##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781162_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 172829 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.96567127044651 34.0 32.0 34.0 21.0 34.0 2 31.141804905426753 34.0 32.0 34.0 23.0 34.0 3 31.165302119435975 34.0 32.0 34.0 23.0 34.0 4 31.254245525924468 34.0 33.0 34.0 23.0 34.0 5 31.274317388864137 34.0 33.0 34.0 23.0 34.0 6 34.12154210230922 37.0 34.0 38.0 24.0 38.0 7 34.043644295806835 37.0 34.0 38.0 24.0 38.0 8 33.84004420554421 37.0 34.0 38.0 23.0 38.0 9 34.15892008864253 37.0 34.0 38.0 24.0 38.0 10-11 33.99124278911525 37.0 34.0 38.0 23.0 38.0 12-13 33.97124903806653 37.0 34.0 38.0 23.0 38.0 14-15 33.79042001053064 37.0 34.0 38.0 23.0 38.0 16-17 33.767889069542726 37.0 34.0 38.0 22.5 38.0 18-19 33.81170984036244 37.0 34.0 38.0 23.0 38.0 20-21 33.73181873412448 37.0 34.0 38.0 22.5 38.0 22-23 33.82225494563991 37.0 34.0 38.0 23.0 38.0 24-25 33.82476031221612 37.0 34.0 38.0 23.0 38.0 26-27 33.71503914273646 37.0 34.0 38.0 22.5 38.0 28-29 33.82699951975653 37.0 34.0 38.0 23.0 38.0 30-31 33.897809395413965 37.0 34.0 38.0 23.0 38.0 32-33 33.86411713312002 37.0 34.0 38.0 23.0 38.0 34-35 33.86742097680366 37.0 34.0 38.0 23.0 38.0 36-37 33.71468040664472 37.0 34.0 38.0 22.5 38.0 38-39 33.722251474000316 37.0 34.0 38.0 22.5 38.0 40-41 33.72580990458778 37.0 34.0 38.0 22.5 38.0 42-43 33.81440904014951 37.0 34.0 38.0 23.0 38.0 44-45 33.82672757465472 37.0 34.0 38.0 23.0 38.0 46-47 33.81381596838494 37.0 34.0 38.0 23.0 38.0 48-49 33.777812172725646 37.0 34.0 38.0 23.0 38.0 50-51 33.642953439526934 37.0 34.0 38.0 22.5 38.0 52-53 33.701109188851404 37.0 34.0 38.0 23.0 38.0 54-55 33.69284668660931 37.0 34.0 38.0 23.0 38.0 56-57 33.663366680360355 37.0 34.0 38.0 22.5 38.0 58-59 33.64037864015877 37.0 34.0 38.0 22.5 38.0 60-61 33.62984800004629 37.0 34.0 38.0 22.5 38.0 62-63 33.5809528493482 37.0 34.0 38.0 22.0 38.0 64-65 33.5990169473873 37.0 34.0 38.0 22.0 38.0 66-67 33.50321126662771 37.0 34.0 38.0 22.0 38.0 68-69 33.279333908082556 37.0 33.5 38.0 21.5 38.0 70-71 33.46782658002997 37.0 34.0 38.0 22.0 38.0 72-73 33.431715742149755 37.0 33.5 38.0 22.0 38.0 74-75 33.4446794230135 37.0 33.0 38.0 22.0 38.0 76 32.056020690972 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 7.0 13 26.0 14 80.0 15 268.0 16 610.0 17 1071.0 18 1537.0 19 1617.0 20 1667.0 21 1590.0 22 1700.0 23 1915.0 24 2277.0 25 2657.0 26 2984.0 27 3569.0 28 4395.0 29 5123.0 30 6079.0 31 7152.0 32 8608.0 33 10443.0 34 12923.0 35 16985.0 36 24986.0 37 52559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.793819324303215 18.282811333746075 9.528493481996655 26.39487585995406 2 23.099711275306806 19.41051559634089 32.31633580012613 25.173437328226168 3 19.754786523095085 21.76602306325906 29.258399921309504 29.220790492336356 4 13.932846918051947 15.651887125424551 36.738626040768615 33.67663991575488 5 14.121472669517269 33.87683779921194 35.94246335973708 16.059226171533712 6 30.959503324094918 37.06727458933396 17.380185038390547 14.593037048180571 7 29.63044396484386 28.749804720272635 22.011352261483893 19.6083990533996 8 26.339908232993302 33.882623865207805 19.298265916021037 20.479201985777852 9 24.921743457405874 14.818115015419867 21.27189302721187 38.98824849996239 10-11 25.6701710939715 24.131656145669997 27.504643317961687 22.69352944239682 12-13 25.628222115501448 22.50229996123336 26.387932580759017 25.48154534250618 14-15 23.779863333121178 23.698279802579428 23.779284726521592 28.742572137777806 16-17 24.02663904784498 26.453315126512333 25.132934866255084 24.387110959387602 18-19 23.288337026772126 25.98956193694345 26.605777965503474 24.116323070780947 20-21 23.363266581418625 26.20625010848874 26.239519987964982 24.19096332212765 22-23 23.83020210728524 25.733817819926053 26.59767747310926 23.83830259967945 24-25 23.45844736705067 26.04742259690214 26.286965729131108 24.207164306916084 26-27 22.78350276863258 26.394007950054675 26.41859873053712 24.40389055077562 28-29 23.325367849145685 25.787338930387836 27.370985193457116 23.516308027009355 30-31 23.720845459963318 25.835652581453346 26.65090928027125 23.79259267831209 32-33 22.99990163687807 26.388800490658397 26.44376811761915 24.167529754844384 34-35 24.001758964062745 25.515393828582013 26.80076838956425 23.682078817790998 36-37 23.71361287746848 25.59842387562273 26.24848839025858 24.439474856650214 38-39 22.93017954162785 26.04308304740524 27.120159232536206 23.906578178430703 40-41 23.354008875825237 25.11557666826748 27.6009813167929 23.929433139114384 42-43 22.997008603880136 25.53419854306858 27.047254800988256 24.42153805206302 44-45 22.52775865161518 25.31027778902846 27.431160279814154 24.730803279542208 46-47 22.786395801630512 25.07883514919371 27.619207424679885 24.515561624495888 48-49 22.162079280676274 25.033125227826346 28.343622887362653 24.461172604134724 50-51 22.19274543045438 24.995805102152996 27.98054724612189 24.830902221270737 52-53 21.849631716899363 25.00650932424535 28.392804448327535 24.751054510527748 54-55 21.09715383413663 25.42831353534418 28.71884926719474 24.755683363324444 56-57 21.259452985320753 25.43554611783902 28.147475250102705 25.15752564673753 58-59 21.34595467195899 25.301887993334454 28.208518246359116 25.14363908834744 60-61 20.997922802307485 24.980182723964152 28.24728488853144 25.774609585196927 62-63 20.80524680464505 24.971503624970346 28.561178968807315 25.66207060157728 64-65 21.51259337264001 25.026760555230894 28.06213077666364 25.39851529546546 66-67 21.64654080044437 24.88934148782901 27.327589698488104 26.136528013238518 68-69 21.41914840680673 24.937365835594722 27.13751743052381 26.505968327074736 70-71 22.024434627390736 24.442727906566336 27.537124953349707 25.99571251269322 72-73 22.246266540916164 23.980929126477616 27.273779284726523 26.499025047879698 74-75 22.284743879788692 24.351237350213218 27.334822280982934 26.029196489015156 76 22.755440348552618 23.84148493597718 27.204925099375682 26.198149616094526 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 3.5 15 6.5 16 20.0 17 33.0 18 46.0 19 71.0 20 102.0 21 121.0 22 164.0 23 254.0 24 381.0 25 461.0 26 561.5 27 786.5 28 1040.0 29 1169.0 30 1383.5 31 1834.5 32 2394.5 33 2718.0 34 3042.5 35 3870.0 36 4885.0 37 5397.0 38 6045.5 39 7252.5 40 8458.0 41 9592.0 42 10079.0 43 10216.5 44 10530.0 45 10799.5 46 10893.0 47 10670.0 48 9884.5 49 8866.0 50 8410.0 51 7883.5 52 6709.5 53 5674.5 54 5287.0 55 4886.5 56 4106.5 57 3483.5 58 3240.0 59 2847.5 60 2321.0 61 2108.5 62 2030.0 63 1955.5 64 1798.5 65 1677.0 66 1562.0 67 1486.0 68 1491.5 69 1484.5 70 1446.0 71 1420.0 72 1402.0 73 1315.0 74 1162.5 75 1079.0 76 1027.0 77 861.0 78 684.5 79 622.0 80 530.0 81 397.0 82 305.5 83 255.0 84 222.5 85 144.0 86 72.0 87 46.0 88 37.0 89 27.5 90 19.0 91 6.5 92 2.0 93 4.0 94 3.5 95 2.5 96 4.0 97 2.5 98 0.5 99 2.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.8930329979343745E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 172829.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.76701826661034 #Duplication Level Percentage of deduplicated Percentage of total 1 73.75625504439064 39.65653912248523 2 13.24078557976863 14.238351202633817 3 5.077212806026365 8.189597810552627 4 2.2814097390368575 4.906583964496699 5 1.171912832929782 3.150512934750534 6 0.8189400053806833 2.6419177337136706 7 0.5918751681463547 2.2276354084094683 8 0.44874899112187244 1.9302316162218145 9 0.387409200968523 1.8746853826614747 >10 2.198547215496368 20.29751951350757 >50 0.026903416733925208 0.8864253105670923 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 5.786065995868749E-4 0.0 2 0.0 0.0 0.0 5.786065995868749E-4 0.0 3 0.0 0.0 0.0 5.786065995868749E-4 0.0 4 0.0 0.0 0.0 0.0011572131991737498 0.0 5 0.0 0.0 0.0 0.0011572131991737498 0.0 6 0.0 0.0 0.0 0.0011572131991737498 0.0 7 0.0 0.0 0.0 0.0011572131991737498 0.0 8 0.0 0.0 0.0 0.0011572131991737498 0.0 9 0.0 0.0 0.0 0.0023144263983474996 0.0 10 0.0 0.0 0.0 0.0023144263983474996 0.0 11 0.0 0.0 0.0 0.0023144263983474996 0.0 12 0.0 0.0 0.0 0.0023144263983474996 0.0 13 0.0 0.0 0.0 0.0023144263983474996 0.0 14 0.0 0.0 0.0 0.0034716395975212494 0.0 15 0.0 0.0 0.0 0.0034716395975212494 0.0 16 0.0 0.0 0.0 0.0034716395975212494 0.0 17 0.0 0.0 0.0 0.0034716395975212494 0.0 18 0.0 0.0 0.0 0.0034716395975212494 0.0 19 0.0 0.0 0.0 0.005207459396281874 0.0 20 0.0 0.0 0.0 0.0057860659958687485 0.0 21 0.0 0.0 0.0 0.006943279195042499 0.0 22 0.0 0.0 0.0 0.008679098993803123 0.0 23 0.0 0.0 0.0 0.008679098993803123 0.0 24 0.0 0.0 0.0 0.010414918792563748 0.0 25 0.0 0.0 0.0 0.010993525392150623 0.0 26 0.0 0.0 0.0 0.012150738591324373 0.0 27 0.0 0.0 0.0 0.01677959138801937 0.0 28 0.0 0.0 0.0 0.03298057617645187 0.0 29 0.0 0.0 0.0 0.054967626960753115 0.0 30 0.0 0.0 0.0 0.07116861174918561 0.0 31 0.0 0.0 0.0 0.08910541633637874 0.0 32 0.0 0.0 0.0 0.1105138605210931 0.0 33 0.0 0.0 0.0 0.14349443669754497 0.0 34 0.0 0.0 0.0 0.20656255605251433 0.0 35 0.0 0.0 0.0 0.27946698760046057 0.0 36 0.0 0.0 0.0 0.4177539649017237 0.0 37 0.0 0.0 0.0 0.6173732417591955 0.0 38 0.0 0.0 0.0 0.8713815389778335 0.0 39 0.0 0.0 0.0 1.1757286103605298 0.0 40 0.0 0.0 0.0 1.5223139635130678 0.0 41 0.0 0.0 0.0 1.900722679642884 0.0 42 0.0 0.0 0.0 2.321369677542542 0.0 43 0.0 0.0 0.0 2.8276504521810577 0.0 44 0.0 0.0 0.0 3.437501808145624 0.0 45 0.0 0.0 0.0 4.157867024631283 0.0 46 0.0 0.0 0.0 4.932042654878521 0.0 47 0.0 0.0 0.0 5.774493863877011 0.0 48 0.0 0.0 0.0 6.571813758107725 0.0 49 0.0 0.0 0.0 7.3292097969669445 0.0 50 0.0 0.0 0.0 8.033374028664172 0.0 51 0.0 0.0 0.0 8.658269156217996 0.0 52 0.0 0.0 0.0 9.31845928634662 0.0 53 0.0 0.0 0.0 9.956083759091356 0.0 54 0.0 0.0 0.0 10.682813648172472 0.0 55 0.0 0.0 0.0 11.457567885019296 0.0 56 0.0 0.0 0.0 12.24389425385786 0.0 57 0.0 0.0 0.0 13.031377835895595 0.0 58 0.0 0.0 0.0 13.755793298578364 0.0 59 0.0 0.0 0.0 14.478472941462371 0.0 60 0.0 0.0 0.0 15.224875454929439 0.0 61 0.0 0.0 0.0 15.869443206869217 0.0 62 0.0 0.0 0.0 16.454414479051547 0.0 63 0.0 0.0 0.0 17.05442952282314 0.0 64 0.0 0.0 0.0 17.68684653617159 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACCG 20 0.0069420957 52.5 5 TTCGTAA 20 0.0069420957 52.5 23 GGTTCGG 20 0.0069420957 52.5 23 CAACCCG 30 5.86547E-4 46.666664 36 CGCAAGG 30 5.86547E-4 46.666664 45 TTTCCGA 40 4.5785382E-5 43.75 26 GGTCGAT 35 0.0012528105 40.0 10 GCACGCA 35 0.0012528105 40.0 37 CCCGTAC 35 0.0012528105 40.0 12 CGTCATC 35 0.0012528105 40.0 41 TAGAGCC 40 0.0024137686 35.0 4 GAAGTAC 40 0.0024137686 35.0 1 ACGCTTA 40 0.0024137686 35.0 59 TGCAGAC 40 0.0024137686 35.0 65 CGTACTA 65 2.0937556E-5 32.307693 14 GTTATAC 65 2.0937556E-5 32.307693 1 TTCCGAC 55 2.983015E-4 31.81818 27 GTACTAA 55 2.983015E-4 31.81818 15 GTCGATG 45 0.0042984365 31.111109 11 GGTCGGT 45 0.0042984365 31.111109 11 >>END_MODULE