##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781166_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 129015 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.189505096306632 34.0 32.0 34.0 21.0 34.0 2 31.27182885710964 34.0 33.0 34.0 23.0 34.0 3 31.24188660233306 34.0 33.0 34.0 23.0 34.0 4 31.402108281982716 34.0 33.0 34.0 23.0 34.0 5 31.359586094640157 34.0 33.0 34.0 23.0 34.0 6 34.193233344959886 37.0 34.0 38.0 24.0 38.0 7 34.01752509398132 37.0 34.0 38.0 24.0 38.0 8 33.87169708948572 37.0 34.0 38.0 23.0 38.0 9 34.17377049180328 37.0 34.0 38.0 24.0 38.0 10-11 34.04031314188273 37.0 34.0 38.0 23.0 38.0 12-13 34.02689997287137 37.0 34.0 38.0 23.0 38.0 14-15 33.89670580940201 37.0 34.0 38.0 23.0 38.0 16-17 33.86266713172887 37.0 34.0 38.0 22.5 38.0 18-19 33.91888927644072 37.0 34.0 38.0 23.0 38.0 20-21 33.869538425764446 37.0 34.0 38.0 23.0 38.0 22-23 33.9156919738015 37.0 34.0 38.0 23.0 38.0 24-25 33.92337325117235 37.0 34.0 38.0 23.0 38.0 26-27 33.827671201023136 37.0 34.0 38.0 23.0 38.0 28-29 33.9267953338759 37.0 34.0 38.0 23.0 38.0 30-31 33.99456652327248 37.0 34.0 38.0 23.0 38.0 32-33 33.94197573925513 37.0 34.0 38.0 23.0 38.0 34-35 33.94676200441809 37.0 34.0 38.0 23.0 38.0 36-37 33.810963841413795 37.0 34.0 38.0 22.5 38.0 38-39 33.8310932837267 37.0 34.0 38.0 23.0 38.0 40-41 33.82198969112119 37.0 34.0 38.0 23.0 38.0 42-43 33.917548347091426 37.0 34.0 38.0 23.0 38.0 44-45 33.91015773359687 37.0 34.0 38.0 23.0 38.0 46-47 33.919676006665895 37.0 34.0 38.0 23.0 38.0 48-49 33.878684649071815 37.0 34.0 38.0 23.0 38.0 50-51 33.75085067627795 37.0 34.0 38.0 22.5 38.0 52-53 33.83227919234197 37.0 34.0 38.0 23.0 38.0 54-55 33.805468356392666 37.0 34.0 38.0 23.0 38.0 56-57 33.75473782118358 37.0 34.0 38.0 23.0 38.0 58-59 33.76826725574546 37.0 34.0 38.0 23.0 38.0 60-61 33.749920551873814 37.0 34.0 38.0 23.0 38.0 62-63 33.73687555710576 37.0 34.0 38.0 22.5 38.0 64-65 33.7100453435647 37.0 34.0 38.0 22.5 38.0 66-67 33.64043715846995 37.0 34.0 38.0 22.0 38.0 68-69 33.40085648955548 37.0 34.0 38.0 21.5 38.0 70-71 33.5368096732938 37.0 34.0 38.0 22.0 38.0 72-73 33.52729527574313 37.0 34.0 38.0 22.0 38.0 74-75 33.52662481106848 37.0 34.0 38.0 22.0 38.0 76 32.10653799945743 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 32.0 14 77.0 15 269.0 16 624.0 17 1069.0 18 1402.0 19 1429.0 20 1245.0 21 1214.0 22 1130.0 23 1211.0 24 1428.0 25 1606.0 26 2039.0 27 2454.0 28 2810.0 29 3411.0 30 4143.0 31 4941.0 32 6071.0 33 7479.0 34 9528.0 35 12627.0 36 19122.0 37 41647.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.38166104716506 19.238848195946208 10.374762624501027 26.004728132387704 2 22.13463550749913 20.066658915629965 32.4923458512576 25.306359725613305 3 19.73491454482037 21.966438011083984 28.61837770801845 29.680269736077204 4 14.359570592566756 15.916753865829556 36.47405340464287 33.24962213696082 5 14.241754834709141 33.6782544665349 35.45479207844049 16.62519862031547 6 31.025074603728246 36.300430182536914 17.567724683176376 15.10677053055846 7 30.08099833352711 27.794442506685268 22.09665542766345 20.027903732124173 8 26.165174592101692 33.84102623725923 19.277603379452003 20.716195791187072 9 24.286323295740804 16.015967135604388 21.695151726543425 38.002557842111386 10-11 25.98651319613998 24.074332441964113 26.986396930589468 22.952757431306438 12-13 25.435802038522652 22.60434833158935 26.4535131573848 25.5063364725032 14-15 23.577490989419836 23.917373948765647 23.73289927527807 28.77223578653645 16-17 23.848389722125336 26.48335464868426 25.31798628066504 24.350269348525366 18-19 23.45424950587141 26.022943068635428 26.40894469635314 24.113862729140024 20-21 23.177149943804984 26.33182188117661 26.245785373793744 24.245242801224663 22-23 23.72166027206139 25.75010657675464 26.841064992442735 23.68716815874123 24-25 23.134131690113552 26.15432314072007 26.223694919195445 24.487850249970933 26-27 22.517149168701316 26.198891601751733 26.881370383288765 24.402588846258187 28-29 23.35658644343681 25.990388714490564 27.393713909235363 23.25931093283727 30-31 23.715459442700464 26.06441111498663 26.352362128434674 23.867767313878232 32-33 22.78300972755106 26.42328411425028 26.54885090880905 24.244855249389605 34-35 23.727861101422317 25.633065922567145 26.97128240902221 23.667790566988334 36-37 23.639886834864164 25.536177963802658 26.382203619734142 24.44173158159904 38-39 22.900050381738556 25.713289152424135 27.475487346432587 23.911173119404722 40-41 23.34340968104484 24.943998759834127 27.840561175057164 23.87203038406387 42-43 22.730690229818237 25.06258962136186 27.811494787427822 24.395225361392086 44-45 22.279967445645855 24.72696973220168 28.278494748672635 24.71456807347983 46-47 22.406309343874746 24.45064527380537 28.526527923109718 24.61651745921017 48-49 21.378909429136147 24.478549005929544 29.22334612254389 24.91919544239042 50-51 21.340541797465413 24.707592140448785 28.835406735650892 25.11645932643491 52-53 20.978955935356353 24.675425338138975 29.295043212029608 25.05057551447506 54-55 20.188737743673215 25.16916637600279 29.164825795450138 25.477270084873854 56-57 20.326318645118786 25.26644188660233 29.071038251366122 25.336201216912762 58-59 20.563967616043158 25.03749578535746 28.769246867600152 25.629289730999226 60-61 20.301206453538168 24.727453115735052 28.834743381557885 26.13659704916889 62-63 19.929853117854513 24.546370577064682 29.216757741347905 26.307018563732896 64-65 21.15684222764795 24.34019300081386 28.237414254156494 26.265550517381698 66-67 21.13173325478919 24.376717345724703 27.609687283212352 26.88186211627375 68-69 21.027012362903537 24.49443863116692 27.041816843002753 27.43673216292679 70-71 21.740495291245203 24.11851335116072 27.471611828082004 26.66937952951207 72-73 21.99550439871333 23.525171491687015 27.238693175212187 27.24063093438747 74-75 22.205557493314732 23.86815486571329 27.43014378173081 26.496143859241172 76 22.88261054916095 23.60500716970895 26.93872805487734 26.573654226252764 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 1.5 12 1.0 13 4.0 14 5.0 15 9.5 16 19.5 17 23.0 18 48.0 19 81.5 20 96.5 21 103.0 22 141.5 23 221.0 24 301.0 25 340.0 26 466.5 27 675.0 28 850.0 29 943.0 30 1126.0 31 1410.5 32 1873.0 33 2234.0 34 2387.0 35 2886.0 36 3763.0 37 4294.0 38 4664.0 39 5443.0 40 6480.0 41 7272.5 42 7437.0 43 7542.0 44 7735.5 45 7916.0 46 8008.0 47 7898.5 48 7369.5 49 6555.0 50 6160.0 51 5725.5 52 4863.5 53 4126.0 54 3816.0 55 3509.5 56 2915.0 57 2357.0 58 2087.0 59 1929.0 60 1697.0 61 1548.0 62 1473.0 63 1367.5 64 1240.0 65 1227.0 66 1177.5 67 1119.0 68 1132.5 69 1149.5 70 1127.5 71 1102.0 72 1077.5 73 1003.5 74 933.5 75 913.0 76 846.5 77 734.5 78 591.0 79 493.0 80 451.0 81 338.5 82 234.0 83 200.0 84 178.5 85 126.0 86 73.5 87 52.0 88 42.0 89 24.0 90 12.0 91 7.0 92 6.0 93 4.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 3.87551835057939E-4 60-61 3.87551835057939E-4 62-63 0.0 64-65 0.0 66-67 3.87551835057939E-4 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 129015.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.176956167887454 #Duplication Level Percentage of deduplicated Percentage of total 1 73.73729299066044 42.89811262256327 2 13.86146528638235 16.128357167771192 3 5.212038850473641 9.096616672479945 4 2.286262440545186 5.320311591675386 5 1.1537897864289806 3.356198891601752 6 0.8060540655768283 2.813626322520637 7 0.5875534593708782 2.3927450296477155 8 0.41301943856002765 1.9222571018873775 9 0.3703851739344765 1.9393093826299268 >10 1.5641445834499113 13.854202999651202 >50 0.007993924617290859 0.2782622175716002 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 7.75103670115878E-4 0.0 3 0.0 0.0 0.0 7.75103670115878E-4 0.0 4 0.0 0.0 0.0 0.002325311010347634 0.0 5 0.0 0.0 0.0 0.002325311010347634 0.0 6 0.0 0.0 0.0 0.002325311010347634 0.0 7 0.0 0.0 0.0 0.002325311010347634 0.0 8 0.0 0.0 0.0 0.002325311010347634 0.0 9 0.0 0.0 0.0 0.002325311010347634 0.0 10 0.0 0.0 0.0 0.002325311010347634 0.0 11 0.0 0.0 0.0 0.002325311010347634 0.0 12 0.0 0.0 0.0 0.002325311010347634 0.0 13 0.0 0.0 0.0 0.002325311010347634 0.0 14 0.0 0.0 0.0 0.002325311010347634 0.0 15 0.0 0.0 0.0 0.002325311010347634 0.0 16 0.0 0.0 0.0 0.002325311010347634 0.0 17 0.0 0.0 0.0 0.002325311010347634 0.0 18 0.0 0.0 0.0 0.002325311010347634 0.0 19 0.0 0.0 0.0 0.002325311010347634 0.0 20 0.0 0.0 0.0 0.003100414680463512 0.0 21 0.0 0.0 0.0 0.004650622020695268 0.0 22 0.0 0.0 0.0 0.006200829360927024 0.0 23 0.0 0.0 0.0 0.006975933031042902 0.0 24 0.0 0.0 0.0 0.010851451381622293 0.0 25 0.0 0.0 0.0 0.01162655505173817 0.0 26 0.0 0.0 0.0 0.012401658721854048 0.0 27 0.0 0.0 0.0 0.03100414680463512 0.0 28 0.0 0.0 0.0 0.0457311165368368 0.0 29 0.0 0.0 0.0 0.07130953765066078 0.0 30 0.0 0.0 0.0 0.09688795876448475 0.0 31 0.0 0.0 0.0 0.11471534317714994 0.0 32 0.0 0.0 0.0 0.13874355695074217 0.0 33 0.0 0.0 0.0 0.18137425880711544 0.0 34 0.0 0.0 0.0 0.26973607720032555 0.0 35 0.0 0.0 0.0 0.3976281827694454 0.0 36 0.0 0.0 0.0 0.5813277525869085 0.0 37 0.0 0.0 0.0 0.8843932876022168 0.0 38 0.0 0.0 0.0 1.2944231290935162 0.0 39 0.0 0.0 0.0 1.7687865752044336 0.0 40 0.0 0.0 0.0 2.318335077316591 0.0 41 0.0 0.0 0.0 2.936092702398946 0.0 42 0.0 0.0 0.0 3.6747665000193774 0.0 43 0.0 0.0 0.0 4.5064527380537145 0.0 44 0.0 0.0 0.0 5.366817811882339 0.0 45 0.0 0.0 0.0 6.379878308723792 0.0 46 0.0 0.0 0.0 7.4301437817308065 0.0 47 0.0 0.0 0.0 8.616052397008099 0.0 48 0.0 0.0 0.0 9.743053133356586 0.0 49 0.0 0.0 0.0 10.726659690733635 0.0 50 0.0 0.0 0.0 11.646707747161182 0.0 51 0.0 0.0 0.0 12.596984846723249 0.0 52 0.0 0.0 0.0 13.476727512304771 0.0 53 0.0 0.0 0.0 14.347944037515017 0.0 54 0.0 0.0 0.0 15.281168856334535 0.0 55 0.0 0.0 0.0 16.326008603650738 0.0 56 0.0 0.0 0.0 17.27163508119211 0.0 57 0.0 0.0 0.0 18.27926985234275 0.0 58 0.0 0.0 0.0 19.171414176646127 0.0 59 0.0 0.0 0.0 20.046506220206954 0.0 60 0.0 0.0 0.0 20.84641320776654 0.0 61 0.0 0.0 0.0 21.723055458667595 0.0 62 0.0 0.0 0.0 22.507460372824866 0.0 63 0.0 0.0 0.0 23.239158237414255 0.0 64 0.0 0.0 0.0 24.01116149284967 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCGCA 20 0.006938126 52.499996 21 TACTCGC 20 0.006938126 52.499996 20 ATAGTGC 20 0.006938126 52.499996 6 GCATCAG 30 5.8599067E-4 46.666668 25 TTACTCG 40 4.5720495E-5 43.749996 19 AGTTAAT 35 0.0012516296 40.000004 70 TAGAGGT 50 1.7020958E-4 35.0 4 GGCGCCA 40 0.0024115075 34.999996 39 TGGTACG 80 6.1780156E-8 34.999996 70 TACTGAC 55 2.97885E-4 31.81818 34 TCGGGCC 45 0.0042944336 31.111109 48 TCTACTG 60 4.9600925E-4 29.166668 32 TATAGTG 60 4.9600925E-4 29.166668 5 GACTATC 60 4.9600925E-4 29.166668 38 CCGGACG 50 0.0071870354 27.999998 28 GAGAGGT 50 0.0071870354 27.999998 6 TTTCAAC 50 0.0071870354 27.999998 42 TATAGAG 50 0.0071870354 27.999998 2 ATAGTAC 50 0.0071870354 27.999998 3 GGACAGA 50 0.0071870354 27.999998 6 >>END_MODULE