##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781170_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 230973 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.25028033579682 34.0 34.0 34.0 32.0 34.0 2 33.282167179713646 34.0 34.0 34.0 33.0 34.0 3 33.314867971581094 34.0 34.0 34.0 33.0 34.0 4 33.3850363462396 34.0 34.0 34.0 33.0 34.0 5 33.37443337532958 34.0 34.0 34.0 33.0 34.0 6 36.75573335411498 38.0 37.0 38.0 34.0 38.0 7 36.67183177254484 38.0 37.0 38.0 34.0 38.0 8 36.4763846856559 38.0 37.0 38.0 34.0 38.0 9 36.42449550380348 38.0 37.0 38.0 34.0 38.0 10-11 36.343812913197645 38.0 37.0 38.0 34.0 38.0 12-13 36.26950985613037 38.0 37.0 38.0 34.0 38.0 14-15 36.2890619249869 38.0 37.0 38.0 34.0 38.0 16-17 36.21929835954852 38.0 37.0 38.0 34.0 38.0 18-19 36.2209565620224 38.0 37.0 38.0 34.0 38.0 20-21 36.17286219601425 38.0 37.0 38.0 33.5 38.0 22-23 36.22352179691998 38.0 37.0 38.0 34.0 38.0 24-25 36.21887190277651 38.0 37.0 38.0 34.0 38.0 26-27 35.99489550726708 38.0 36.5 38.0 32.0 38.0 28-29 35.98420378139436 38.0 37.0 38.0 32.0 38.0 30-31 36.01284349252943 38.0 37.0 38.0 32.0 38.0 32-33 35.960876379490244 38.0 37.0 38.0 32.0 38.0 34-35 35.97225866226788 38.0 37.0 38.0 32.0 38.0 36-37 35.90265095920302 38.0 36.0 38.0 31.5 38.0 38-39 35.751349724859615 38.0 36.0 38.0 31.0 38.0 40-41 35.85888177406017 38.0 36.0 38.0 31.5 38.0 42-43 35.890803254059996 38.0 36.0 38.0 31.5 38.0 44-45 35.85813493352037 38.0 36.0 38.0 31.0 38.0 46-47 35.882815307416884 38.0 36.0 38.0 31.5 38.0 48-49 35.84516155567967 38.0 36.0 38.0 31.0 38.0 50-51 35.7653405376386 38.0 36.0 38.0 31.0 38.0 52-53 35.79838985509129 38.0 36.0 38.0 31.0 38.0 54-55 35.81133509111454 38.0 36.0 38.0 31.0 38.0 56-57 35.759424261710244 38.0 36.0 38.0 31.0 38.0 58-59 35.73583275967321 38.0 36.0 38.0 31.0 38.0 60-61 35.73711212998922 38.0 36.0 38.0 31.0 38.0 62-63 35.70033726885826 38.0 36.0 38.0 31.0 38.0 64-65 35.663746411918275 38.0 36.0 38.0 31.0 38.0 66-67 35.60574179666022 38.0 36.0 38.0 31.0 38.0 68-69 35.532003740696965 38.0 36.0 38.0 31.0 38.0 70-71 35.39197438661662 38.0 36.0 38.0 30.0 38.0 72-73 35.28117572183762 38.0 36.0 38.0 28.5 38.0 74-75 35.29890723158118 38.0 36.0 38.0 29.0 38.0 76 34.378745567663756 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 5.0 21 12.0 22 18.0 23 78.0 24 191.0 25 327.0 26 726.0 27 1283.0 28 2100.0 29 3406.0 30 5067.0 31 7514.0 32 10487.0 33 14151.0 34 19391.0 35 26636.0 36 39438.0 37 100143.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 43.09248267113472 18.164460781130263 10.274361072506311 28.468695475228706 2 23.17716789408286 19.461582089681478 31.498053885086136 25.86319613114953 3 20.476419321738902 21.35747468318808 28.43882185363657 29.727284141436446 4 14.836366155351492 17.13187255653258 34.4360596260169 33.59570166209903 5 14.629848510431955 33.16621423283241 35.42838340412083 16.77555385261481 6 31.551306862706895 36.65320188939833 16.739618916496735 15.055872331398042 7 30.151143207214698 27.470310382598832 20.518848523420484 21.859697886765986 8 26.285756343815077 34.52005212730492 18.209920640074813 20.984270888805185 9 24.402419330397926 15.656375420503696 19.71615729977097 40.22504794932741 10-11 26.058024098054748 24.554601620102783 26.03118113372559 23.35619314811688 12-13 25.643040528546628 21.990882051148837 25.71707515597061 26.649002264333927 14-15 23.53327012248185 22.882544713018405 22.256281037177505 31.327904127322242 16-17 25.295380845380194 26.48361496798327 23.541496192195623 24.679507994440907 18-19 24.90810614227637 25.210738917535814 24.534252921337128 25.346902018850688 20-21 23.606005896793132 25.277846328358727 24.44138492377897 26.674762851069172 22-23 23.953665579959562 26.079022223376757 24.730812692392618 25.23649950427106 24-25 24.886242114879227 25.969052659834702 24.649634372848777 24.495070852437298 26-27 24.094591142687673 26.337710468323138 25.177834638680714 24.38986375030848 28-29 23.64756919639958 26.154788654951012 25.43479107947682 24.762851069172587 30-31 23.742168998108003 27.2215800115165 24.883644408653826 24.152606581721674 32-33 23.197949543886082 26.711347213743597 25.772276413260425 24.318426829109896 34-35 23.894351287812864 25.986803652374952 25.08345131249107 25.035393747321116 36-37 24.88451031072896 25.748897057231794 24.63794469483446 24.72864793720478 38-39 23.119585406086426 25.41985426868075 26.23639992553242 25.224160399700395 40-41 23.290817541444238 24.264091473895217 26.901196243716797 25.543894740943745 42-43 24.19784996514744 24.28725435440506 26.70766712992428 24.807228550523224 44-45 22.3842180687786 25.35902464790257 27.26184445801024 24.994912825308585 46-47 23.6235404138146 23.659042398895107 26.858117615478864 25.859299571811423 48-49 22.926056292293904 23.677442817991714 27.148844237205218 26.247656652509164 50-51 21.599277837669337 23.80602927614916 28.286856039450498 26.307836846731004 52-53 21.0723764249501 23.92400843388621 29.709100197858625 25.294514943305064 54-55 20.40346707190884 24.232486048152815 28.626722603940717 26.737324275997626 56-57 21.414840695665728 24.33877552787555 27.408181908707945 26.838201867750776 58-59 20.572750927597596 24.26495737597035 28.842115745130382 26.320175951301668 60-61 21.415273646703294 25.16073307269681 26.784732414611234 26.639260865988668 62-63 19.627185861550917 26.22903975789378 26.772393310040567 27.371381070514733 64-65 20.155602602901638 26.53383728834106 25.87856589298316 27.431994215774136 66-67 20.529672299359667 26.598563468457353 24.929970169673513 27.941794062509473 68-69 20.25561429257965 26.945140774029863 24.607421646685975 28.19182328670451 70-71 20.561494200620853 26.832140553224836 24.314097318734223 28.292267927420088 72-73 20.331813675191473 26.10434985907444 24.394193260684148 29.16964320504994 74-75 20.45368939226663 26.64813636225879 24.181614301238675 28.716559944235907 76 20.917163477982275 27.24647469617661 23.610984833725155 28.225376992115965 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.5 10 1.0 11 0.5 12 0.0 13 0.5 14 2.5 15 11.0 16 22.0 17 26.0 18 34.0 19 53.0 20 104.0 21 144.0 22 177.0 23 267.0 24 428.5 25 533.0 26 684.0 27 909.5 28 1204.0 29 1424.0 30 1577.5 31 2016.0 32 2896.0 33 3491.0 34 3756.5 35 4549.5 36 5695.5 37 6314.0 38 7295.0 39 9623.5 40 11958.0 41 13255.0 42 13565.0 43 13608.0 44 13705.5 45 13618.0 46 13476.0 47 13480.0 48 12718.5 49 11396.5 50 10840.0 51 10092.0 52 8278.5 53 6897.0 54 6581.0 55 5944.0 56 4945.0 57 4134.0 58 3685.0 59 3461.5 60 3147.5 61 2952.5 62 2848.0 63 2798.0 64 2795.5 65 2869.5 66 2839.5 67 2783.0 68 2810.5 69 2847.0 70 2792.5 71 2729.0 72 2701.5 73 2503.0 74 2332.0 75 2332.0 76 2108.0 77 1706.5 78 1385.0 79 1241.0 80 1125.5 81 875.5 82 618.5 83 496.0 84 397.0 85 232.0 86 145.0 87 124.0 88 98.5 89 51.0 90 22.5 91 9.0 92 2.0 93 4.5 94 3.5 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 230973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.406734120672 #Duplication Level Percentage of deduplicated Percentage of total 1 62.889999999926516 27.298495088458726 2 19.310999999977437 16.76454885206635 3 7.2059999999915805 9.383667782195909 4 2.9719999999965276 5.160192552259458 5 1.5470000001143323 3.3575108844821187 6 0.9869999999995457 2.5705467946250122 7 0.7269999999991555 2.208968699398432 8 0.6449999999992465 2.2397874806240585 9 0.4769999999994427 1.8634510957982717 >10 3.139999999996331 24.52089817208017 >50 0.08999999999989486 2.450310141109071 >100 0.006999999999991822 0.6059580083238731 >500 0.0 0.0 >1k 9.999999999988317E-4 1.5756644485785527 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT 3630 1.5716122663687964 No Hit TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG 357 0.15456352041147667 No Hit CTTATACACATCTCCGAGCCCACGAGACAAATACAGACCTCGTATGCCGT 273 0.1181956332558351 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0012988531127014846 0.0 2 0.0 0.0 0.0 0.0012988531127014846 0.0 3 0.0 0.0 0.0 0.0012988531127014846 0.0 4 0.0 0.0 0.0 0.0021647551878358076 0.0 5 0.0 0.0 0.0 0.0021647551878358076 0.0 6 0.0 0.0 0.0 0.0021647551878358076 0.0 7 0.0 0.0 0.0 0.0021647551878358076 0.0 8 0.0 0.0 0.0 0.0021647551878358076 0.0 9 0.0 0.0 0.0 0.003030657262970131 0.0 10 0.0 0.0 0.0 0.003030657262970131 0.0 11 0.0 0.0 0.0 0.003030657262970131 0.0 12 0.0 0.0 0.0 0.003463608300537292 0.0 13 0.0 0.0 0.0 0.003463608300537292 0.0 14 0.0 0.0 0.0 0.003463608300537292 0.0 15 0.0 0.0 0.0 0.003463608300537292 0.0 16 0.0 0.0 0.0 0.003463608300537292 0.0 17 0.0 0.0 0.0 0.0038965593381044537 0.0 18 0.0 0.0 0.0 0.004329510375671615 0.0 19 0.0 0.0 0.0 0.0047624614132387765 0.0 20 0.0 0.0 0.0 0.0051954124508059385 0.0 21 0.0 0.0 0.0 0.006061314525940262 0.0 22 0.0 0.0 0.0 0.008226069713776069 0.0 23 0.0 0.0 0.0 0.010390824901611877 0.0 24 0.0 0.0 0.0 0.010390824901611877 0.0 25 0.0 0.0 0.0 0.0112567269767462 0.0 26 0.0 0.0 0.0 0.012555580089447684 0.0 27 0.0 0.0 0.0 0.029007719516999823 0.0 28 0.0 0.0 0.0 0.054551830733462356 0.0 29 0.0 0.0 0.0 0.07619938261182042 0.0 30 0.0 0.0 0.0 0.09871283656531282 0.0 31 0.0 0.0 0.0 0.12728760504474548 0.0 32 0.0 0.0 0.0 0.1532646672987752 0.0 33 0.0 0.0 0.0 0.19266321171738687 0.0 34 0.0 0.0 0.0 0.28185112545622215 0.0 35 0.0 0.0 0.0 0.4121693877639378 0.0 36 0.0 0.0 0.0 0.6507254094634438 0.0 37 0.0 0.0 0.0 1.0066111623436507 0.0 38 0.0 0.0 0.0 1.4270066198213645 0.0 39 0.0 0.0 0.0 1.9114788308590183 0.0 40 0.0 0.0 0.0 2.4587289423439103 0.0 41 0.0 0.0 0.0 3.0700558073887425 0.0 42 0.0 0.0 0.0 3.694371203560589 0.0 43 0.0 0.0 0.0 4.476280777406883 0.0 44 0.0 0.0 0.0 5.392838123936564 0.0 45 0.0 0.0 0.0 6.4024799435431845 0.0 46 0.0 0.0 0.0 7.456282768981656 0.0 47 0.0 0.0 0.0 8.504457230931754 0.0 48 0.0 0.0 0.0 9.48422542894624 0.0 49 0.0 0.0 0.0 10.44234607508237 0.0 50 0.0 0.0 0.0 11.307382248141558 0.0 51 0.0 0.0 0.0 12.162893498374268 0.0 52 0.0 0.0 0.0 13.03961934944777 0.0 53 0.0 0.0 0.0 13.904222571469392 0.0 54 0.0 0.0 0.0 14.848488784403372 0.0 55 0.0 0.0 0.0 15.84341026873271 8.65902075134323E-4 56 0.0 0.0 0.0 16.768193684976165 8.65902075134323E-4 57 0.0 0.0 0.0 17.688647590843953 8.65902075134323E-4 58 0.0 0.0 0.0 18.5160170236348 8.65902075134323E-4 59 0.0 0.0 0.0 19.31178103068324 8.65902075134323E-4 60 0.0 0.0 0.0 20.11750291159573 8.65902075134323E-4 61 0.0 0.0 0.0 20.89075346469068 8.65902075134323E-4 62 0.0 0.0 0.0 21.722452407857194 8.65902075134323E-4 63 0.0 0.0 0.0 22.507825590004025 8.65902075134323E-4 64 0.0 0.0 0.0 23.32047468751759 8.65902075134323E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 25 2.8338054E-6 70.00001 39 TCGCTAC 15 0.0022226474 70.00001 13 ATATCGT 20 7.9152305E-5 70.0 37 CCGTCTT 570 0.0 58.94737 47 CGTATGC 590 0.0 56.94915 41 CGTCTTC 590 0.0 56.94915 48 TATGCCG 590 0.0 56.94915 43 TCGTATG 590 0.0 56.94915 40 ATCTCGT 480 0.0 56.875004 37 CTCGTAT 555 0.0 56.75676 39 TCTCGTA 480 0.0 56.145836 38 TCTTCTG 595 0.0 55.294117 50 GCCGTCT 625 0.0 54.88 46 GTATGCC 615 0.0 54.634148 42 AGATCTC 500 0.0 54.6 35 CTTGAAA 620 0.0 54.193546 57 ATGCCGT 630 0.0 53.88889 44 ACAGATC 515 0.0 53.68932 33 CAGATCT 520 0.0 53.173077 34 GATCTCG 515 0.0 53.00971 36 >>END_MODULE