SRR1781165_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781165_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	77230
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	3766	4.8763433898744015	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG	353	0.45707626569985754	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	253	0.32759290431179594	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAACCTCGTATGCCGT	215	0.27838922698433255	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAAACTCGTATGCCGT	157	0.20328887737925677	No Hit
ATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTCTT	85	0.1100608571798524	RNA PCR Primer, Index 32 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCCATC	15	0.0022170295	70.00001	8
CGCAGTG	15	0.0022170295	70.00001	14
GATTATA	15	0.0022170295	70.00001	20
CCCGCTA	15	0.0022170295	70.00001	42
TCGTTGT	20	7.881937E-5	69.99999	34
ATCTCGT	535	0.0	56.26168	37
TCTCGTA	535	0.0	56.26168	38
ATCGTTG	25	2.3770437E-4	56.000004	33
TTTCAAC	25	2.3770437E-4	56.000004	42
CATCGTT	25	2.3770437E-4	56.000004	32
TATGCCG	610	0.0	55.65574	43
AATCTCG	535	0.0	55.607475	36
CGTATGC	600	0.0	55.416668	41
CTTGAAA	550	0.0	55.363632	57
GTATGCC	610	0.0	55.08197	42
TCGTATG	600	0.0	54.833332	40
GCCGTCT	600	0.0	54.833332	46
CCGTCTT	590	0.0	54.57627	47
CTCGTAT	585	0.0	54.44445	39
TTGAAAA	560	0.0	54.375	58