##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781160_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 174742 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.251582332810656 34.0 32.0 34.0 23.0 34.0 2 31.21681107003468 34.0 32.0 34.0 23.0 34.0 3 31.124663790044753 34.0 32.0 34.0 23.0 34.0 4 31.30369916791613 34.0 33.0 34.0 23.0 34.0 5 31.34589280195946 34.0 33.0 34.0 23.0 34.0 6 34.012143617447435 37.0 34.0 38.0 23.0 38.0 7 33.95313662428037 37.0 34.0 38.0 24.0 38.0 8 33.70082178297147 37.0 34.0 38.0 22.0 38.0 9 34.09337194263543 37.0 34.0 38.0 24.0 38.0 10-11 33.94321628457955 37.0 34.0 38.0 23.0 38.0 12-13 33.896252761213674 37.0 34.0 38.0 23.0 38.0 14-15 33.77521717732428 37.0 34.0 38.0 22.5 38.0 16-17 33.73908962928203 37.0 34.0 38.0 22.5 38.0 18-19 33.78203293999153 37.0 34.0 38.0 22.5 38.0 20-21 33.709912327889114 37.0 34.0 38.0 22.5 38.0 22-23 33.763966304609085 37.0 34.0 38.0 22.5 38.0 24-25 33.77391811928443 37.0 34.0 38.0 22.5 38.0 26-27 33.67467180185645 37.0 34.0 38.0 22.0 38.0 28-29 33.75444941685456 37.0 34.0 38.0 22.5 38.0 30-31 33.84524041157822 37.0 34.0 38.0 23.0 38.0 32-33 33.78475695596937 37.0 34.0 38.0 22.5 38.0 34-35 33.80559052774949 37.0 34.0 38.0 23.0 38.0 36-37 33.65577823305216 37.0 34.0 38.0 22.0 38.0 38-39 33.66852559773838 37.0 34.0 38.0 22.0 38.0 40-41 33.671552918016275 37.0 34.0 38.0 22.5 38.0 42-43 33.73486339861053 37.0 34.0 38.0 22.5 38.0 44-45 33.757222075974866 37.0 34.0 38.0 22.5 38.0 46-47 33.72718636618558 37.0 34.0 38.0 22.5 38.0 48-49 33.68414863055247 37.0 34.0 38.0 22.0 38.0 50-51 33.546623021368646 37.0 34.0 38.0 22.0 38.0 52-53 33.64786370763755 37.0 34.0 38.0 22.0 38.0 54-55 33.59660528092846 37.0 34.0 38.0 22.0 38.0 56-57 33.58352313696764 37.0 34.0 38.0 22.0 38.0 58-59 33.57279017065159 37.0 34.0 38.0 22.0 38.0 60-61 33.53859118013986 37.0 34.0 38.0 22.0 38.0 62-63 33.49828318320724 37.0 34.0 38.0 22.0 38.0 64-65 33.50931945382335 37.0 34.0 38.0 22.0 38.0 66-67 33.40970402078493 37.0 34.0 38.0 21.0 38.0 68-69 33.178354373876914 37.0 33.5 38.0 21.0 38.0 70-71 33.35216776733699 37.0 34.0 38.0 21.5 38.0 72-73 33.33183207242678 37.0 33.5 38.0 21.0 38.0 74-75 33.3390884847375 37.0 33.0 38.0 21.5 38.0 76 31.93788556843804 36.0 30.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 23.0 14 104.0 15 296.0 16 686.0 17 1214.0 18 1673.0 19 1806.0 20 1763.0 21 1763.0 22 1699.0 23 2079.0 24 2321.0 25 2644.0 26 3093.0 27 3666.0 28 4345.0 29 5081.0 30 5948.0 31 7241.0 32 8549.0 33 10257.0 34 12814.0 35 16979.0 36 25328.0 37 53365.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.79904087168511 17.444575431207152 9.02416133499674 25.732222362110996 2 24.462350207734833 19.20774627736892 30.629156127319135 25.700747387577117 3 20.513671584392988 20.743152762358218 28.144922228199288 30.598253425049503 4 14.793810303189844 15.624749630884391 35.61536436575065 33.96607570017511 5 14.913987478682857 32.366574721589544 35.21935195888796 17.50008584083964 6 31.23404791063396 35.42193634043333 17.83772647674858 15.506289272184134 7 30.393379954447123 27.87194835815087 21.426445845875634 20.308225841526365 8 26.674182509070516 32.56515319728514 19.166542674342747 21.5941216193016 9 24.95736571631319 15.264790376669604 20.473040253631066 39.30480365338613 10-11 26.877339162880133 23.10806789438143 26.557725103295144 23.456867839443294 12-13 26.281031463529086 21.57952867656316 25.656682423229675 26.48275743667807 14-15 24.628023028235912 22.651394627507983 22.93180803699168 29.788774307264426 16-17 25.26181456089549 25.30587952524293 24.1149809433336 25.317324970527977 18-19 24.4663561135846 25.070675624635175 25.250369115610443 25.212599146169783 20-21 24.442606814618124 24.989699099243456 25.29529248835426 25.27240159778416 22-23 24.724737040894578 24.748200203728928 25.668986276911106 24.858076478465392 24-25 24.624017122386146 24.795412665529753 25.0414897391583 25.5390804729258 26-27 23.86547023611954 25.020887937645213 25.65181810898353 25.46182371725172 28-29 24.548477183504826 24.66379004475169 26.28017305513271 24.507559716610775 30-31 24.459488846413567 24.74562497853979 25.737658948621394 25.057227226425244 32-33 24.08922869144224 25.152224422291148 25.598882924540177 25.15966396172643 34-35 24.99399114122535 24.453193851506793 25.73508372343226 24.8177312838356 36-37 25.0228908905701 24.35047098007348 25.214602099094662 25.41203603026176 38-39 24.222854265145184 24.805141294022043 26.121653637934784 24.850350802897985 40-41 24.35647983884813 24.10525231484131 26.682480456902173 24.855787389408384 42-43 24.03686577926314 24.24603129184741 26.238111043710155 25.47899188517929 44-45 23.383330853486857 24.441462270089616 26.649288665575533 25.52591821084799 46-47 23.63427224136155 24.153037048906388 26.732268143892142 25.480422565839923 48-49 23.153277403257373 24.148172734660243 27.19180277208685 25.506747089995535 50-51 23.013642970779777 24.28151217223106 26.95001774044019 25.754827116548967 52-53 22.936958487369953 23.909249064334848 27.40754941571002 25.74624303258518 54-55 22.294010598482334 24.52301106774559 27.501115930915294 25.68186240285678 56-57 22.212747936958486 24.579666021906583 27.328289707111054 25.879296334023877 58-59 22.637946229298052 24.433450458390084 26.98750157374873 25.941101738563138 60-61 22.274330940274634 24.210333549843625 27.108328588228897 26.407006921652844 62-63 21.86601351138682 23.98113785219882 27.385023019717696 26.767825616696662 64-65 22.505465200123613 24.101818681255793 26.887926199768803 26.504789918851795 66-67 22.38249070770252 24.038079105421435 26.572107942303347 27.007322244572695 68-69 22.29887491272848 24.275503313456408 26.392052282794058 27.033569491021048 70-71 22.93673798153272 23.80344680571015 26.81131843322851 26.448496779528618 72-73 22.984457085302903 23.58419841823946 26.50822355243731 26.92312094402033 74-75 23.13382014627279 23.704375593732475 26.660447974728456 26.50135628526628 76 23.500932803790732 23.28289707111055 26.3422645958041 26.873905529294618 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 0.5 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.5 11 1.0 12 1.0 13 2.0 14 5.0 15 13.0 16 19.5 17 20.0 18 35.0 19 64.5 20 111.0 21 143.0 22 155.5 23 253.0 24 411.0 25 484.0 26 586.5 27 778.5 28 1020.5 29 1173.0 30 1390.0 31 1713.5 32 2295.0 33 2770.0 34 3005.5 35 3632.5 36 4506.0 37 4988.0 38 5526.0 39 6772.0 40 8025.5 41 8977.5 42 9384.0 43 9467.5 44 9510.5 45 9656.5 46 9843.0 47 9736.5 48 9138.0 49 8229.0 50 7812.0 51 7173.5 52 6022.0 53 5116.5 54 4724.0 55 4421.5 56 3846.0 57 3344.0 58 3115.0 59 2910.0 60 2600.5 61 2453.0 62 2410.0 63 2368.5 64 2375.5 65 2441.5 66 2445.0 67 2431.0 68 2435.5 69 2424.5 70 2426.0 71 2443.0 72 2353.5 73 2273.5 74 2196.0 75 2109.0 76 1954.0 77 1590.5 78 1262.0 79 1142.0 80 1018.0 81 783.0 82 563.5 83 455.0 84 360.5 85 225.5 86 150.0 87 115.0 88 83.0 89 39.0 90 18.5 91 6.5 92 3.0 93 5.5 94 5.0 95 1.5 96 1.0 97 0.5 98 1.5 99 4.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 2.861361321262204E-4 62-63 2.861361321262204E-4 64-65 0.0 66-67 2.861361321262204E-4 68-69 0.0 70-71 2.861361321262204E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 174742.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.13451831843518 #Duplication Level Percentage of deduplicated Percentage of total 1 75.35607684448807 43.054331528768124 2 12.953985456439431 14.802394387153633 3 4.740679901440333 8.125693880120407 4 1.9621787295418576 4.484325462682126 5 1.079749193693784 3.0845475043206556 6 0.7522185941224785 2.578658822721498 7 0.5338648610749415 2.1351478179258563 8 0.3996474288347122 1.826693067493791 9 0.3555760331737415 1.8284098842865482 >10 1.8499969951321142 17.548728983301096 >50 0.016025962058534828 0.531068661226265 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.722722642524408E-4 0.0 5 0.0 0.0 0.0 0.0017168167927573222 0.0 6 0.0 0.0 0.0 0.0017168167927573222 0.0 7 0.0 0.0 0.0 0.0017168167927573222 0.0 8 0.0 0.0 0.0 0.0017168167927573222 0.0 9 0.0 0.0 0.0 0.0034336335855146443 0.0 10 0.0 0.0 0.0 0.0034336335855146443 0.0 11 0.0 0.0 0.0 0.004005905849767085 0.0 12 0.0 0.0 0.0 0.004005905849767085 0.0 13 0.0 0.0 0.0 0.004005905849767085 0.0 14 0.0 0.0 0.0 0.004005905849767085 0.0 15 0.0 0.0 0.0 0.004005905849767085 0.0 16 0.0 0.0 0.0 0.004005905849767085 0.0 17 0.0 0.0 0.0 0.004578178114019526 0.0 18 0.0 0.0 0.0 0.004578178114019526 0.0 19 0.0 0.0 0.0 0.006867267171029289 0.0 20 0.0 0.0 0.0 0.006867267171029289 0.0 21 0.0 0.0 0.0 0.007439539435281729 0.0 22 0.0 0.0 0.0 0.010300900756543933 0.0 23 0.0 0.0 0.0 0.011445445285048815 0.0 24 0.0 0.0 0.0 0.012589989813553696 0.0 25 0.0 0.0 0.0 0.013162262077806137 0.0 26 0.0 0.0 0.0 0.014879078870563459 0.0 27 0.0 0.0 0.0 0.03147497453388424 0.0 28 0.0 0.0 0.0 0.048070870197205025 0.0 29 0.0 0.0 0.0 0.06752812718178801 0.0 30 0.0 0.0 0.0 0.08469629510936123 0.0 31 0.0 0.0 0.0 0.10300900756543933 0.0 32 0.0 0.0 0.0 0.12876125945679917 0.0 33 0.0 0.0 0.0 0.17339849606848953 0.0 34 0.0 0.0 0.0 0.2529443407995788 0.0 35 0.0 0.0 0.0 0.3542365315722608 0.0 36 0.0 0.0 0.0 0.5539595517963627 0.0 37 0.0 0.0 0.0 0.792024813725378 0.0 38 0.0 0.0 0.0 1.1147863707637546 0.0 39 0.0 0.0 0.0 1.4381202000663835 0.0 40 0.0 0.0 0.0 1.8118139886232274 0.0 41 0.0 0.0 0.0 2.1895136830298383 0.0 42 0.0 0.0 0.0 2.5740806446074784 0.0 43 0.0 0.0 0.0 3.0622288860148106 0.0 44 0.0 0.0 0.0 3.550949399686395 0.0 45 0.0 0.0 0.0 4.1506907326229525 0.0 46 0.0 0.0 0.0 4.828261093497843 0.0 47 0.0 0.0 0.0 5.532155978528345 0.0 48 0.0 0.0 0.0 6.208009522610477 0.0 49 0.0 0.0 0.0 6.8535326366872305 0.0 50 0.0 0.0 0.0 7.419509906032895 0.0 51 0.0 0.0 0.0 8.024973961611977 0.0 52 0.0 0.0 0.0 8.594384864543155 0.0 53 0.0 0.0 0.0 9.136326698790217 0.0 54 0.0 0.0 0.0 9.720616680591958 0.0 55 0.0 0.0 0.0 10.33065891428506 0.0 56 0.0 0.0 0.0 11.013951997802474 0.0 57 0.0 0.0 0.0 11.650318755651188 0.0 58 0.0 0.0 0.0 12.327316844261826 0.0 59 0.0 0.0 0.0 12.965400418903297 0.0 60 0.0 0.0 0.0 13.584026736560185 0.0 61 0.0 0.0 0.0 14.120818120428975 0.0 62 0.0 0.0 0.0 14.698813107323941 0.0 63 0.0 0.0 0.0 15.248194481006283 0.0 64 0.0 0.0 0.0 15.79814812695288 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTAAT 20 7.9098405E-5 70.00001 53 AACGCTA 20 7.9098405E-5 70.00001 51 CATCGTA 15 0.0022217387 70.00001 14 GCTAATC 20 7.9098405E-5 70.00001 54 TGACTCG 25 2.3854095E-4 55.999996 43 CGAATCA 20 0.0069422214 52.500004 41 CGTCAAG 20 0.0069422214 52.500004 19 CTCGTAA 30 5.865647E-4 46.666668 30 CTATCAG 30 5.865647E-4 46.666668 19 ACGCTAA 30 5.865647E-4 46.666668 52 CGTAAGA 30 5.865647E-4 46.666668 32 TTCTAAA 35 0.0012528484 40.0 46 CCTAGAT 35 0.0012528484 40.0 42 TAAACGC 35 0.0012528484 40.0 49 TCGTAAG 35 0.0012528484 40.0 31 GCGTCAA 35 0.0012528484 40.0 26 GACTCGC 35 0.0012528484 40.0 44 TCAGTGG 45 9.169897E-5 38.888885 58 GTTTGCA 40 0.0024138405 35.000004 30 TCCATAG 40 0.0024138405 35.000004 52 >>END_MODULE