##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781167_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 252568 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.38015900668335 34.0 33.0 34.0 23.0 34.0 2 31.55426261442463 34.0 33.0 34.0 23.0 34.0 3 31.510436793259636 34.0 33.0 34.0 23.0 34.0 4 31.663397580057648 34.0 34.0 34.0 23.0 34.0 5 31.67586946881632 34.0 34.0 34.0 23.0 34.0 6 34.535843812359445 38.0 35.0 38.0 26.0 38.0 7 34.55644816445472 38.0 34.0 38.0 26.0 38.0 8 34.29549665832568 38.0 34.0 38.0 24.0 38.0 9 34.540876120490324 38.0 35.0 38.0 26.0 38.0 10-11 34.407571426308955 38.0 34.0 38.0 25.0 38.0 12-13 34.38909917329194 38.0 34.0 38.0 25.0 38.0 14-15 34.27005994425264 38.0 34.0 38.0 24.0 38.0 16-17 34.23888022235596 37.5 34.0 38.0 24.0 38.0 18-19 34.28962497228469 37.5 34.0 38.0 24.0 38.0 20-21 34.21330889107092 37.0 34.0 38.0 24.0 38.0 22-23 34.29157494219379 37.5 34.0 38.0 24.5 38.0 24-25 34.261808701023085 37.5 34.0 38.0 24.0 38.0 26-27 34.200522235595955 37.0 34.0 38.0 24.0 38.0 28-29 34.295514475309616 37.0 34.0 38.0 24.5 38.0 30-31 34.339655063190904 38.0 34.0 38.0 24.5 38.0 32-33 34.288837065661525 37.5 34.0 38.0 24.0 38.0 34-35 34.3288896455608 38.0 34.0 38.0 24.5 38.0 36-37 34.1833664597257 37.0 34.0 38.0 24.0 38.0 38-39 34.190782284374905 37.0 34.0 38.0 24.0 38.0 40-41 34.17468760888157 37.0 34.0 38.0 24.0 38.0 42-43 34.24335426499002 37.0 34.0 38.0 24.0 38.0 44-45 34.26810799467866 37.0 34.0 38.0 24.0 38.0 46-47 34.24811139970225 37.0 34.0 38.0 24.0 38.0 48-49 34.216474375217764 37.0 34.0 38.0 24.0 38.0 50-51 34.088287114757215 37.0 34.0 38.0 24.0 38.0 52-53 34.16662047448608 37.0 34.0 38.0 24.0 38.0 54-55 34.132354455037856 37.0 34.0 38.0 24.0 38.0 56-57 34.11398514459472 37.0 34.0 38.0 24.0 38.0 58-59 34.10294851287574 37.0 34.0 38.0 24.0 38.0 60-61 34.07807996262393 37.0 34.0 38.0 24.0 38.0 62-63 34.04775545595642 37.0 34.0 38.0 24.0 38.0 64-65 34.04645283646384 37.0 34.0 38.0 24.0 38.0 66-67 33.950951822875425 37.0 34.0 38.0 23.0 38.0 68-69 33.742077381140916 37.0 34.0 38.0 22.5 38.0 70-71 33.919601849798866 37.0 34.0 38.0 23.0 38.0 72-73 33.887869801400015 37.0 34.0 38.0 23.0 38.0 74-75 33.901525529758324 37.0 34.0 38.0 23.5 38.0 76 32.540769218586675 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 8.0 13 28.0 14 92.0 15 362.0 16 822.0 17 1384.0 18 1859.0 19 2033.0 20 1969.0 21 1962.0 22 2054.0 23 2357.0 24 2684.0 25 3191.0 26 3770.0 27 4580.0 28 5498.0 29 6435.0 30 7987.0 31 9435.0 32 11634.0 33 14455.0 34 18478.0 35 24819.0 36 38003.0 37 86667.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.96754933324887 17.915967185074912 9.529314877577523 25.587168604098697 2 23.439628139748503 20.16803395521206 31.414510151721515 24.977827753317918 3 20.247616483481675 21.741471603686925 28.878955370434895 29.1319565423965 4 14.292784517436887 16.390833359728866 36.82057901238478 32.49580311044946 5 14.164106300085521 33.73507332678724 35.62446549048177 16.476354882645467 6 30.70103892813025 36.8574007791961 17.822527002628995 14.619033290044662 7 29.76940863450635 29.045247220550507 21.597352000253398 19.587992144689746 8 25.970035792341072 34.30957207563903 19.40269551170378 20.317696620316113 9 25.23201672420893 15.330920781730068 21.10599917645941 38.3310633176016 10-11 25.725547179373475 24.03709100123531 27.351643913718288 22.885717905672927 12-13 25.89678819169491 22.29181844097431 26.254909568908175 25.5564837984226 14-15 23.971960026606695 23.68629438408666 23.380436159766873 28.961309429539767 16-17 24.315233917202498 26.179484336891452 24.826779322796234 24.678502423109816 18-19 23.560981597035255 26.09534857939248 26.153946659909412 24.189723163662855 20-21 23.76884640967977 26.171961610338602 25.88807766621266 24.171114313768964 22-23 24.24317411548573 25.708522061385448 26.154738525862342 23.893565297266477 24-25 23.861890659149218 25.926285198441608 25.915001108612334 24.296823033796837 26-27 23.1842513699281 25.85323556428368 26.396455607994678 24.566057457793544 28-29 23.497038421336036 25.845910804219063 27.117251591650565 23.539799182794336 30-31 24.167550916980773 25.66536536695068 26.321822241930885 23.845261474137658 32-33 23.519804567482815 26.18839282886193 26.06030851097526 24.23149409267999 34-35 24.19882962212157 25.354360013936837 26.339243292895382 24.107567071046212 36-37 24.28375724557347 25.415135725824335 25.85184979886605 24.44925722973615 38-39 23.667685534192774 26.05080611954008 26.5724478160337 23.70906053023344 40-41 23.67441639479269 24.965751797535713 27.465276677963956 23.894555129707644 42-43 23.4263643850369 25.239143517785312 26.771008203731274 24.563483893446517 44-45 22.950254980836842 25.05384688479934 27.09408951252732 24.901808621836498 46-47 23.113775300117194 24.689588546450857 27.3878717810649 24.808764372367044 48-49 22.45850622406639 24.745415096132525 27.945543378416904 24.850535301384184 50-51 22.478104906401445 24.855484463590003 27.631370561591336 25.03504006841722 52-53 22.072669538500524 24.8723116150898 28.287035570618606 24.767983275791075 54-55 21.582504513635932 25.300117196161032 28.179341801019923 24.93803648918311 56-57 21.502215253774246 25.19133536843689 28.058891304089606 25.247558073699256 58-59 21.70845417561642 24.974709731061992 27.80108287883437 25.51575321448722 60-61 21.311770738061583 25.06899159430963 27.69839290168549 25.920844765943297 62-63 21.07674186108664 24.729626733447493 28.17009314341711 26.023538262048756 64-65 21.833723987203445 24.808764372367044 27.38688194862374 25.97062969180577 66-67 21.907806823918357 24.593227553030378 27.180456709592487 26.31850891345878 68-69 21.858909004523543 24.57244103061558 26.7512645134469 26.817385451413976 70-71 22.33007017925901 24.218476248923555 27.10225979193681 26.349193779880625 72-73 22.615295682746826 23.775577270279687 26.913544075258937 26.69558297171455 74-75 22.601042095594057 24.217438472015456 27.028958537898706 26.152560894491785 76 22.8409774793323 24.263564663773714 26.73220677203763 26.163251084856356 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 3.0 14 11.5 15 14.0 16 24.5 17 38.0 18 45.5 19 68.5 20 109.0 21 134.0 22 170.5 23 290.0 24 510.0 25 647.0 26 797.5 27 1089.5 28 1410.5 29 1590.0 30 1892.0 31 2430.5 32 3291.0 33 3915.0 34 4376.5 35 5432.0 36 6850.5 37 7675.0 38 8342.0 39 10042.0 40 11872.5 41 13328.0 42 13986.0 43 14459.5 44 15057.0 45 15356.0 46 15531.0 47 15304.0 48 14355.5 49 13124.5 50 12615.0 51 11654.5 52 9797.0 53 8542.5 54 8185.0 55 7647.0 56 6582.0 57 5606.5 58 5158.0 59 4743.5 60 4128.0 61 3645.5 62 3364.0 63 3226.0 64 2959.0 65 2743.0 66 2615.0 67 2574.0 68 2472.5 69 2297.0 70 2152.5 71 2082.0 72 2016.5 73 1854.5 74 1632.5 75 1507.0 76 1436.5 77 1231.5 78 981.0 79 865.0 80 784.5 81 601.5 82 420.0 83 341.0 84 278.0 85 187.5 86 121.5 87 83.0 88 60.0 89 30.5 90 19.5 91 15.5 92 16.0 93 9.0 94 2.5 95 4.5 96 6.0 97 3.5 98 1.0 99 3.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.9593297646574386E-4 58-59 1.9796648823287193E-4 60-61 3.9593297646574386E-4 62-63 1.9796648823287193E-4 64-65 0.0 66-67 1.9796648823287193E-4 68-69 1.9796648823287193E-4 70-71 1.9796648823287193E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 252568.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.67804073684545 #Duplication Level Percentage of deduplicated Percentage of total 1 71.77777501539882 36.375570062305094 2 14.396338748328908 14.591564830984783 3 5.617303441705503 8.540217979499209 4 2.326750288556721 4.716605836317777 5 1.1945130131189825 3.0267789569767904 6 0.7366501115220946 2.2399190616311078 7 0.5489493611555017 1.947377466097266 8 0.4512895728216188 1.8296377084454065 9 0.3692958306294384 1.6843670233727273 >10 2.522578965281307 23.151539885356193 >50 0.055432683402138944 1.724702683686713 >100 0.0031229680789937432 0.17171850532691751 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.9593297646574386E-4 0.0 2 0.0 0.0 0.0 3.9593297646574386E-4 0.0 3 0.0 0.0 0.0 3.9593297646574386E-4 0.0 4 0.0 0.0 0.0 0.0011877989293972316 0.0 5 0.0 0.0 0.0 0.0019796648823287195 0.0 6 0.0 0.0 0.0 0.0019796648823287195 0.0 7 0.0 0.0 0.0 0.002375597858794463 0.0 8 0.0 0.0 0.0 0.002375597858794463 0.0 9 0.0 0.0 0.0 0.003167463811725951 0.0 10 3.9593297646574386E-4 0.0 0.0 0.003167463811725951 0.0 11 3.9593297646574386E-4 0.0 0.0 0.003167463811725951 0.0 12 3.9593297646574386E-4 0.0 0.0 0.003167463811725951 0.0 13 3.9593297646574386E-4 0.0 0.0 0.003563396788191695 0.0 14 3.9593297646574386E-4 0.0 0.0 0.003563396788191695 0.0 15 3.9593297646574386E-4 0.0 0.0 0.003563396788191695 0.0 16 3.9593297646574386E-4 0.0 0.0 0.003563396788191695 0.0 17 3.9593297646574386E-4 0.0 0.0 0.004751195717588926 0.0 18 3.9593297646574386E-4 0.0 0.0 0.004751195717588926 0.0 19 3.9593297646574386E-4 0.0 0.0 0.0055430616705204145 0.0 20 3.9593297646574386E-4 0.0 0.0 0.006334927623451902 0.0 21 3.9593297646574386E-4 0.0 0.0 0.00712679357638339 0.0 22 3.9593297646574386E-4 0.0 0.0 0.008710525482246365 0.0 23 3.9593297646574386E-4 0.0 0.0 0.009502391435177853 0.0011877989293972316 24 3.9593297646574386E-4 0.0 0.0 0.010294257388109341 0.0011877989293972316 25 3.9593297646574386E-4 0.0 0.0 0.010690190364575084 0.0011877989293972316 26 3.9593297646574386E-4 0.0 0.0 0.011086123341040829 0.0011877989293972316 27 3.9593297646574386E-4 0.0 0.0 0.020588514776218682 0.0011877989293972316 28 3.9593297646574386E-4 0.0 0.0 0.034446168952519715 0.0011877989293972316 29 3.9593297646574386E-4 0.0 0.0 0.05107535396408096 0.0011877989293972316 30 3.9593297646574386E-4 0.0 0.0 0.060577745399258816 0.0011877989293972316 31 3.9593297646574386E-4 0.0 0.0 0.08274999208134047 0.0011877989293972316 32 3.9593297646574386E-4 0.0 0.0 0.10769376959868233 0.0011877989293972316 33 3.9593297646574386E-4 0.0 0.0 0.14491146938646227 0.0011877989293972316 34 3.9593297646574386E-4 0.0 0.0 0.20152988502106364 0.0011877989293972316 35 3.9593297646574386E-4 0.0 0.0 0.28586360900826707 0.0011877989293972316 36 3.9593297646574386E-4 0.0 0.0 0.4485920623356878 0.0011877989293972316 37 7.918659529314877E-4 0.0 0.0 0.694070507744449 0.0011877989293972316 38 7.918659529314877E-4 0.0 0.0 0.9811219156821134 0.0011877989293972316 39 7.918659529314877E-4 0.0 0.0 1.3406290583130087 0.0011877989293972316 40 7.918659529314877E-4 0.0 0.0 1.7231003135789174 0.0011877989293972316 41 7.918659529314877E-4 0.0 0.0 2.101216306103703 0.0011877989293972316 42 7.918659529314877E-4 0.0 0.0 2.5608944917804313 0.0011877989293972316 43 7.918659529314877E-4 0.0 0.0 3.11361692692661 0.0011877989293972316 44 7.918659529314877E-4 0.0 0.0 3.736419498907225 0.0011877989293972316 45 7.918659529314877E-4 0.0 0.0 4.484336891451015 0.0011877989293972316 46 7.918659529314877E-4 0.0 0.0 5.2773906433119 0.0011877989293972316 47 7.918659529314877E-4 0.0 0.0 6.145275727724811 0.0011877989293972316 48 7.918659529314877E-4 0.0 0.0 6.968816318773558 0.0011877989293972316 49 7.918659529314877E-4 0.0 0.0 7.744844952646416 0.0011877989293972316 50 7.918659529314877E-4 0.0 0.0 8.437331728485002 0.0011877989293972316 51 7.918659529314877E-4 0.0 0.0 9.097747933229863 0.0011877989293972316 52 7.918659529314877E-4 0.0 0.0 9.78548351335086 0.0011877989293972316 53 7.918659529314877E-4 0.0 0.0 10.40868201830794 0.0011877989293972316 54 7.918659529314877E-4 0.0 0.0 11.065138893288145 0.0011877989293972316 55 7.918659529314877E-4 0.0 0.0 11.818203414525989 0.0011877989293972316 56 7.918659529314877E-4 0.0 0.0 12.600566976022298 0.0011877989293972316 57 7.918659529314877E-4 0.0 0.0 13.395204459789047 0.0011877989293972316 58 7.918659529314877E-4 0.0 0.0 14.141538120426974 0.0011877989293972316 59 7.918659529314877E-4 0.0 0.0 14.822542839948053 0.0011877989293972316 60 7.918659529314877E-4 0.0 0.0 15.534826264609928 0.0011877989293972316 61 7.918659529314877E-4 0.0 0.0 16.21543505115454 0.0011877989293972316 62 7.918659529314877E-4 0.0 0.0 16.820816572170664 0.0011877989293972316 63 7.918659529314877E-4 0.0 0.0 17.435304551645498 0.0011877989293972316 64 7.918659529314877E-4 0.0 0.0 18.109182477590192 0.0011877989293972316 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTCGTT 15 0.002222889 70.00001 1 GTACGCT 15 0.002222889 70.00001 6 ACGTTTG 20 0.00694579 52.5 60 ACAATCG 45 9.181519E-5 38.888885 38 CATCGTT 45 9.181519E-5 38.888885 32 GATTCCG 45 9.181519E-5 38.888885 44 GAATTCG 55 6.6784796E-6 38.181816 23 TTCGAAC 55 6.6784796E-6 38.181816 26 TCGAACA 55 6.6784796E-6 38.181816 27 TCGTTGT 50 1.7067141E-4 35.0 34 ATTCCGC 50 1.7067141E-4 35.0 45 GCGGAAT 40 0.0024158729 35.0 19 CGGTAAG 40 0.0024158729 35.0 28 TACCGCG 40 0.0024158729 35.0 60 AGTCATA 55 2.986893E-4 31.81818 10 CGGATAG 55 2.986893E-4 31.81818 30 GCTAGTC 55 2.986893E-4 31.81818 7 CGTATTG 45 0.0043021603 31.111109 57 CCGGAAT 45 0.0043021603 31.111109 56 CGAGAAT 45 0.0043021603 31.111109 14 >>END_MODULE