##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781165_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 85105 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.692344750602196 34.0 32.0 34.0 21.0 34.0 2 30.878256271664416 34.0 32.0 34.0 21.0 34.0 3 30.762881146818636 34.0 32.0 34.0 21.0 34.0 4 30.957957816814524 34.0 32.0 34.0 21.0 34.0 5 30.973515069619882 34.0 32.0 34.0 21.0 34.0 6 33.60257329181599 37.0 34.0 38.0 21.0 38.0 7 33.56375066094824 37.0 34.0 38.0 21.0 38.0 8 33.38370248516539 37.0 34.0 38.0 21.0 38.0 9 33.679466541331294 37.0 34.0 38.0 21.0 38.0 10-11 33.52013982727219 37.0 34.0 38.0 21.0 38.0 12-13 33.46329827859702 37.0 34.0 38.0 21.0 38.0 14-15 33.308977145878615 37.0 34.0 38.0 21.0 38.0 16-17 33.259790846601256 37.0 34.0 38.0 21.0 38.0 18-19 33.29027671699665 37.0 34.0 38.0 21.0 38.0 20-21 33.23809999412491 37.0 34.0 38.0 21.0 38.0 22-23 33.2985958521826 37.0 34.0 38.0 21.0 38.0 24-25 33.27253392867634 37.0 34.0 38.0 21.0 38.0 26-27 33.18359085835145 37.0 34.0 38.0 21.0 38.0 28-29 33.2489219199812 37.0 34.0 38.0 21.0 38.0 30-31 33.33909288525938 37.0 34.0 38.0 21.0 38.0 32-33 33.2965571940544 37.0 34.0 38.0 21.0 38.0 34-35 33.298454849891314 37.0 34.0 38.0 21.0 38.0 36-37 33.14269431878268 37.0 34.0 38.0 21.0 38.0 38-39 33.174848716291635 37.0 34.0 38.0 21.0 38.0 40-41 33.153569120498204 37.0 34.0 38.0 21.0 38.0 42-43 33.20613359967099 37.0 34.0 38.0 21.0 38.0 44-45 33.28045355737031 37.0 34.0 38.0 21.0 38.0 46-47 33.23284765877446 37.0 34.0 38.0 21.0 38.0 48-49 33.202232536278714 37.0 34.0 38.0 21.0 38.0 50-51 33.05528464837553 37.0 33.5 38.0 21.0 38.0 52-53 33.13767111215557 37.0 34.0 38.0 21.0 38.0 54-55 33.11834204805828 37.0 34.0 38.0 21.0 38.0 56-57 33.07322718994183 37.0 33.5 38.0 21.0 38.0 58-59 33.09138123494507 37.0 34.0 38.0 21.0 38.0 60-61 33.05265260560484 37.0 33.5 38.0 21.0 38.0 62-63 33.00736736971976 37.0 33.0 38.0 21.0 38.0 64-65 33.01428823218377 37.0 33.0 38.0 21.0 38.0 66-67 32.886575406850355 37.0 32.0 38.0 21.0 38.0 68-69 32.66115386875037 37.0 31.5 38.0 15.0 38.0 70-71 32.811526937312735 37.0 32.0 38.0 19.5 38.0 72-73 32.786493155513774 37.0 32.0 38.0 19.5 38.0 74-75 32.78919569943011 37.0 31.5 38.0 19.5 38.0 76 31.31562187885553 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 27.0 14 89.0 15 266.0 16 598.0 17 1079.0 18 1425.0 19 1397.0 20 1209.0 21 994.0 22 994.0 23 1029.0 24 1090.0 25 1256.0 26 1417.0 27 1655.0 28 1942.0 29 2290.0 30 2860.0 31 3373.0 32 3978.0 33 4942.0 34 6120.0 35 7979.0 36 11979.0 37 25113.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.18418424299394 17.63468656365666 10.269666882086833 26.911462311262557 2 23.69896010810176 19.481816579519418 30.9805534339933 25.838669878385524 3 21.06926737559485 20.689736208213382 27.732800658010692 30.508195758181074 4 15.885083132600904 15.237647611773692 33.46571881793079 35.41155043769461 5 15.78050643322954 32.08389636331591 33.84289994712414 18.292697256330413 6 32.278949532929914 33.45396862699019 17.20815463251278 17.058927207567123 7 30.517595910933554 26.44380471182657 21.26549556430292 21.773103812936963 8 26.94906292227249 32.06744609599906 18.896657070677396 22.086833911051055 9 25.140708536513717 14.878091768991247 20.895364549673932 39.085835144821104 10-11 27.573585570765523 22.7037189354327 25.185946771635038 24.536748722166735 12-13 26.415604253569118 20.98231596263439 24.687738675753483 27.914341108043004 14-15 24.94976793372892 22.182597967216967 22.267199341989308 30.600434757064804 16-17 25.711767816227017 24.190118089418952 23.41636801598026 26.681746078373774 18-19 24.98090593972152 23.703660184477997 24.439809646906763 26.87562422889372 20-21 25.136595969684507 24.18306797485459 24.232418776805122 26.44791727865578 22-23 25.831032254274135 23.66899712120322 24.24534398683979 26.25462663768286 24-25 25.22060983490982 23.443980964690674 24.370483520357205 26.964925680042303 26-27 24.59373714822866 24.09670407144116 24.832266024322898 26.477292756007287 28-29 25.36572469302626 23.788261559250337 25.062569766758706 25.783443980964694 30-31 25.532577404382824 23.295928558839083 24.542036308090008 26.629457728688088 32-33 24.839903648434287 23.912813583220725 24.65013806474355 26.597144703601433 34-35 25.885083132600904 23.25656541918806 24.839903648434287 26.018447799776744 36-37 25.925621291345983 22.809470653898124 24.497973092062747 26.766934962693146 38-39 24.802890546971387 23.357029551730214 25.561952881734328 26.278127019564067 40-41 25.352211973444565 22.664943305328713 26.007285118383173 25.975559602843546 42-43 24.411021679102284 22.757769813759474 25.670054638387874 27.161153868750365 44-45 23.489219199812 23.21073967451971 26.608894894542033 26.691146231126258 46-47 24.08730391868868 22.764819928323835 26.58656953175489 26.561306621232596 48-49 23.46219376064861 22.87938428999471 26.852123847012514 26.80629810234416 50-51 23.242465190059338 23.260090476470243 26.316315140121027 27.181129193349392 52-53 22.918159920098702 23.221902355913286 27.070677398507726 26.789260325480292 54-55 22.429939486516655 23.4580811938194 26.791022854121376 27.32095646554257 56-57 22.540978790905353 23.721872980435933 26.734034428059456 27.00311380059926 58-59 22.83179601668527 23.316491392985135 26.6218201045767 27.22989248575289 60-61 22.415839257387933 23.153163738910756 26.64532048645791 27.785676517243406 62-63 22.318312672580927 22.98924857528935 26.772222548616416 27.92021620351331 64-65 22.89994712414077 23.092650255566653 26.21115093120263 27.796251689089946 66-67 22.87233417543035 23.156101286645907 25.593678397273955 28.37788614064978 68-69 22.63145526114799 23.42988073556195 25.683567357969565 28.25509664532049 70-71 23.217789789084073 22.636155337524237 26.5049057047177 27.64114916867399 72-73 23.970389518829684 22.290112214323482 25.811056929675107 27.928441337171726 74-75 23.659009458903707 22.904647200517008 26.008460137477236 27.42788320310205 76 24.00681511074555 22.69666882086834 25.6588919569943 27.637624111391812 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 3.0 15 6.5 16 13.5 17 20.0 18 24.0 19 30.5 20 42.5 21 52.0 22 61.5 23 98.5 24 155.0 25 184.0 26 225.0 27 330.5 28 467.5 29 540.0 30 624.5 31 745.5 32 956.0 33 1130.0 34 1268.5 35 1642.5 36 2108.0 37 2338.0 38 2509.5 39 3077.0 40 3638.0 41 3957.5 42 4112.0 43 4322.0 44 4472.5 45 4296.5 46 4180.0 47 4158.0 48 3943.5 49 3552.5 50 3354.0 51 3138.5 52 2655.0 53 2279.0 54 2171.0 55 2074.0 56 1846.0 57 1640.0 58 1565.0 59 1523.0 60 1437.0 61 1416.5 62 1440.0 63 1465.5 64 1466.5 65 1487.5 66 1571.0 67 1609.0 68 1612.0 69 1597.0 70 1584.0 71 1589.0 72 1589.5 73 1515.0 74 1372.5 75 1305.0 76 1208.0 77 1042.5 78 865.0 79 756.0 80 651.5 81 492.0 82 359.0 83 281.0 84 213.0 85 117.5 86 70.5 87 51.0 88 39.0 89 19.0 90 10.5 91 6.0 92 2.0 93 1.5 94 1.0 95 2.0 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 85105.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.01974032078022 #Duplication Level Percentage of deduplicated Percentage of total 1 75.5487849643932 48.36613594970918 2 13.242419792966743 16.95552552728982 3 5.137288011159239 9.866635332824158 4 2.184127450260627 5.593090887726926 5 1.1875045885030469 3.801186769285001 6 0.7855517216063432 3.017449033546795 7 0.48638132295719844 2.1796604194818165 8 0.3579032376477498 1.8330297867340344 9 0.2863225901181998 1.6497268080606309 >10 0.7837163203876366 6.737559485341636 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0011750190940602785 0.0 2 0.0 0.0 0.0 0.0011750190940602785 0.0 3 0.0 0.0 0.0 0.0011750190940602785 0.0 4 0.0 0.0 0.0 0.004700076376241114 0.0 5 0.0 0.0 0.0 0.004700076376241114 0.0 6 0.0 0.0 0.0 0.004700076376241114 0.0 7 0.0 0.0 0.0 0.004700076376241114 0.0 8 0.0 0.0 0.0 0.005875095470301393 0.0 9 0.0 0.0 0.0 0.009400152752482228 0.0 10 0.0 0.0 0.0 0.010575171846542506 0.0 11 0.0 0.0 0.0 0.010575171846542506 0.0 12 0.0 0.0 0.0 0.011750190940602786 0.0 13 0.0 0.0 0.0 0.012925210034663064 0.0 14 0.0 0.0 0.0 0.012925210034663064 0.0 15 0.0 0.0 0.0 0.012925210034663064 0.0 16 0.0 0.0 0.0 0.012925210034663064 0.0 17 0.0 0.0 0.0 0.012925210034663064 0.0 18 0.0 0.0 0.0 0.0164502673168439 0.0 19 0.0 0.0 0.0 0.0164502673168439 0.0 20 0.0 0.0 0.0 0.017625286410904176 0.0 21 0.0 0.0 0.0 0.017625286410904176 0.0 22 0.0 0.0 0.0 0.02115034369308501 0.0 23 0.0 0.0 0.0 0.02115034369308501 0.0 24 0.0 0.0 0.0 0.02232536278714529 0.0 25 0.0 0.0 0.0 0.02350038188120557 0.0 26 0.0 0.0 0.0 0.024675400975265847 0.0 27 0.0 0.0 0.0 0.03877563010398919 0.0 28 0.0 0.0 0.0 0.06815110745549616 0.0 29 0.0 0.0 0.0 0.09635156571294283 0.0 30 0.0 0.0 0.0 0.12102696668820868 0.0 31 0.0 0.0 0.0 0.16685271135655955 0.0 32 0.0 0.0 0.0 0.21150343693085014 0.0 33 0.0 0.0 0.0 0.25850420069326124 0.0 34 0.0 0.0 0.0 0.35955584278244523 0.0 35 0.0 0.0 0.0 0.527583573233065 0.0 36 0.0 0.0 0.0 0.7625873920451207 0.0 37 0.0 0.0 0.0 1.1879443040949416 0.0 38 0.0 0.0 0.0 1.6485517889665706 0.0 39 0.0 0.0 0.0 2.100934140179778 0.0 40 0.0 0.0 0.0 2.5803419305563717 0.0 41 0.0 0.0 0.0 3.042124434522061 0.0 42 0.0 0.0 0.0 3.530932377651137 0.0 43 0.0 0.0 0.0 4.143117325656542 0.0 44 0.0 0.0 0.0 4.785852770107514 0.0 45 0.0 0.0 0.0 5.573115563127901 0.0 46 0.0 0.0 0.0 6.28400211503437 0.0 47 0.0 0.0 0.0 7.114740614534986 0.0 48 0.0 0.0 0.0 7.852652605604841 0.0 49 0.0 0.0 0.0 8.57058927207567 0.0 50 0.0 0.0 0.0 9.183949239175137 0.0 51 0.0 0.0 0.0 9.919511192056872 0.0 52 0.0 0.0 0.0 10.496445567240468 0.0 53 0.0 0.0 0.0 11.195581928206334 0.0 54 0.0 0.0 0.0 11.870042888196933 0.0 55 0.0 0.0 0.0 12.609129898360848 0.0 56 0.0 0.0 0.0 13.324716526643558 0.0 57 0.0 0.0 0.0 14.035603078550027 0.0 58 0.0 0.0 0.0 14.697138828505963 0.0 59 0.0 0.0 0.0 15.289348451912344 0.0 60 0.0 0.0 0.0 15.919158686328652 0.0 61 0.0 0.0 0.0 16.52664355795782 0.0 62 0.0 0.0 0.0 17.109453028611714 0.0 63 0.0 0.0 0.0 17.76276364490923 0.0 64 0.0 0.0 0.0 18.337347981904706 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATAGCG 15 0.0022178125 70.00001 36 GGTAGTG 15 0.0022178125 70.00001 25 ATAGCGG 25 2.378434E-4 56.000004 37 GCGGTAA 20 0.0069300476 52.5 51 TAGCGGC 20 0.0069300476 52.5 38 TCGATCC 20 0.0069300476 52.5 22 TTCTTAG 20 0.0069300476 52.5 28 ACATCGA 20 0.0069300476 52.5 70 CAGTAAG 20 0.0069300476 52.5 11 CGGTAAC 20 0.0069300476 52.5 52 CTTAGGT 20 0.0069300476 52.5 30 GTTATAT 20 0.0069300476 52.5 3 TGGTAAT 20 0.0069300476 52.5 70 ACTTATC 35 2.0710662E-5 50.0 8 TACTGAC 50 6.111077E-8 49.000004 34 CTACTGA 55 1.2935197E-7 44.545456 33 TCTACAC 40 4.558862E-5 43.75 3 CGTAGGA 40 4.558862E-5 43.75 2 GACTATC 40 4.558862E-5 43.75 38 GAAAAAC 35 0.0012492288 40.0 25 >>END_MODULE