##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781163_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 250791 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.1819562902975 34.0 34.0 34.0 32.0 34.0 2 33.317040882647305 34.0 34.0 34.0 33.0 34.0 3 33.35739320789023 34.0 34.0 34.0 33.0 34.0 4 33.422040663341186 34.0 34.0 34.0 34.0 34.0 5 33.42842845237668 34.0 34.0 34.0 34.0 34.0 6 36.839467923490076 38.0 37.0 38.0 34.0 38.0 7 36.7774441666567 38.0 37.0 38.0 34.0 38.0 8 36.55276305768548 38.0 37.0 38.0 34.0 38.0 9 36.5397801356508 38.0 37.0 38.0 34.0 38.0 10-11 36.454228820013476 38.0 37.0 38.0 34.0 38.0 12-13 36.40869090198612 38.0 37.0 38.0 34.0 38.0 14-15 36.40643005530501 38.0 37.0 38.0 34.0 38.0 16-17 36.366023900379204 38.0 37.0 38.0 34.0 38.0 18-19 36.359526458285984 38.0 37.0 38.0 34.0 38.0 20-21 36.30878899163048 38.0 37.0 38.0 34.0 38.0 22-23 36.36349988635956 38.0 37.0 38.0 34.0 38.0 24-25 36.35562879050684 38.0 37.0 38.0 34.0 38.0 26-27 36.15420609192515 38.0 37.0 38.0 33.5 38.0 28-29 36.123513204221844 38.0 37.0 38.0 33.5 38.0 30-31 36.165059750948004 38.0 37.0 38.0 34.0 38.0 32-33 36.08355164260281 38.0 37.0 38.0 33.0 38.0 34-35 36.099672635780394 38.0 37.0 38.0 33.5 38.0 36-37 36.07605934822223 38.0 37.0 38.0 32.5 38.0 38-39 36.03212635222157 38.0 37.0 38.0 32.0 38.0 40-41 36.06460359422786 38.0 37.0 38.0 32.5 38.0 42-43 36.06149343477238 38.0 37.0 38.0 32.5 38.0 44-45 36.032868005630185 38.0 37.0 38.0 32.0 38.0 46-47 36.06124821066147 38.0 37.0 38.0 32.5 38.0 48-49 36.037044790283545 38.0 37.0 38.0 32.0 38.0 50-51 35.95329178479292 38.0 37.0 38.0 32.0 38.0 52-53 35.98106989485269 38.0 37.0 38.0 32.0 38.0 54-55 35.996507051688454 38.0 37.0 38.0 32.0 38.0 56-57 35.948166002767245 38.0 37.0 38.0 32.0 38.0 58-59 35.950085928123414 38.0 37.0 38.0 32.0 38.0 60-61 35.96177295038498 38.0 37.0 38.0 32.0 38.0 62-63 35.920902265232804 38.0 37.0 38.0 32.0 38.0 64-65 35.88567173463163 38.0 37.0 38.0 32.0 38.0 66-67 35.8623794314788 38.0 36.5 38.0 31.5 38.0 68-69 35.786399830934926 38.0 36.5 38.0 31.0 38.0 70-71 35.702124478151134 38.0 36.0 38.0 31.0 38.0 72-73 35.63069647634883 38.0 36.0 38.0 31.0 38.0 74-75 35.62761422858077 38.0 36.0 38.0 31.0 38.0 76 34.75377106833977 37.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 0.0 20 1.0 21 5.0 22 35.0 23 71.0 24 160.0 25 301.0 26 576.0 27 1002.0 28 1780.0 29 3003.0 30 4594.0 31 6925.0 32 10034.0 33 14385.0 34 20195.0 35 28273.0 36 44547.0 37 114902.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.209720444513565 18.375858782811186 10.551415321921441 26.863005450753814 2 23.112870876546605 20.86598003915611 31.66580937912445 24.35533970517283 3 19.956457767623238 22.56460558791982 29.55967319401414 27.9192634504428 4 14.029211574578035 17.83118213970996 36.386473198799 31.753133086913003 5 13.54514316701955 34.2344820986399 36.33782711500812 15.882547619332431 6 30.089197778229682 37.8853308133067 17.997456049060773 14.028015359402849 7 28.767778748041195 29.725149626581498 21.688178602900425 19.818893022476882 8 25.691113317463543 35.846980154790245 19.124290744085712 19.337615783660496 9 24.456220518280162 17.103484574805318 20.928183228265766 37.51211167864876 10-11 24.900215717469926 25.58604575124307 27.23682269299935 22.276915838287657 12-13 24.63565279455802 23.272764971629766 27.168638428013764 24.922943805798454 14-15 22.598298982020886 24.322045049463497 23.84216339501816 29.237492573497452 16-17 23.573413718993105 28.09191717406127 24.91995326786049 23.414715839085133 18-19 23.194811616046827 26.990003628519364 26.237783652523415 23.577401102910393 20-21 22.363242700096894 27.057988524309085 26.0938390931094 24.48492968248462 22-23 22.677049814387278 27.349067550270945 26.441738339892577 23.532144295449196 24-25 23.2781479399181 27.29723155934623 26.399472070369352 23.025148430366322 26-27 22.555035866518335 27.646925128892185 26.686563712413925 23.111475292175555 28-29 22.507386628706772 26.666826162023362 27.742223604515313 23.083563604754556 30-31 22.350283702365715 27.373988699753976 26.79402370898477 23.481703888895535 32-33 22.098081669597395 27.768739707565267 26.4846027170034 23.64857590583394 34-35 22.62122643954528 26.268885247078245 27.51853136675558 23.59135694662089 36-37 22.54965289823 26.961493833510776 26.64230375093205 23.846549517327176 38-39 21.946561080740537 27.051209971649698 27.502781200282307 23.499447747327455 40-41 22.089708163371093 26.06114254498766 28.238254163825655 23.610895127815592 42-43 22.737059942342427 25.9682364997149 27.84250631003505 23.45219724790762 44-45 21.704925615353023 26.823729719168547 28.039483075548965 23.43186158992946 46-47 22.308814909625944 25.745740477130358 27.866031875147034 24.07941273809666 48-49 21.907085979959408 25.907030156584565 28.069787193320334 24.11609667013569 50-51 21.17719535390026 25.81053546578625 28.79888034259603 24.21338883771746 52-53 20.929379443440954 25.73597138653301 29.71557990518001 23.619069264846026 54-55 20.272258573872268 26.071908481564332 29.159937956306248 24.495894988257156 56-57 20.684753440115475 25.95747056313823 28.586352779804695 24.771423216941596 58-59 20.274451635026775 25.79837394483853 29.349936799964908 24.577237620169782 60-61 20.791415959902867 26.448516892551964 28.234864887495963 24.525202260049202 62-63 19.71701536339023 27.058387262700816 27.991833837737403 25.232763536171554 64-65 19.87511513571061 27.453935747295553 27.314975417778147 25.355973699215685 66-67 19.95326786048941 27.40070417199979 26.80100163084002 25.845026336670774 68-69 20.096813681511698 27.582130140236295 26.493773700013158 25.82728247823885 70-71 20.310736828674074 27.413862538926836 26.338664465630746 25.93673616676834 72-73 20.017664110753575 26.696133433815405 26.48958694690001 26.79661550853101 74-75 20.068503255698968 26.921221255946186 26.141089592529237 26.86918589582561 76 20.223213751689652 26.765314544780317 26.046389224493705 26.96508247903633 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 4.0 12 8.0 13 6.0 14 12.0 15 25.0 16 67.0 17 104.0 18 117.0 19 199.0 20 326.0 21 384.0 22 482.0 23 720.0 24 1029.5 25 1199.0 26 1394.5 27 1770.5 28 2310.0 29 2669.0 30 2956.5 31 3666.0 32 4677.5 33 5267.0 34 5684.0 35 6652.0 36 8084.0 37 8965.0 38 9450.0 39 10926.5 40 12826.5 41 14320.5 42 14906.0 43 15070.5 44 15448.0 45 15469.0 46 15277.0 47 14981.0 48 13721.0 49 12047.0 50 11337.0 51 10723.5 52 9127.0 53 7589.5 54 7035.0 55 6565.0 56 5516.5 57 4500.0 58 4062.0 59 3693.0 60 3018.5 61 2591.5 62 2470.0 63 2321.5 64 2057.5 65 1941.0 66 1884.5 67 1829.0 68 1828.0 69 1748.5 70 1677.0 71 1684.0 72 1603.0 73 1413.0 74 1308.5 75 1313.0 76 1206.5 77 1021.0 78 843.5 79 745.0 80 659.0 81 514.0 82 383.5 83 312.0 84 252.0 85 153.0 86 93.0 87 72.0 88 54.0 89 28.5 90 18.5 91 11.5 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 250791.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.01658703592441 #Duplication Level Percentage of deduplicated Percentage of total 1 63.96284341266886 30.712774377896185 2 19.858610136800152 19.070853640923108 3 7.220113960524788 10.400556911844944 4 2.831378928469901 5.438126110022297 5 1.3490978768937818 3.2389537812925555 6 0.8371172862756447 2.4117309021438813 7 0.6221339400039205 2.091092393474058 8 0.47446133600645296 1.8225611228427863 9 0.3898506573413958 1.684736821732093 >10 2.3955003256442757 20.204828530429268 >50 0.053915338860604414 1.611447453798611 >100 0.004147333758508032 0.3337600015529501 >500 0.0 0.0 >1k 8.294667517016065E-4 0.9785779520472535 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCGT 2457 0.9797002284770986 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCG 296 0.11802656395165695 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.987383917285708E-4 0.0 2 0.0 0.0 0.0 3.987383917285708E-4 0.0 3 0.0 0.0 0.0 3.987383917285708E-4 0.0 4 0.0 0.0 0.0 0.0015949535669142832 0.0 5 0.0 0.0 0.0 0.0023924303503714247 0.0 6 0.0 0.0 0.0 0.0023924303503714247 0.0 7 0.0 0.0 0.0 0.0027911687420999957 0.0 8 0.0 0.0 0.0 0.0031899071338285664 0.0 9 0.0 0.0 0.0 0.004386122309014279 0.0 10 0.0 0.0 0.0 0.004386122309014279 0.0 11 0.0 0.0 0.0 0.004386122309014279 0.0 12 0.0 0.0 0.0 0.004386122309014279 0.0 13 0.0 0.0 0.0 0.004386122309014279 0.0 14 0.0 0.0 0.0 0.004386122309014279 0.0 15 0.0 0.0 0.0 0.004784860700742849 0.0 16 0.0 0.0 0.0 0.004784860700742849 0.0 17 0.0 0.0 0.0 0.004784860700742849 0.0 18 0.0 0.0 0.0 0.0055823374841999914 0.0 19 0.0 0.0 0.0 0.0055823374841999914 0.0 20 0.0 0.0 0.0 0.005981075875928562 0.0 21 0.0 0.0 0.0 0.005981075875928562 0.0 22 0.0 0.0 0.0 0.006379814267657133 0.0 23 0.0 0.0 0.0 0.0075760294428428455 0.0 24 0.0 0.0 0.0 0.008373506226299987 0.0 25 0.0 0.0 0.0 0.00996845979321427 3.987383917285708E-4 26 0.0 0.0 0.0 0.011563413360128554 3.987383917285708E-4 27 0.0 0.0 0.0 0.023126826720257107 3.987383917285708E-4 28 0.0 0.0 0.0 0.03628519364729994 3.987383917285708E-4 29 0.0 0.0 0.0 0.05701959001718562 3.987383917285708E-4 30 0.0 0.0 0.0 0.07017795694422846 3.987383917285708E-4 31 0.0 0.0 0.0 0.09450099883967128 3.987383917285708E-4 32 0.0 0.0 0.0 0.11962151751857124 3.987383917285708E-4 33 0.0 0.0 0.0 0.15750166473278546 3.987383917285708E-4 34 0.0 0.0 0.0 0.21372377796651396 3.987383917285708E-4 35 0.0 0.0 0.0 0.2990537937964281 3.987383917285708E-4 36 0.0 0.0 0.0 0.4138904506142565 3.987383917285708E-4 37 0.0 0.0 0.0 0.6367852115905276 3.987383917285708E-4 38 0.0 0.0 0.0 0.9166995625839843 3.987383917285708E-4 39 0.0 0.0 0.0 1.2667918705216694 3.987383917285708E-4 40 0.0 0.0 0.0 1.658352971199126 3.987383917285708E-4 41 0.0 0.0 0.0 2.1053387083268538 3.987383917285708E-4 42 0.0 0.0 0.0 2.5830273016176815 3.987383917285708E-4 43 0.0 0.0 0.0 3.1731601213759664 3.987383917285708E-4 44 0.0 0.0 0.0 3.8087491177913084 3.987383917285708E-4 45 0.0 0.0 0.0 4.526478222902735 3.987383917285708E-4 46 0.0 0.0 0.0 5.30920168586592 3.987383917285708E-4 47 0.0 0.0 0.0 6.040487896296119 3.987383917285708E-4 48 0.0 0.0 0.0 6.78812238078719 3.987383917285708E-4 49 0.0 0.0 0.0 7.525788405485045 3.987383917285708E-4 50 0.0 0.0 0.0 8.197263857155958 3.987383917285708E-4 51 0.0 0.0 0.0 8.808928550067586 3.987383917285708E-4 52 0.0 0.0 0.0 9.460467082152071 3.987383917285708E-4 53 0.0 0.0 0.0 10.132341272214713 3.987383917285708E-4 54 0.0 0.0 0.0 10.816975090812669 3.987383917285708E-4 55 0.0 0.0 0.0 11.548261301242867 3.987383917285708E-4 56 0.0 0.0 0.0 12.257218161736267 3.987383917285708E-4 57 0.0 0.0 0.0 12.988105633774737 3.987383917285708E-4 58 0.0 0.0 0.0 13.672340713980963 3.987383917285708E-4 59 0.0 0.0 0.0 14.349398503136078 3.987383917285708E-4 60 0.0 0.0 0.0 15.028449984249834 3.987383917285708E-4 61 0.0 0.0 0.0 15.652874305696775 3.987383917285708E-4 62 0.0 0.0 0.0 16.29922923868879 3.987383917285708E-4 63 0.0 0.0 0.0 16.95156524755673 3.987383917285708E-4 64 0.0 0.0 0.0 17.535716991439088 3.987383917285708E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAGAT 20 7.916552E-5 70.00001 3 TCTCGTA 340 0.0 56.617645 38 CTCGTAT 390 0.0 56.538464 39 CGTAGTG 25 2.3874213E-4 55.999996 54 ATCTCGT 340 0.0 55.588234 37 CCGTCTT 400 0.0 55.124996 47 TATGCCG 420 0.0 54.16667 43 TCGTATG 425 0.0 53.52941 40 CGTATGC 430 0.0 52.90698 41 GCCGTCT 425 0.0 52.705883 46 CGGAAAT 20 0.006945731 52.500004 15 ATCGGTT 20 0.006945731 52.500004 22 GACGAAA 20 0.006945731 52.500004 57 TATCGGT 20 0.006945731 52.500004 21 GCGTAAG 20 0.006945731 52.500004 1 CGTCTTC 425 0.0 51.88235 48 ATGCCGT 435 0.0 51.494255 44 CATCTCG 370 0.0 51.08108 36 GTATGCC 460 0.0 49.45652 42 TCTTCTG 435 0.0 48.275864 50 >>END_MODULE