##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781160_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157458 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.27270764267297 34.0 34.0 34.0 32.0 34.0 2 33.30469712558269 34.0 34.0 34.0 33.0 34.0 3 33.35964511171233 34.0 34.0 34.0 33.0 34.0 4 33.40878837531278 34.0 34.0 34.0 34.0 34.0 5 33.41061743449047 34.0 34.0 34.0 34.0 34.0 6 36.810076337817065 38.0 37.0 38.0 34.0 38.0 7 36.71056408693112 38.0 37.0 38.0 34.0 38.0 8 36.52307917031843 38.0 37.0 38.0 34.0 38.0 9 36.48388141599665 38.0 37.0 38.0 34.0 38.0 10-11 36.3988111115345 38.0 37.0 38.0 34.0 38.0 12-13 36.3370168552884 38.0 37.0 38.0 34.0 38.0 14-15 36.34799121035451 38.0 37.0 38.0 34.0 38.0 16-17 36.27698179832082 38.0 37.0 38.0 34.0 38.0 18-19 36.271996341881646 38.0 37.0 38.0 34.0 38.0 20-21 36.21492715517789 38.0 37.0 38.0 33.5 38.0 22-23 36.277407308615636 38.0 37.0 38.0 34.0 38.0 24-25 36.25213707782393 38.0 37.0 38.0 34.0 38.0 26-27 36.03650179730468 38.0 37.0 38.0 32.5 38.0 28-29 36.033253311994315 38.0 37.0 38.0 32.0 38.0 30-31 36.03761002934115 38.0 37.0 38.0 32.0 38.0 32-33 36.00595714412732 38.0 37.0 38.0 32.0 38.0 34-35 35.972811797431696 38.0 37.0 38.0 32.0 38.0 36-37 35.943816763835436 38.0 36.5 38.0 32.0 38.0 38-39 35.72905790750549 38.0 36.0 38.0 31.0 38.0 40-41 35.884032567414806 38.0 36.0 38.0 31.5 38.0 42-43 35.91762565255497 38.0 36.5 38.0 32.0 38.0 44-45 35.90336788222891 38.0 36.0 38.0 32.0 38.0 46-47 35.908569269265456 38.0 37.0 38.0 32.0 38.0 48-49 35.89396855034359 38.0 36.5 38.0 31.5 38.0 50-51 35.79162379809219 38.0 36.0 38.0 31.0 38.0 52-53 35.813620139973835 38.0 36.0 38.0 31.0 38.0 54-55 35.82855110569167 38.0 36.0 38.0 31.0 38.0 56-57 35.770672179247796 38.0 36.0 38.0 31.0 38.0 58-59 35.757227324111824 38.0 36.0 38.0 31.0 38.0 60-61 35.730054998793335 38.0 36.0 38.0 31.0 38.0 62-63 35.69528382171754 38.0 36.0 38.0 31.0 38.0 64-65 35.659394886255384 38.0 36.0 38.0 31.0 38.0 66-67 35.591783205680244 38.0 36.0 38.0 31.0 38.0 68-69 35.48091872118279 38.0 36.0 38.0 31.0 38.0 70-71 35.25314687091161 38.0 36.0 38.0 28.5 38.0 72-73 35.07594088582352 38.0 36.0 38.0 27.0 38.0 74-75 35.086146781999005 38.0 36.0 38.0 27.0 38.0 76 34.213155254099505 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 2.0 21 6.0 22 24.0 23 54.0 24 113.0 25 275.0 26 496.0 27 953.0 28 1469.0 29 2271.0 30 3451.0 31 5058.0 32 6957.0 33 9701.0 34 12981.0 35 17985.0 36 26634.0 37 69026.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.182842408769325 17.075664621676893 9.325026356234678 28.41646661331911 2 23.894625868485562 18.782786520850003 31.86373509126243 25.458852519401997 3 20.431480140735943 20.743944416923878 29.762222306900888 29.062353135439288 4 14.569599512250885 18.07402608949688 34.1894346428889 33.16693975536333 5 14.507360693010199 32.51851287327414 36.09406952965235 16.880056904063306 6 31.504274155647856 37.479835892746 16.275451231439494 14.74043872016665 7 29.567884769271807 27.627049752949993 20.069478845152357 22.735586632625843 8 25.861499574489706 35.46850588728423 17.904457061565623 20.76553747666044 9 24.503677171055138 14.78108447967077 19.076833187262636 41.63840516201145 10-11 26.01233344764953 24.294415018608138 26.58677234564138 23.106479188100952 12-13 25.576661712964725 21.129444042220783 25.961843793265505 27.332050451548984 14-15 23.655514486402723 21.90933455270612 21.945852227260605 32.489298733630555 16-17 26.025352792490697 26.242871114836973 22.689860153183705 25.041915939488625 18-19 25.636995262228655 24.935220820790306 23.505315703235148 25.922468213745887 20-21 23.692984795945584 24.650382959265325 23.726962110531062 27.92967013425802 22-23 24.29663783358102 25.70399725641123 24.064194896416822 25.935170013590923 24-25 25.703679711415106 25.845304779687282 23.917171563210506 24.533843945687103 26-27 24.8910820663288 26.3679838433106 24.22963583939844 24.51129825096216 28-29 25.443610359587954 24.434769906895806 24.73484992823483 25.386769805281407 30-31 24.396029417368442 27.422550775444883 24.16231630021974 24.01910350696694 32-33 23.23286209655908 26.77888706829758 25.579202072933732 24.409048762209608 34-35 26.092354786673273 24.038791296726746 24.547815925516645 25.321037991083333 36-37 24.193435709840085 25.275311511641203 23.89272059850881 26.638532180009904 38-39 23.402113579494213 24.835511692006758 26.20762362026699 25.554751108232036 40-41 23.49483671836299 23.44879269392473 27.080872359613355 25.97549822809892 42-43 25.155597048101715 23.70028833085648 26.410217327795348 24.733897293246454 44-45 22.757497237358535 25.50489654384026 27.01958617536105 24.718020043440156 46-47 24.740248193168974 23.831751959252625 25.496957918937113 25.931041928641292 48-49 24.227413024425562 23.558345717588182 25.724955226155544 26.489286031830712 50-51 22.416771456515388 23.77935703489184 27.302518766909273 26.501352741683498 52-53 22.144000304843196 23.58120895730925 29.183655323959407 25.09113541388815 54-55 21.556224517014062 23.729184925503944 28.058275857689036 26.65631469979296 56-57 23.047415818821527 23.787295659794992 26.197144635394835 26.968143885988642 58-59 21.696261860305604 23.807618539547054 28.782278448856204 25.71384115129114 60-61 23.11918098794599 25.316592361137573 25.62556364236812 25.938663008548314 62-63 20.746802321889014 27.243455397629845 25.63826544221316 26.37147683826798 64-65 21.116424697379617 27.462243899960626 25.11368110861309 26.307650294046663 66-67 21.296155165186907 27.46573689491801 24.499231541109374 26.73887639878571 68-69 21.144368657038704 27.809638125722415 24.197563794789723 26.84842942244916 70-71 21.727698814922075 27.084047809574617 24.322358978267218 26.86589439723609 72-73 21.8613852582911 25.784018595434972 24.322994068259472 28.031602078014455 74-75 21.652123105844097 25.83831878977251 24.70500069859899 27.804557405784397 76 22.139872219893558 25.437259459665434 24.497326271132618 27.925542049308387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 1.0 14 2.0 15 13.0 16 30.0 17 38.0 18 48.0 19 67.0 20 97.5 21 119.0 22 144.0 23 229.0 24 357.0 25 425.0 26 522.5 27 680.5 28 859.5 29 978.0 30 1140.0 31 1490.0 32 1989.0 33 2300.0 34 2572.0 35 3158.0 36 3832.0 37 4192.0 38 4683.0 39 5817.0 40 7147.5 41 8553.5 42 9272.0 43 9556.5 44 9760.5 45 9335.5 46 8991.0 47 8728.5 48 7967.5 49 6991.5 50 6514.0 51 6109.5 52 5146.5 53 4376.0 54 4164.0 55 3868.5 56 3319.5 57 2832.0 58 2598.0 59 2449.5 60 2253.5 61 2153.0 62 2100.0 63 2107.5 64 2130.0 65 2150.5 66 2241.0 67 2326.0 68 2273.0 69 2246.0 70 2236.0 71 2200.0 72 2197.0 73 2183.0 74 2011.5 75 1851.0 76 1749.5 77 1498.0 78 1217.5 79 1087.0 80 953.0 81 699.0 82 503.5 83 428.0 84 357.5 85 201.0 86 97.5 87 80.0 88 60.0 89 32.0 90 19.0 91 9.0 92 4.0 93 2.0 94 1.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 157458.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.61968270903987 #Duplication Level Percentage of deduplicated Percentage of total 1 64.93244955388698 30.920626452768357 2 18.83277096864539 17.93621156117822 3 6.808391459169656 9.726403231337882 4 2.7060188581107214 5.154390377116438 5 1.5563942865525933 3.705750104789849 6 0.9722463023966071 2.7778836261098196 7 0.7095130766460837 2.3650751311460834 8 0.5134634107307184 1.9560771761358584 9 0.46011656286259184 1.971954425942156 >10 2.475293741081074 19.611578960738736 >50 0.02533975273736013 0.7252727711516722 >100 0.006668355983515823 0.713841151291138 >500 0.0 0.0 >1k 0.0013336711967031649 2.4349350302937927 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT 3834 2.4349350302937927 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 385 0.2445096470169823 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCCGT 248 0.1575023180784717 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC 229 0.14543560822568558 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCAACTCGTATGCCGT 161 0.10224948875255625 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.350899922519021E-4 0.0 2 0.0 0.0 0.0 6.350899922519021E-4 0.0 3 0.0 0.0 0.0 6.350899922519021E-4 0.0 4 0.0 0.0 0.0 0.0012701799845038042 0.0 5 0.0 0.0 0.0 0.0025403599690076084 0.0 6 0.0 0.0 0.0 0.0025403599690076084 0.0 7 0.0 0.0 0.0 0.0025403599690076084 0.0 8 0.0 0.0 0.0 0.0025403599690076084 0.0 9 0.0 0.0 0.0 0.0044456299457633144 0.0 10 0.0 0.0 0.0 0.0044456299457633144 0.0 11 0.0 0.0 0.0 0.005080719938015217 0.0 12 0.0 0.0 0.0 0.005080719938015217 0.0 13 0.0 0.0 0.0 0.005080719938015217 0.0 14 0.0 0.0 0.0 0.005080719938015217 0.0 15 0.0 0.0 0.0 0.005080719938015217 0.0 16 0.0 0.0 0.0 0.005080719938015217 0.0 17 0.0 0.0 0.0 0.005715809930267119 0.0 18 0.0 0.0 0.0 0.005715809930267119 0.0 19 0.0 0.0 0.0 0.008891259891526629 0.0 20 0.0 0.0 0.0 0.008891259891526629 0.0 21 0.0 0.0 0.0 0.008891259891526629 0.0 22 0.0 0.0 0.0 0.010161439876030433 0.0 23 0.0 0.0 0.0 0.011431619860534238 0.0 24 0.0 0.0 0.0 0.01206670985278614 0.0 25 0.0 0.0 0.0 0.013971979829541846 0.0 26 0.0 0.0 0.0 0.015877249806297553 0.0 27 0.0 0.0 0.0 0.0311194096203432 0.0 28 0.0 0.0 0.0 0.04953701939564836 0.0 29 0.0 0.0 0.0 0.07113007913221303 0.0 30 0.0 0.0 0.0 0.0895476889075182 0.0 31 0.0 0.0 0.0 0.11050565865183097 0.0 32 0.0 0.0 0.0 0.13844961831091465 0.0 33 0.0 0.0 0.0 0.18671645772205922 0.0 34 0.0 0.0 0.0 0.272453606676066 0.0 35 0.0 0.0 0.0 0.382959265327897 0.0 36 0.0 0.0 0.0 0.6001600426780475 0.0 37 0.0 0.0 0.0 0.8668978394238464 0.0 38 0.0 0.0 0.0 1.2168324251546445 0.0 39 0.0 0.0 0.0 1.550254671086893 0.0 40 0.0 0.0 0.0 1.945280646267576 0.0 41 0.0 0.0 0.0 2.349197881339786 0.0 42 0.0 0.0 0.0 2.756290566373255 0.0 43 0.0 0.0 0.0 3.2700783701050438 0.0 44 0.0 0.0 0.0 3.787676713790344 0.0 45 0.0 0.0 0.0 4.4316579659337725 0.0 46 0.0 0.0 0.0 5.142323667263652 0.0 47 0.0 0.0 0.0 5.8802982382603615 0.0 48 0.0 0.0 0.0 6.597949929505011 0.0 49 0.0 0.0 0.0 7.284482211129317 0.0 50 0.0 0.0 0.0 7.896073873667898 0.0 51 0.0 0.0 0.0 8.536879675850068 0.0 52 0.0 0.0 0.0 9.144025708442886 0.0 53 0.0 0.0 0.0 9.714971611477347 0.0 54 0.0 0.0 0.0 10.319577284101157 0.0 55 0.0 0.0 0.0 10.967369076198096 0.0 56 0.0 0.0 0.0 11.67612950755122 0.0 57 0.0 0.0 0.0 12.373458319043808 0.0 58 0.0 0.0 0.0 13.081583660404679 0.0 59 0.0 0.0 0.0 13.77002121200574 0.0 60 0.0 0.0 0.0 14.40384102427314 0.0 61 0.0 0.0 0.0 14.969706207369585 0.0 62 0.0 0.0 0.0 15.566690800086372 0.0 63 0.0 0.0 0.0 16.14652796301236 0.0 64 0.0 0.0 0.0 16.728905485907354 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCACA 15 0.00222133 70.00001 44 GATCTTA 15 0.00222133 70.00001 1 TATGCCG 535 0.0 57.57009 43 CGTATGC 545 0.0 56.513763 41 TCGTATG 545 0.0 56.513763 40 CTCGTAT 530 0.0 56.132076 39 CTTGAAA 505 0.0 55.445545 57 GTATGCC 560 0.0 55.0 42 CCGTCTT 505 0.0 54.752476 47 TCTCGTA 500 0.0 54.6 38 ATGCCGT 535 0.0 54.299065 44 CGTCTTC 505 0.0 54.059406 48 ATCTCGT 500 0.0 53.899998 37 GCCGTCT 540 0.0 53.148148 46 TGCCGTC 550 0.0 52.818184 45 CATCTCG 505 0.0 52.673267 36 CTCGAAA 20 0.006940956 52.499996 57 GGGCAGT 20 0.006940956 52.499996 37 ATGCAAG 20 0.006940956 52.499996 38 GCTTGAA 535 0.0 52.336445 56 >>END_MODULE