##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781166_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 116604 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.25166375081472 34.0 34.0 34.0 32.0 34.0 2 33.27863538129052 34.0 34.0 34.0 33.0 34.0 3 33.34940482316215 34.0 34.0 34.0 33.0 34.0 4 33.40713011560495 34.0 34.0 34.0 34.0 34.0 5 33.398451168055985 34.0 34.0 34.0 34.0 34.0 6 36.81400295015608 38.0 37.0 38.0 34.0 38.0 7 36.70330348873109 38.0 37.0 38.0 34.0 38.0 8 36.506620699118386 38.0 37.0 38.0 34.0 38.0 9 36.45147679324894 38.0 37.0 38.0 34.0 38.0 10-11 36.373293369009644 38.0 37.0 38.0 34.0 38.0 12-13 36.315812493567975 38.0 37.0 38.0 34.0 38.0 14-15 36.32406263936057 38.0 37.0 38.0 34.0 38.0 16-17 36.2297777091695 38.0 37.0 38.0 34.0 38.0 18-19 36.2216690679565 38.0 37.0 38.0 34.0 38.0 20-21 36.17451802682584 38.0 37.0 38.0 33.0 38.0 22-23 36.2461236321224 38.0 37.0 38.0 34.0 38.0 24-25 36.228529896058454 38.0 37.0 38.0 34.0 38.0 26-27 35.99316061198587 38.0 36.5 38.0 32.0 38.0 28-29 35.984117182943976 38.0 37.0 38.0 32.0 38.0 30-31 36.04050032588934 38.0 37.0 38.0 32.0 38.0 32-33 35.97920311481596 38.0 37.0 38.0 32.0 38.0 34-35 35.94759184933621 38.0 37.0 38.0 32.0 38.0 36-37 35.88261980721073 38.0 36.5 38.0 31.5 38.0 38-39 35.64613992658914 38.0 36.0 38.0 31.0 38.0 40-41 35.83855613872595 38.0 36.0 38.0 31.5 38.0 42-43 35.88956210764639 38.0 36.5 38.0 31.5 38.0 44-45 35.83440962574183 38.0 36.0 38.0 31.0 38.0 46-47 35.8589027820658 38.0 36.0 38.0 31.5 38.0 48-49 35.83077767486536 38.0 36.0 38.0 31.0 38.0 50-51 35.705511817776404 38.0 36.0 38.0 31.0 38.0 52-53 35.755167061164286 38.0 36.0 38.0 31.0 38.0 54-55 35.77795787451545 38.0 36.0 38.0 31.0 38.0 56-57 35.72741929950945 38.0 36.0 38.0 31.0 38.0 58-59 35.68912730266543 38.0 36.0 38.0 31.0 38.0 60-61 35.67778120819183 38.0 36.0 38.0 31.0 38.0 62-63 35.66198843950465 38.0 36.0 38.0 31.0 38.0 64-65 35.59018129738259 38.0 36.0 38.0 31.0 38.0 66-67 35.52962162533018 38.0 36.0 38.0 31.0 38.0 68-69 35.38958354773421 38.0 36.0 38.0 31.0 38.0 70-71 35.086262049329356 38.0 36.0 38.0 28.0 38.0 72-73 34.87553600219547 38.0 36.0 38.0 27.0 38.0 74-75 34.874125244417 38.0 36.0 38.0 27.0 38.0 76 33.93652018798669 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 2.0 22 13.0 23 60.0 24 101.0 25 166.0 26 373.0 27 703.0 28 1126.0 29 1890.0 30 2637.0 31 3868.0 32 5436.0 33 7327.0 34 9870.0 35 13624.0 36 19615.0 37 49788.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.85280093307262 18.897293403313782 10.266371651058282 29.983534012555314 2 21.334602586532196 19.21803711708003 34.774964838255976 24.672395458131795 3 19.26263249974272 21.51555692772118 30.552982745017328 28.668827827518783 4 13.792837295461563 18.97705052999897 34.974786456725326 32.255325717814145 5 13.660766354498987 33.927652567664914 37.23628691983122 15.17529415800487 6 30.314568968474493 38.89060409591438 16.4762786868375 14.318548248773627 7 28.637954101059997 27.887551027409007 20.76515385407019 22.709341017460808 8 25.03430414050976 36.675414222496656 18.414462625638915 19.87581901135467 9 23.890261054509278 15.389695036190867 19.669994168296114 41.05004974100374 10-11 24.921958080340296 25.835734623169017 27.07711570786594 22.165191588624747 12-13 24.417258413090458 21.97008678947549 27.289801379026446 26.3228534184076 14-15 22.210644574800178 23.069963294569654 22.518095434118898 32.201296696511264 16-17 24.921958080340296 27.677866968543103 23.639840828788035 23.760334122328565 18-19 24.719992453089088 25.511989297108162 24.877791499433982 24.890226750368768 20-21 22.44477033377929 25.608898494048233 24.395818325271858 27.55051284690062 22-23 22.734640321086754 27.203612225995677 24.878220301190353 25.183527151727215 24-25 24.67325306164454 27.291087784295563 24.66510582827347 23.37055332578642 26-27 23.940859661761174 27.61011629103633 25.231981750197246 23.21704229700525 28-29 22.474357654968955 25.246989811670268 27.92056876264965 24.358083770711126 30-31 24.72513807416555 24.956691022606428 27.601111454152516 22.717059449075503 32-33 23.874395389523514 25.532142979657646 25.52013653047923 25.07332510033961 34-35 22.85127439881994 24.804895200850744 27.271362903502457 25.072467496826867 36-37 22.3144145998422 26.828410689170184 27.433021165654694 23.42415354533292 38-39 21.765119549929675 25.87089636719152 27.50720386950705 24.856780213371753 40-41 21.990669273781347 24.480292271277143 28.40254193681177 25.126496518129738 42-43 24.055778532468867 24.220009605159344 27.996895475283868 23.72731638708792 44-45 21.494116839902578 26.32757023772769 28.26618297828548 23.912129944084253 46-47 23.604679084765532 23.60682309354739 26.997358581180748 25.79113924050633 48-49 22.70762581043532 23.640269630544406 27.311241466845047 26.340863092175226 50-51 20.607783609481665 23.764193338135915 29.47025831017804 26.15776474220438 52-53 19.97315701005111 23.738036430997223 32.0507872800247 24.238019278926966 54-55 19.1725841309046 23.876110596549 30.254107920826044 26.69719735172035 56-57 21.091043188912902 24.27360982470584 27.90513189942026 26.730215086960996 58-59 19.35568248087544 24.17455661898391 30.914462625638915 25.55529827450173 60-61 21.0022812253439 25.91849336214881 27.36912970395527 25.71009570855202 62-63 18.52938149634661 28.26661178004185 26.986209735515075 26.217796988096463 64-65 18.825254708243286 28.721141641796166 25.83787863195088 26.615725018009673 66-67 18.924736715721586 28.51317278995575 25.02615690713869 27.535933587183976 68-69 19.257486878666256 28.667541422249666 24.62351205790539 27.451459641178687 70-71 19.77505059860725 27.626839559534837 24.78688552708312 27.81122431477479 72-73 20.000171520702548 25.514990909402762 25.3567630613015 29.128074508593187 74-75 20.31362560461048 25.24784741518301 25.600322458920793 28.83820452128572 76 21.45809749236733 24.831052107989436 25.09004836883812 28.62080203080512 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.5 12 1.0 13 3.5 14 4.5 15 5.5 16 18.0 17 28.0 18 32.0 19 57.5 20 80.0 21 81.0 22 116.0 23 197.5 24 302.5 25 361.0 26 442.0 27 599.5 28 789.0 29 902.0 30 1031.0 31 1224.0 32 1567.5 33 1847.0 34 2023.5 35 2511.0 36 3236.0 37 3650.0 38 3924.5 39 4562.0 40 5574.0 41 6787.5 42 7352.0 43 7660.0 44 7951.0 45 7732.5 46 7531.0 47 7219.5 48 6513.0 49 5743.5 50 5369.0 51 5022.0 52 4269.5 53 3566.5 54 3269.0 55 3051.0 56 2575.0 57 2052.5 58 1788.0 59 1681.5 60 1438.5 61 1226.0 62 1150.0 63 1123.0 64 1154.5 65 1150.5 66 1121.5 67 1155.0 68 1086.5 69 1005.5 70 978.0 71 963.0 72 972.0 73 971.0 74 884.5 75 808.0 76 774.0 77 684.5 78 561.5 79 494.0 80 425.0 81 306.5 82 226.5 83 196.0 84 170.0 85 109.5 86 48.5 87 22.0 88 22.5 89 18.0 90 11.0 91 5.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 116604.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.074645809749235 #Duplication Level Percentage of deduplicated Percentage of total 1 64.23466088810443 31.522932317930774 2 19.221292137776768 18.86556207334225 3 6.981458504447513 10.278378100236699 4 3.0931618405186727 6.0718328702274365 5 1.576289254320815 3.8677918424753868 6 1.069500026213236 3.1491200987959247 7 0.7619313912238086 2.617405920894652 8 0.5871764849798158 2.30523824225584 9 0.4316446184226623 1.9064526088298857 >10 2.0219142652429967 15.066378511886386 >50 0.010485294374639569 0.29844602243490786 >100 0.00873774531219964 0.8901924462282598 >500 0.0 0.0 >1k 0.001747549062439928 3.1602689444615963 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCGT 3685 3.1602689444615963 No Hit TCTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCG 334 0.28643957325649205 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCC 236 0.2023944290075812 No Hit CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTACCTCGTATGCCGT 214 0.18352715172721348 No Hit CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTAACTCGTATGCCGT 149 0.12778292339885425 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 8.576035127439882E-4 0.0 3 0.0 0.0 0.0 8.576035127439882E-4 0.0 4 0.0 0.0 0.0 0.0017152070254879764 0.0 5 0.0 0.0 0.0 0.0017152070254879764 0.0 6 0.0 0.0 0.0 0.0017152070254879764 0.0 7 0.0 0.0 0.0 0.0017152070254879764 0.0 8 0.0 0.0 0.0 0.0017152070254879764 0.0 9 0.0 0.0 0.0 0.0017152070254879764 0.0 10 0.0 0.0 0.0 0.0017152070254879764 0.0 11 0.0 0.0 0.0 0.0017152070254879764 0.0 12 0.0 0.0 0.0 0.0017152070254879764 0.0 13 0.0 0.0 0.0 0.0017152070254879764 0.0 14 0.0 0.0 0.0 0.0017152070254879764 0.0 15 0.0 0.0 0.0 0.0025728105382319647 0.0 16 0.0 0.0 0.0 0.0025728105382319647 0.0 17 0.0 0.0 0.0 0.0025728105382319647 0.0 18 0.0 0.0 0.0 0.0034304140509759527 0.0 19 0.0 0.0 0.0 0.0034304140509759527 0.0 20 0.0 0.0 0.0 0.004288017563719941 0.0 21 0.0 0.0 0.0 0.005145621076463929 0.0 22 0.0 0.0 0.0 0.005145621076463929 0.0 23 0.0 0.0 0.0 0.006003224589207917 0.0 24 0.0 0.0 0.0 0.007718431614695894 0.0 25 0.0 0.0 0.0 0.008576035127439883 0.0 26 0.0 0.0 0.0 0.00943363864018387 0.0 27 0.0 0.0 0.0 0.029158519433295598 0.0 28 0.0 0.0 0.0 0.04631058968817536 0.0 29 0.0 0.0 0.0 0.07118109155775101 0.0 30 0.0 0.0 0.0 0.09690919694007066 0.0 31 0.0 0.0 0.0 0.11749168124592638 0.0 32 0.0 0.0 0.0 0.1397893725772701 0.0 33 0.0 0.0 0.0 0.18266954821446948 0.0 34 0.0 0.0 0.0 0.27443312407807624 0.0 35 0.0 0.0 0.0 0.41765291070632227 0.0 36 0.0 0.0 0.0 0.6200473397139035 0.0 37 0.0 0.0 0.0 0.945079071043875 0.0 38 0.0 0.0 0.0 1.385029673081541 0.0 39 0.0 0.0 0.0 1.893588556138726 0.0 40 0.0 0.0 0.0 2.47075572021543 0.0 41 0.0 0.0 0.0 3.134540839079277 0.0 42 0.0 0.0 0.0 3.904668793523378 0.0 43 0.0 0.0 0.0 4.776851565984014 0.0 44 0.0 0.0 0.0 5.6901993070563615 0.0 45 0.0 0.0 0.0 6.781070975266715 0.0 46 0.0 0.0 0.0 7.881376282117252 0.0 47 0.0 0.0 0.0 9.130904600185243 0.0 48 0.0 0.0 0.0 10.31525505128469 0.0 49 0.0 0.0 0.0 11.341806456039244 0.0 50 0.0 0.0 0.0 12.27230626736647 0.0 51 0.0 0.0 0.0 13.249974271894617 0.0 52 0.0 0.0 0.0 14.168467634043429 0.0 53 0.0 0.0 0.0 15.039792802991322 0.0 54 0.0 0.0 0.0 16.021748825083186 0.0 55 0.0 0.0 0.0 17.11690851085726 0.0 56 0.0 0.0 0.0 18.092861308359918 0.0 57 0.0 0.0 0.0 19.154574457136977 0.0 58 0.0 0.0 0.0 20.079071043874997 0.0 59 0.0 0.0 0.0 21.010428458714966 0.0 60 0.0 0.0 0.0 21.83287022743645 0.0 61 0.0 0.0 0.0 22.732496312304896 0.0 62 0.0 0.0 0.0 23.554080477513637 0.0 63 0.0 0.0 0.0 24.30362594765188 0.0 64 0.0 0.0 0.0 25.106342835580254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCAACGC 15 0.0022198802 70.0 8 CCATTCG 15 0.0022198802 70.0 67 CTTGAAA 490 0.0 55.0 57 TCGTATG 525 0.0 54.666668 40 CGTATGC 530 0.0 54.150944 41 CTCGTAT 530 0.0 54.150944 39 GCCTTAT 485 0.0 54.12371 32 TATGCCG 525 0.0 54.0 43 ATCTCGT 490 0.0 53.57143 37 CCGTCTT 500 0.0 53.199997 47 TGCCTTA 540 0.0 53.148148 31 CGTCTTC 495 0.0 53.030304 48 TCTCGTA 495 0.0 53.030304 38 GCCGTCT 515 0.0 53.009712 46 TGCCGTC 525 0.0 52.666668 45 GACAGTG 20 0.0069364584 52.500004 68 ATCAACG 20 0.0069364584 52.500004 7 TACGAGT 20 0.0069364584 52.500004 44 GCGTGCG 20 0.0069364584 52.500004 23 CGTCCGT 20 0.0069364584 52.500004 6 >>END_MODULE