##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781167_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 227473 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.28742312274424 34.0 34.0 34.0 33.0 34.0 2 33.3122656315255 34.0 34.0 34.0 33.0 34.0 3 33.35714128709781 34.0 34.0 34.0 33.0 34.0 4 33.42874978568885 34.0 34.0 34.0 34.0 34.0 5 33.406215243127754 34.0 34.0 34.0 34.0 34.0 6 36.832661458722576 38.0 37.0 38.0 34.0 38.0 7 36.75211123957568 38.0 37.0 38.0 34.0 38.0 8 36.55287440707249 38.0 37.0 38.0 34.0 38.0 9 36.509357154475474 38.0 37.0 38.0 34.0 38.0 10-11 36.431147872494755 38.0 37.0 38.0 34.0 38.0 12-13 36.36460151314661 38.0 37.0 38.0 34.0 38.0 14-15 36.372516738250255 38.0 37.0 38.0 34.0 38.0 16-17 36.30135005033564 38.0 37.0 38.0 34.0 38.0 18-19 36.30518786845032 38.0 37.0 38.0 34.0 38.0 20-21 36.25039235425743 38.0 37.0 38.0 34.0 38.0 22-23 36.30642317989388 38.0 37.0 38.0 34.0 38.0 24-25 36.295525183208554 38.0 37.0 38.0 34.0 38.0 26-27 36.0600818558686 38.0 37.0 38.0 33.0 38.0 28-29 36.02913532595077 38.0 37.0 38.0 32.0 38.0 30-31 36.069225798226604 38.0 37.0 38.0 32.5 38.0 32-33 36.04132578371939 38.0 37.0 38.0 32.0 38.0 34-35 36.04256988741521 38.0 37.0 38.0 32.0 38.0 36-37 36.01113318943347 38.0 37.0 38.0 32.0 38.0 38-39 35.86055268097752 38.0 36.5 38.0 31.0 38.0 40-41 35.95411982960615 38.0 37.0 38.0 32.0 38.0 42-43 35.98460476627996 38.0 37.0 38.0 32.0 38.0 44-45 35.95052819455496 38.0 37.0 38.0 32.0 38.0 46-47 35.971401001437535 38.0 37.0 38.0 32.0 38.0 48-49 35.95658605636713 38.0 37.0 38.0 32.0 38.0 50-51 35.84942168960712 38.0 36.5 38.0 31.5 38.0 52-53 35.87579405028289 38.0 37.0 38.0 32.0 38.0 54-55 35.88768557147442 38.0 37.0 38.0 32.0 38.0 56-57 35.84442549225622 38.0 36.0 38.0 31.5 38.0 58-59 35.82983255155557 38.0 36.5 38.0 31.0 38.0 60-61 35.82247123834477 38.0 36.0 38.0 31.0 38.0 62-63 35.796793465598114 38.0 36.0 38.0 31.0 38.0 64-65 35.73728530418995 38.0 36.0 38.0 31.0 38.0 66-67 35.69727176412145 38.0 36.0 38.0 31.0 38.0 68-69 35.60263635684235 38.0 36.0 38.0 31.0 38.0 70-71 35.4433954799031 38.0 36.0 38.0 30.0 38.0 72-73 35.304143788493576 38.0 36.0 38.0 28.5 38.0 74-75 35.3072760283638 38.0 36.0 38.0 28.5 38.0 76 34.385953497777756 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 3.0 21 12.0 22 32.0 23 79.0 24 150.0 25 377.0 26 661.0 27 1109.0 28 1828.0 29 3123.0 30 4629.0 31 6976.0 32 9796.0 33 13637.0 34 18555.0 35 26080.0 36 38751.0 37 101672.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.390323247154605 18.050933517384482 9.152294997648072 28.406448237812835 2 23.08405832780154 19.998857007205253 31.730798820079748 25.186285844913463 3 20.446382647610925 21.41484923485425 29.8329911681826 28.30577694935223 4 14.25399937575009 17.74760081416256 35.58664105190506 32.41175875818229 5 14.026719654640333 33.38637992201272 36.55774531482857 16.029155108518374 6 30.715733295819724 38.256408452871334 16.802873308040954 14.224984943267993 7 28.86408496832591 28.60823042734742 21.005569891811334 21.522114712515332 8 25.32476381812347 35.948442232704544 18.39383135580926 20.33296259336273 9 24.500929780677268 15.344238656895543 19.969842574723152 40.18498898770403 10-11 25.369164692073344 25.10935363757457 27.159487060002725 22.36199461034936 12-13 25.269812241452833 21.981729699788545 26.376536995599476 26.371921063159142 14-15 23.34496841383373 22.953273575325422 22.84600809766434 30.85574991317651 16-17 24.912407186787004 26.95638603262805 23.89997933820717 24.231227442377776 18-19 24.37607979848158 25.730306453952778 25.214201245862146 24.6794125017035 20-21 23.18121271535523 25.67469545836209 24.89921880838605 26.24487301789663 22-23 23.431572098666656 26.413024842508783 25.17551533588602 24.979887722938546 24-25 24.57676295648275 26.578099378827382 24.94405929494929 23.901078369740585 26-27 23.787658315492386 26.72361115385123 25.52808465180483 23.960645878851555 28-29 22.98734355286122 25.398398930862125 27.360170218003894 24.25408729827276 30-31 23.282323616429203 25.348502899245183 26.586232212174632 24.78294127215098 32-33 22.918104566256215 26.780980599895372 26.70954355022354 23.59137128362487 34-35 23.45355272933491 25.033960074382456 28.014973205611216 23.497513990671422 36-37 23.444760477067607 27.410286055927518 25.264097277479085 23.88085618952579 38-39 22.758525187604683 25.80350195407807 26.842306559459807 24.595666298857445 40-41 22.63697230000923 24.798767326232124 27.556017637258044 25.0082427365006 42-43 24.100222883594977 24.840310718195127 26.89989581181063 24.159570586399266 44-45 22.420023475313553 25.93648476962101 27.333573654895304 24.30991810017013 46-47 23.632475062974507 24.616547897992287 26.502705815635263 25.248271223397943 48-49 23.017896629490092 24.16088942423936 27.099040325665026 25.72217362060552 50-51 21.764561068786186 24.4727945734219 28.00398289027709 25.758661467514827 52-53 21.420784005134674 24.17100051434676 29.6729721769177 24.735243303600868 54-55 20.803787702276754 24.765356767616375 28.699010432007316 25.731845098099555 56-57 21.794894339108378 24.605997195271527 27.35687312340366 26.242235342216443 58-59 20.840495355492738 24.579400632162937 29.066966189393906 25.513137822950416 60-61 21.700377627234882 25.47445191297429 27.094864005838055 25.730306453952778 62-63 19.98676766033771 26.76383570797413 26.91945857310538 26.329938058582776 64-65 20.236687431035772 27.038373785020642 26.222672580921692 26.502266203021897 66-67 20.46836327827918 27.05727712739534 25.6909611250566 26.78339846926888 68-69 20.55782444509898 27.249607645742575 25.27640643065331 26.916161478505142 70-71 20.929297103392493 26.49655123904815 25.358833795659265 27.215317861900097 72-73 20.63981219749157 25.144302840337097 25.878455904656818 28.33742905751452 74-75 20.416269183595414 25.414444791249952 26.164204103344137 28.005081921810497 76 20.848628188839992 25.157711025044733 26.142882891595924 27.850777894519354 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 6.5 15 15.0 16 20.5 17 23.0 18 30.5 19 59.0 20 115.0 21 150.0 22 185.5 23 295.0 24 451.5 25 534.0 26 679.0 27 922.5 28 1216.5 29 1412.0 30 1621.0 31 2053.5 32 2856.0 33 3435.0 34 3719.5 35 4628.5 36 6064.0 37 6875.0 38 7973.5 39 10194.0 40 12020.0 41 12851.5 42 12979.0 43 13066.0 44 13282.0 45 13498.0 46 13585.0 47 13422.0 48 12549.5 49 11359.0 50 10878.0 51 10338.0 52 8788.0 53 7576.0 54 7374.0 55 6824.0 56 5839.5 57 5024.0 58 4643.0 59 4204.5 60 3495.5 61 3077.0 62 2929.0 63 2781.5 64 2555.5 65 2437.0 66 2361.5 67 2326.0 68 2229.5 69 2074.0 70 1967.0 71 1919.0 72 1871.0 73 1693.5 74 1499.5 75 1435.0 76 1329.0 77 1104.5 78 927.0 79 868.0 80 737.0 81 542.0 82 408.5 83 339.0 84 272.0 85 162.0 86 96.5 87 74.0 88 54.5 89 25.0 90 12.0 91 5.0 92 1.0 93 3.5 94 3.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 227473.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.29217093896858 #Duplication Level Percentage of deduplicated Percentage of total 1 61.92042892828855 26.80669793777723 2 19.690692337374845 17.049056371525413 3 7.697150632628608 9.996790827922435 4 3.073782976908548 5.322829522624663 5 1.5749710595259856 3.409195816646371 6 1.0398261540648672 2.7009798965151908 7 0.761591421434229 2.307966220166789 8 0.579824935518593 2.0081504178517893 9 0.4955421515465383 1.9307785978995309 >10 3.0727675216799692 23.80853991462723 >50 0.08428278397205467 2.255652319176342 >100 0.008123641828631775 0.6198537848447948 >500 0.0 0.0 >1k 0.001015455228578972 1.7835083724222216 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT 4057 1.7835083724222216 No Hit TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG 398 0.17496582011931086 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC 234 0.10286935152743404 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.3961261336510266E-4 0.0 2 0.0 0.0 0.0 4.3961261336510266E-4 0.0 3 0.0 0.0 0.0 4.3961261336510266E-4 0.0 4 0.0 0.0 0.0 0.0017584504534604107 0.0 5 0.0 0.0 0.0 0.002637675680190616 0.0 6 0.0 0.0 0.0 0.002637675680190616 0.0 7 0.0 0.0 0.0 0.002637675680190616 0.0 8 0.0 0.0 0.0 0.002637675680190616 0.0 9 0.0 0.0 0.0 0.002637675680190616 0.0 10 0.0 0.0 0.0 0.002637675680190616 0.0 11 0.0 0.0 0.0 0.002637675680190616 0.0 12 0.0 0.0 0.0 0.003077288293555719 0.0 13 0.0 0.0 0.0 0.0035169009069208213 0.0 14 0.0 0.0 0.0 0.0035169009069208213 0.0 15 0.0 0.0 0.0 0.0035169009069208213 0.0 16 0.0 0.0 0.0 0.0035169009069208213 0.0 17 0.0 0.0 0.0 0.0048357387470161295 0.0 18 0.0 0.0 0.0 0.0048357387470161295 0.0 19 0.0 0.0 0.0 0.005714963973746334 0.0 20 0.0 0.0 0.0 0.006154576587111438 0.0 21 0.0 0.0 0.0 0.00659418920047654 0.0 22 0.0 0.0 0.0 0.007473414427206745 0.0 23 0.0 0.0 0.0 0.007913027040571848 0.0 24 0.0 0.0 0.0 0.007913027040571848 0.0 25 0.0 0.0 0.0 0.007913027040571848 0.0 26 0.0 0.0 0.0 0.00835263965393695 0.0 27 0.0 0.0 0.0 0.01978256760142962 0.0 28 0.0 0.0 0.0 0.0325313333890176 0.0 29 0.0 0.0 0.0 0.05143467576371701 0.0 30 0.0 0.0 0.0 0.06242499109784458 0.0 31 0.0 0.0 0.0 0.08440562176609971 0.0 32 0.0 0.0 0.0 0.11034276595464076 0.0 33 0.0 0.0 0.0 0.14990790115750002 0.0 34 0.0 0.0 0.0 0.21057444180188417 0.0 35 0.0 0.0 0.0 0.30553076628874637 0.0 36 0.0 0.0 0.0 0.4734627845942156 0.0 37 0.0 0.0 0.0 0.7341530643197215 0.0 38 0.0 0.0 0.0 1.0352877044748168 0.0 39 0.0 0.0 0.0 1.408958425835154 0.0 40 0.0 0.0 0.0 1.8085662913840324 0.0 41 0.0 0.0 0.0 2.20377803079926 0.0 42 0.0 0.0 0.0 2.680757716300396 0.0 43 0.0 0.0 0.0 3.2597275281022364 0.0 44 0.0 0.0 0.0 3.914310709402874 0.0 45 0.0 0.0 0.0 4.696381548579392 0.0 46 0.0 0.0 0.0 5.52417209954588 0.0 47 0.0 0.0 0.0 6.430653308304722 0.0 48 0.0 0.0 0.0 7.276907589032544 0.0 49 0.0 0.0 0.0 8.083596734557508 0.0 50 0.0 0.0 0.0 8.79708800604907 0.0 51 0.0 0.0 0.0 9.482444070285265 0.0 52 0.0 0.0 0.0 10.182746963375873 0.0 53 0.0 0.0 0.0 10.840407432970066 0.0 54 0.0 0.0 0.0 11.53499536208693 0.0 55 0.0 0.0 0.0 12.31398891296989 0.0 56 0.0 0.0 0.0 13.125953409855235 0.0 57 0.0 0.0 0.0 13.969130402289503 0.0 58 0.0 0.0 0.0 14.738452475678432 0.0 59 0.0 0.0 0.0 15.468209413864503 0.0 60 0.0 0.0 0.0 16.190053325010002 0.0 61 0.0 0.0 0.0 16.904423821728294 0.0 62 0.0 0.0 0.0 17.53306985884039 0.0 63 0.0 0.0 0.0 18.152044418458456 0.0 64 0.0 0.0 0.0 18.849270023255507 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCTCGT 15 0.0022226044 70.0 25 CGTATGC 585 0.0 56.83761 41 TATGCCG 590 0.0 56.355934 43 TCGTATG 590 0.0 56.355934 40 CTCGTAT 580 0.0 56.12069 39 TTTACGA 25 2.386948E-4 55.999996 48 GTTTACG 25 2.386948E-4 55.999996 47 GTCCATA 25 2.386948E-4 55.999996 29 CCGTCTT 590 0.0 55.169495 47 TCTCGTA 505 0.0 54.752476 38 ATGCCGT 610 0.0 54.508198 44 TGCCGTC 610 0.0 54.508198 45 AAACTCG 45 2.6906491E-8 54.444447 36 AACTCGT 45 2.6906491E-8 54.444447 37 CGTCTTC 610 0.0 53.360657 48 GCCGTCT 610 0.0 53.360657 46 GTATGCC 625 0.0 53.2 42 ATCTCGT 520 0.0 53.173077 37 CTTGAAA 560 0.0 53.125004 57 AATCTCG 525 0.0 52.666668 36 >>END_MODULE