.52898990413034 20.641532035498 9 25.41857342504042 16.274353985695885 21.01851235657719 37.2885602326865 10-11 26.780674180175456 23.346160320374555 26.415633526586312 23.45753197286368 12-13 26.475136131782612 21.833541461963353 25.829415426050396 25.861906980203642 14-15 24.548347824044534 22.92005120355763 23.147687814884264 29.383913157513575 16-17 24.873459097830892 25.727047457242293 24.517617860176706 24.88187558475011 18-19 24.40663767219545 25.210118574599434 25.66421740372909 24.719026349476025 20-21 24.065672085840337 25.440103972973287 25.79555374611961 24.698670195066764 22-23 24.68947077913181 25.202485016695963 25.77206587564738 24.335978328524842 24-25 24.41681574940008 25.114405502425125 25.73194076359067 24.736837984584128 26-27 23.52642972624887 25.735463944161502 26.00870617065504 24.729400158934588 28-29 24.276475723328545 25.253179670465176 26.560279662244422 23.910064943961856 30-31 24.50274220887763 25.147288521086235 25.775393323964284 24.57457594607185 32-33 23.952343110811857 25.554803073779315 25.811603790942293 24.681250024466532 34-35 24.610590680795926 24.99148564695382 26.187996915259674 24.209926756990576 36-37 24.665199979643845 24.84507792101029 25.73507247965363 24.75464961969223 38-39 23.841558655084537 25.193285600761005 26.588856571318964 24.376299172835495 40-41 24.156883316174138 24.2784330458679 27.043542597210426 24.52114104074754 42-43 23.716094280312074 24.525838614841984 26.693964791682163 25.064102313163776 44-45 23.109911489874772 24.407224868957258 27.270592011775253 25.212271629392717 46-47 23.20660322331876 24.087398366027145 27.593354498514394 25.112643912139703 48-49 22.446966345796255 24.025742706037555 28.26021428767161 25.267076660494574 50-51 22.218938269961754 24.25748969469683 28.043538682565345 25.480033352776072 52-53 22.090146446872396 24.11401795256233 28.409557997424162 25.38627760314111 54-55 21.391186568069806 24.509592837765364 28.49450579563204 25.60471479853279 56-57 21.180382930581597 24.911039690586453 28.20834524037878 25.700232138453167 58-59 21.715906377348297 24.76247890984964 27.651486977933143 25.87012773486892 60-61 21.38198715213485 24.252987852856318 27.965050048737332 26.3999749462715 62-63 20.996198879628576 24.068412337395433 28.266869184305403 26.66851959867059 64-65 21.801049907810107 24.309163009735723 27.47904686221624 26.410740220237933 66-67 21.924361227789284 24.15805770969775 26.812774269820828 27.104806792692145 68-69 21.709055748460564 24.005778016136166 26.795941295982402 27.48922493942087 70-71 22.498443928581217 23.71315829650305 27.014182759120143 26.774215015795594 72-73 22.916136558478925 23.168631166055327 26.657362860196283 27.257869415269464 74-75 22.872096801343506 23.658548997655128 26.727239274851144 26.742114926150222 76 23.4526386665153 23.248294193406956 26.456737299912703 26.842329840165043 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 6.0 15 15.0 16 27.0 17 36.0 18 51.0 19 74.0 20 109.0 21 136.0 22 183.0 23 290.0 24 480.5 25 611.0 26 729.5 27 964.0 28 1282.5 29 1485.0 30 1696.5 31 2219.0 32 3163.0 33 3796.0 34 4212.0 35 5273.0 36 6702.5 37 7487.0 38 8284.0 39 10054.0 40 12080.5 41 13724.5 42 14315.0 43 14685.5 44 15139.0 45 15219.0 46 15216.0 47 15024.0 48 14284.5 49 13065.0 50 12393.0 51 11434.5 52 9559.5 53 7909.0 54 7175.0 55 6635.5 56 5570.0 57 4696.5 58 4349.0 59 4019.0 60 3556.5 61 3409.0 62 3394.0 63 3324.0 64 3251.0 65 3228.5 66 3199.0 67 3189.0 68 3131.5 69 3062.5 70 3022.5 71 2994.0 72 2922.5 73 2721.5 74 2476.0 75 2360.0 76 2170.5 77 1827.0 78 1486.5 79 1300.0 80 1161.0 81 890.5 82 635.5 83 512.0 84 424.0 85 280.5 86 175.0 87 125.0 88 97.5 89 58.0 90 34.5 91 17.0 92 11.0 93 7.0 94 4.0 95 5.5 96 6.0 97 3.5 98 1.5 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 255451.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.50662446799106 #Duplication Level Percentage of deduplicated Percentage of total 1 73.55651246687015 38.62204177273054 2 13.52762458182672 14.205798077238804 3 4.971748735170551 7.831492313604291 4 2.1583882724962615 4.533187299203087 5 1.1931538029392905 3.1324239331744366 6 0.7721075343558261 2.4324456213196726 7 0.5618810800303851 2.0651735205377264 8 0.48816993618955107 2.0505724412854334 9 0.3640520671964737 1.7203630661172982 >10 2.3521275148226963 21.580888642313692 >50 0.05423400810206899 1.825613312475017 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001174393523611182 0.0 2 0.0 0.0 0.0 0.001174393523611182 0.0 3 0.0 0.0 0.0 0.001174393523611182 0.0 4 0.0 0.0 0.0 0.00195732253935197 0.0 5 0.0 0.0 0.0 0.00195732253935197 0.0 6 0.0 0.0 0.0 0.00195732253935197 0.0 7 0.0 0.0 0.0 0.00195732253935197 0.0 8 0.0 0.0 0.0 0.00195732253935197 0.0 9 0.0 0.0 0.0 0.0027402515550927573 0.0 10 0.0 0.0 0.0 0.0027402515550927573 0.0 11 0.0 0.0 0.0 0.0027402515550927573 0.0 12 0.0 0.0 3.914645078703939E-4 0.0035231805708335453 0.0 13 0.0 0.0 3.914645078703939E-4 0.0035231805708335453 0.0 14 0.0 0.0 3.914645078703939E-4 0.0035231805708335453 0.0 15 0.0 0.0 3.914645078703939E-4 0.0035231805708335453 0.0 16 0.0 0.0 3.914645078703939E-4 0.0035231805708335453 0.0 17 0.0 0.0 3.914645078703939E-4 0.00391464507870394 0.0 18 0.0 0.0 3.914645078703939E-4 0.004306109586574333 0.0 19 0.0 0.0 3.914645078703939E-4 0.005089038602315121 0.0 20 0.0 0.0 3.914645078703939E-4 0.005871967618055909 0.0 21 0.0 0.0 3.914645078703939E-4 0.006654896633796697 0.0 22 0.0 0.0 3.914645078703939E-4 0.010178077204630242 0.0 23 0.0 0.0 3.914645078703939E-4 0.01096100622037103 0.0 24 0.0 0.0 3.914645078703939E-4 0.012526864251852605 0.0 25 0.0 0.0 3.914645078703939E-4 0.012918328759723 0.0 26 0.0 0.0 3.914645078703939E-4 0.013701257775463788 0.0 27 0.0 0.0 3.914645078703939E-4 0.02701105104305718 0.0 28 0.0 0.0 3.914645078703939E-4 0.04775866996018806 0.0 29 0.0 0.0 3.914645078703939E-4 0.06772335986157815 0.0 30 0.0 0.0 3.914645078703939E-4 0.08964537230232021 0.0 31 0.0 0.0 3.914645078703939E-4 0.11469910080602543 0.0 32 0.0 0.0 3.914645078703939E-4 0.1428845453726938 0.0 33 0.0 0.0 3.914645078703939E-4 0.17850781558889964 0.0 34 0.0 0.0 3.914645078703939E-4 0.2568007171629784 0.0 35 0.0 0.0 3.914645078703939E-4 0.37267421149261504 0.0 36 0.0 0.0 3.914645078703939E-4 0.5946345874551284 0.0 37 0.0 0.0 3.914645078703939E-4 0.917201341940333 0.0 38 0.0 0.0 3.914645078703939E-4 1.3035768112084118 0.0 39 0.0 0.0 3.914645078703939E-4 1.7596329628774208 0.0 40 0.0 0.0 3.914645078703939E-4 2.2732343972033777 0.0 41 0.0 0.0 3.914645078703939E-4 2.8416408626311895 0.0 42 0.0 0.0 3.914645078703939E-4 3.4206168697715023 0.0 43 0.0 0.0 3.914645078703939E-4 4.157744538091454 0.0 44 0.0 0.0 3.914645078703939E-4 5.014660345819746 0.0 45 0.0 0.0 3.914645078703939E-4 5.967876422484156 0.0 46 0.0 0.0 3.914645078703939E-4 6.953192588793937 0.0 47 0.0 0.0 3.914645078703939E-4 7.949078296816219 0.0 48 0.0 0.0 3.914645078703939E-4 8.872151606374608 0.0 49 0.0 0.0 3.914645078703939E-4 9.786612696759848 0.0 50 0.0 0.0 3.914645078703939E-4 10.610254021319157 0.0 51 0.0 0.0 3.914645078703939E-4 11.422934339658095 0.0 52 0.0 0.0 3.914645078703939E-4 12.259885457484996 0.0 53 0.0 0.0 3.914645078703939E-4 13.087441427123009 0.0 54 0.0 0.0 3.914645078703939E-4 13.970585356878619 0.0 55 0.0 0.0 3.914645078703939E-4 14.924975827066639 0.0 56 0.0 0.0 3.914645078703939E-4 15.81086000837734 0.0 57 0.0 0.0 3.914645078703939E-4 16.68343439642045 0.0 58 0.0 0.0 3.914645078703939E-4 17.478107347397348 0.0 59 0.0 0.0 3.914645078703939E-4 18.211320370638596 0.0 60 0.0 0.0 3.914645078703939E-4 18.995032315395125 0.0 61 0.0 0.0 3.914645078703939E-4 19.740772202888227 0.0 62 0.0 0.0 3.914645078703939E-4 20.53818540542022 0.0 63 0.0 0.0 3.914645078703939E-4 21.298018015196654 0.0 64 0.0 0.0 3.914645078703939E-4 22.08916778560272 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACCGG 25 2.3875061E-4 56.000004 22 ATCGAAG 30 5.870773E-4 46.666664 51 CGGCTTT 40 0.0024159243 35.0 26 GGCTAAA 40 0.0024159243 35.0 1 TCTAGCA 55 2.9869872E-4 31.818184 3 GACCGTC 45 0.004302252 31.111109 7 GTCTAGA 45 0.004302252 31.111109 48 GAATTCA 60 4.973576E-4 29.166666 57 TGTCATA 50 0.0072000395 28.000002 14 ACCTAGA 50 0.0072000395 28.000002 40 GTCGTTA 50 0.0072000395 28.000002 34 GAACCTT 50 0.0072000395 28.000002 28 CTGCATA 65 7.9423096E-4 26.923077 13 ACGGTGT 65 7.9423096E-4 26.923077 70 CGGGAAT 80 8.644792E-5 26.25 13 TATAAGA 80 8.644792E-5 26.25 2 TGGGGAC 70 0.0012239445 25.0 43 ACCGTCC 70 0.0012239445 25.0 8 GTATAAG 115 1.4902271E-6 24.347828 1 TAGCGGC 75 0.0018291486 23.333334 38 >>END_MODULE