##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781163_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 268442 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.685935881866474 34.0 33.0 34.0 24.0 34.0 2 31.730150274547203 34.0 34.0 34.0 24.0 34.0 3 31.689601478159155 34.0 34.0 34.0 23.0 34.0 4 31.807906363385758 34.0 34.0 34.0 23.0 34.0 5 31.840077186133318 34.0 34.0 34.0 27.0 34.0 6 34.710041647730236 38.0 35.0 38.0 27.0 38.0 7 34.65921130076516 38.0 35.0 38.0 26.0 38.0 8 34.500249588365456 37.0 34.0 38.0 26.0 38.0 9 34.73095119243636 38.0 35.0 38.0 27.0 38.0 10-11 34.604901617481616 38.0 35.0 38.0 26.0 38.0 12-13 34.54645696277036 38.0 34.0 38.0 26.0 38.0 14-15 34.41718881546107 37.5 34.0 38.0 25.5 38.0 16-17 34.39210518473264 37.0 34.0 38.0 25.0 38.0 18-19 34.459734318772774 37.5 34.0 38.0 25.5 38.0 20-21 34.39011220300847 37.0 34.0 38.0 25.0 38.0 22-23 34.46088168021397 37.5 34.0 38.0 25.5 38.0 24-25 34.41970332511306 37.0 34.0 38.0 25.5 38.0 26-27 34.35136454057115 37.0 34.0 38.0 24.5 38.0 28-29 34.41801208454713 37.0 34.0 38.0 25.5 38.0 30-31 34.48837924020832 37.0 34.0 38.0 26.0 38.0 32-33 34.43512751357835 37.0 34.0 38.0 25.5 38.0 34-35 34.47088756602916 37.0 34.0 38.0 25.5 38.0 36-37 34.33429753913322 37.0 34.0 38.0 24.5 38.0 38-39 34.3395780094024 37.0 34.0 38.0 25.0 38.0 40-41 34.338549854344706 37.0 34.0 38.0 24.5 38.0 42-43 34.42690041051698 37.0 34.0 38.0 25.0 38.0 44-45 34.46083511522042 37.0 34.0 38.0 25.5 38.0 46-47 34.44907279784832 37.0 34.0 38.0 25.5 38.0 48-49 34.416732478524224 37.0 34.0 38.0 25.0 38.0 50-51 34.289947176671305 37.0 34.0 38.0 24.5 38.0 52-53 34.374933877709154 37.0 34.0 38.0 25.0 38.0 54-55 34.34000268214363 37.0 34.0 38.0 25.0 38.0 56-57 34.32438105810566 37.0 34.0 38.0 24.5 38.0 58-59 34.31849896811974 37.0 34.0 38.0 24.5 38.0 60-61 34.29206308997847 37.0 34.0 38.0 24.0 38.0 62-63 34.27174398939063 37.0 34.0 38.0 24.0 38.0 64-65 34.27591248761371 37.0 34.0 38.0 24.0 38.0 66-67 34.17767338941 37.0 34.0 38.0 24.0 38.0 68-69 33.95710060273728 37.0 34.0 38.0 23.5 38.0 70-71 34.12714850880265 37.0 34.0 38.0 24.0 38.0 72-73 34.114324509577486 37.0 34.0 38.0 24.0 38.0 74-75 34.12934265129898 37.0 34.0 38.0 24.0 38.0 76 32.83809165480812 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 6.0 13 28.0 14 101.0 15 284.0 16 572.0 17 963.0 18 1228.0 19 1365.0 20 1501.0 21 1569.0 22 1840.0 23 2258.0 24 2693.0 25 3308.0 26 4165.0 27 4946.0 28 5952.0 29 7081.0 30 8664.0 31 10605.0 32 13026.0 33 16189.0 34 20768.0 35 28267.0 36 42714.0 37 88348.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.042191609360685 18.368213617839235 9.685146139575775 24.90444863322431 2 23.529850023468757 20.680072417877977 31.15607840799875 24.633999150654518 3 19.638879161979126 22.097138301756058 29.36239485624455 28.901587680020263 4 14.14942520171955 16.507848995313697 36.60604525372334 32.73668054924342 5 13.76051437554481 33.309616229949114 36.158648795643 16.771220598863067 6 30.05341936060676 36.87314205675714 18.66399445690317 14.409444125732934 7 29.58255414577451 29.417155288665708 22.193993488351303 18.806297077208484 8 26.17250653772509 34.513973223266106 20.037102986864948 19.27641725214385 9 25.03334053538567 17.273377489364556 21.494028505226456 36.199253470023315 10-11 25.282742640868417 24.812249945984608 27.374814671325648 22.530192741821324 12-13 25.19315159326782 23.169250713375703 27.203455495041762 24.43414219831472 14-15 23.078728365903995 24.391861184166412 24.380499325738896 28.1489111241907 16-17 23.284545637418884 27.491599675162604 25.528233286892515 23.695621400525997 18-19 22.9090455293881 27.195818836098674 26.725512401189082 23.169623233324145 20-21 22.891909611759708 27.157076761460573 26.740413199126813 23.2106004276529 22-23 22.930092906475142 26.569054022842924 27.220218892721704 23.28063417796023 24-25 22.828208700575917 26.86204096229353 26.79778127118707 23.51196906594348 26-27 22.260115779199978 27.056496375380902 27.08611171128214 23.597276134136983 28-29 22.638223526869865 26.721042161807762 27.92800679476386 22.712727516558513 30-31 22.897683670960582 26.929094553013318 27.07922009223594 23.094001683790168 32-33 22.57079741620164 27.02743981940233 27.125226305868676 23.276536458527357 34-35 23.2217760261062 26.36770699070935 27.32620081805381 23.08431616513064 36-37 23.10908874170212 26.676712287943023 26.82721034711409 23.386988623240775 38-39 22.314503691672687 27.022597060072567 27.66351763136916 22.999381616885582 40-41 22.624626548751685 26.272341883907885 27.990031366179657 23.113000201160773 42-43 22.324375470306435 26.423026203053173 27.675810789667786 23.576787536972603 44-45 21.927641725214386 26.254460926382606 28.028214660895088 23.789682687507916 46-47 22.16400563250162 25.735168118252734 28.310212261866624 23.790613987379025 48-49 21.55325917702893 25.88324479775892 28.978885569322237 23.584610455889912 50-51 21.4599429299439 25.946014409071605 28.788155355719297 23.8058873052652 52-53 21.439826852727965 25.817122506910245 28.868992184531482 23.874058455830312 54-55 20.743214549139104 26.391920787358163 28.660939793325934 24.2039248701768 56-57 20.61711654659107 26.417997183749193 28.785547716080195 24.179338553579544 58-59 20.913456165577667 26.15220420053494 28.612139680079867 24.322199953807527 60-61 20.677837298187317 25.948808308684928 28.76971561827136 24.603638774856393 62-63 20.335677725542205 25.809672107941378 29.01166732478524 24.842982841731175 64-65 20.88626220934131 25.71970854039234 28.51211807392286 24.881911176343493 66-67 20.969334157844152 25.460062136327398 27.987982506463222 25.582621199365224 68-69 20.896879027871943 25.639244231528597 27.81867218989577 25.64520455070369 70-71 21.622920407387817 25.33936567303179 27.937506053449162 25.10020786613123 72-73 21.564248515508005 25.05494669239538 27.92484037520209 25.45596441689452 74-75 21.935837164080134 25.247912025688972 27.77043085657237 25.045819953658516 76 21.94515016279122 25.135038481310673 27.67376192995135 25.246049425946758 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.5 8 3.0 9 2.0 10 2.5 11 3.0 12 2.0 13 6.5 14 14.5 15 28.0 16 64.5 17 91.0 18 113.5 19 168.5 20 321.5 21 442.0 22 515.0 23 728.0 24 1039.0 25 1210.0 26 1422.0 27 1875.5 28 2347.5 29 2578.0 30 2981.5 31 3709.0 32 4718.0 33 5403.0 34 6000.0 35 7307.5 36 8786.0 37 9554.0 38 10274.0 39 11984.5 40 13836.5 41 15178.0 42 15658.0 43 15889.0 44 16218.5 45 16248.5 46 16180.0 47 15813.5 48 14532.5 49 13129.0 50 12640.0 51 11769.0 52 9939.5 53 8306.5 54 7632.0 55 7063.0 56 5993.0 57 5033.5 58 4575.0 59 4107.0 60 3448.5 61 3022.0 62 2786.0 63 2573.5 64 2278.5 65 2139.5 66 2055.5 67 2028.0 68 1924.5 69 1797.5 70 1760.0 71 1746.0 72 1701.0 73 1576.0 74 1413.5 75 1331.0 76 1216.0 77 993.0 78 813.0 79 741.0 80 664.5 81 502.5 82 356.0 83 295.0 84 239.5 85 174.0 86 137.5 87 111.0 88 77.0 89 37.5 90 24.5 91 15.5 92 14.0 93 10.0 94 5.0 95 2.5 96 1.0 97 2.0 98 2.0 99 5.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 268442.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.16957889345111 #Duplication Level Percentage of deduplicated Percentage of total 1 72.58772314535425 40.04634118763608 2 15.018392736781342 16.57116805889383 3 5.4889153600835225 9.084634469928107 4 2.066850666008341 4.5610912351731665 5 1.039418856460893 2.8672150302429986 6 0.6769119452191263 2.240696817941163 7 0.5119788174144448 1.9771959031385413 8 0.3929607741440731 1.7343584344938452 9 0.29996141454258535 1.489387043213852 >10 1.87856304139173 18.08590221396837 >50 0.03697856742073912 1.2618896289300514 >100 0.001344675178935968 0.08011997644000325 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.450398968864782E-4 0.0 2 0.0 0.0 0.0 7.450398968864782E-4 0.0 3 0.0 0.0 0.0 7.450398968864782E-4 0.0 4 0.0 0.0 0.0 0.0014900797937729565 0.0 5 0.0 0.0 0.0 0.002235119690659435 0.0 6 0.0 0.0 0.0 0.002235119690659435 0.0 7 0.0 0.0 0.0 0.002607639639102674 0.0 8 0.0 0.0 0.0 0.002607639639102674 0.0 9 0.0 0.0 0.0 0.0033526795359891523 0.0 10 0.0 0.0 0.0 0.0033526795359891523 0.0 11 0.0 0.0 0.0 0.0037251994844323916 0.0 12 0.0 0.0 0.0 0.0037251994844323916 0.0 13 0.0 0.0 0.0 0.0037251994844323916 0.0 14 0.0 0.0 0.0 0.0037251994844323916 0.0 15 0.0 0.0 0.0 0.004097719432875631 0.0 16 0.0 0.0 0.0 0.004097719432875631 0.0 17 0.0 0.0 0.0 0.004097719432875631 0.0 18 0.0 0.0 0.0 0.0048427593297621085 0.0 19 0.0 0.0 0.0 0.0048427593297621085 0.0 20 0.0 0.0 0.0 0.005215279278205348 0.0 21 0.0 0.0 0.0 0.005215279278205348 0.0 22 0.0 0.0 0.0 0.006332839123535066 0.0 23 0.0 0.0 0.0 0.007077879020421543 0.0 24 0.0 0.0 0.0 0.0085679588141945 0.0 25 0.0 0.0 0.0 0.010058038607967456 0.0 26 0.0 0.0 0.0 0.011920638350183652 0.0 27 0.0 0.0 0.0 0.02235119690659435 0.0 28 0.0 0.0 0.0 0.03613443499899419 0.0 29 0.0 0.0 0.0 0.05699555211181559 0.0 30 0.0 0.0 0.0 0.06891619046199925 0.0 31 0.0 0.0 0.0 0.09163990731703683 0.0 32 0.0 0.0 0.0 0.11399110422363118 0.0 33 0.0 0.0 0.0 0.15012553922262536 0.0 34 0.0 0.0 0.0 0.20116077215934913 0.0 35 0.0 0.0 0.0 0.28386020071374823 0.0 36 0.0 0.0 0.0 0.39636122514360644 0.0 37 0.0 0.0 0.0 0.6016197167358313 0.0 38 0.0 0.0 0.0 0.8787745583776011 0.0 39 0.0 0.0 0.0 1.2162776316671757 0.0 40 0.0 0.0 0.0 1.596993018976166 0.0 41 0.0 0.0 0.0 2.0242733998405615 0.0 42 0.0 0.0 0.0 2.4821004164773024 0.0 43 0.0 0.0 0.0 3.0446055386265933 0.0 44 0.0 0.0 0.0 3.661871093197041 0.0 45 0.0 0.0 0.0 4.355130717249908 0.0 46 0.0 0.0 0.0 5.110228652744355 0.0 47 0.0 0.0 0.0 5.829937193136693 0.0 48 0.0 0.0 0.0 6.567154171105862 0.0 49 0.0 0.0 0.0 7.29021539103419 0.0 50 0.0 0.0 0.0 7.950320739675609 0.0 51 0.0 0.0 0.0 8.55194045641144 0.0 52 0.0 0.0 0.0 9.193047287682255 0.0 53 0.0 0.0 0.0 9.860975555240984 0.0 54 0.0 0.0 0.0 10.534864141974802 0.0 55 0.0 0.0 0.0 11.252337562676482 0.0 56 0.0 0.0 0.0 11.954537665491987 0.0 57 0.0 0.0 0.0 12.644817129957309 0.0 58 0.0 0.0 0.0 13.327273675505323 3.725199484432391E-4 59 0.0 0.0 0.0 13.95608734847751 3.725199484432391E-4 60 0.0 0.0 0.0 14.624388135984683 3.725199484432391E-4 61 0.0 0.0 0.0 15.242398730452015 3.725199484432391E-4 62 0.0 0.0 0.0 15.881270442032172 3.725199484432391E-4 63 0.0 0.0 0.0 16.515299394282565 3.725199484432391E-4 64 0.0 0.0 0.0 17.091960274472697 3.725199484432391E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGACCG 20 0.0069462615 52.5 42 GGTCTAA 20 0.0069462615 52.5 1 TACACGT 20 0.0069462615 52.5 28 CGGTAAG 35 0.0012540503 40.0 28 CCAAACG 35 0.0012540503 40.0 9 GGACTAT 45 9.183059E-5 38.88889 6 CTTCGTC 40 0.0024161418 35.0 21 AGTGCGC 55 2.9873886E-4 31.818184 10 CAGTATT 55 2.9873886E-4 31.818184 14 TCGTTCG 45 0.004302636 31.111113 23 TCTTCGT 45 0.004302636 31.111113 20 TTTAACG 45 0.004302636 31.111113 49 CCATACG 45 0.004302636 31.111113 23 TTGCGAT 45 0.004302636 31.111113 49 TTCGGTA 45 0.004302636 31.111113 26 CCGTGCG 95 2.8109935E-7 29.473682 9 CGTGCGA 60 4.974239E-4 29.166668 10 TAACGGC 50 0.0072006807 27.999998 51 TCTAGCA 100 4.4033732E-7 27.999998 3 CGATGTG 50 0.0072006807 27.999998 15 >>END_MODULE