SRR1781166_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781166_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	116604
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCGT	3685	3.1602689444615963	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCG	334	0.28643957325649205	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCC	236	0.2023944290075812	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTACCTCGTATGCCGT	214	0.18352715172721348	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTAACTCGTATGCCGT	149	0.12778292339885425	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCAACGC	15	0.0022198802	70.0	8
CCATTCG	15	0.0022198802	70.0	67
CTTGAAA	490	0.0	55.0	57
TCGTATG	525	0.0	54.666668	40
CGTATGC	530	0.0	54.150944	41
CTCGTAT	530	0.0	54.150944	39
GCCTTAT	485	0.0	54.12371	32
TATGCCG	525	0.0	54.0	43
ATCTCGT	490	0.0	53.57143	37
CCGTCTT	500	0.0	53.199997	47
TGCCTTA	540	0.0	53.148148	31
CGTCTTC	495	0.0	53.030304	48
TCTCGTA	495	0.0	53.030304	38
GCCGTCT	515	0.0	53.009712	46
TGCCGTC	525	0.0	52.666668	45
GACAGTG	20	0.0069364584	52.500004	68
ATCAACG	20	0.0069364584	52.500004	7
TACGAGT	20	0.0069364584	52.500004	44
GCGTGCG	20	0.0069364584	52.500004	23
CGTCCGT	20	0.0069364584	52.500004	6