SRR1781160_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781160_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157458
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT	3834	2.4349350302937927	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	385	0.2445096470169823	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCCGT	248	0.1575023180784717	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC	229	0.14543560822568558	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAAATGCCAACTCGTATGCCGT	161	0.10224948875255625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACA	15	0.00222133	70.00001	44
GATCTTA	15	0.00222133	70.00001	1
TATGCCG	535	0.0	57.57009	43
CGTATGC	545	0.0	56.513763	41
TCGTATG	545	0.0	56.513763	40
CTCGTAT	530	0.0	56.132076	39
CTTGAAA	505	0.0	55.445545	57
GTATGCC	560	0.0	55.0	42
CCGTCTT	505	0.0	54.752476	47
TCTCGTA	500	0.0	54.6	38
ATGCCGT	535	0.0	54.299065	44
CGTCTTC	505	0.0	54.059406	48
ATCTCGT	500	0.0	53.899998	37
GCCGTCT	540	0.0	53.148148	46
TGCCGTC	550	0.0	52.818184	45
CATCTCG	505	0.0	52.673267	36
CTCGAAA	20	0.006940956	52.499996	57
GGGCAGT	20	0.006940956	52.499996	37
ATGCAAG	20	0.006940956	52.499996	38
GCTTGAA	535	0.0	52.336445	56