##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781159_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 166847 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.204127134440537 34.0 32.0 34.0 23.0 34.0 2 31.272806823017493 34.0 33.0 34.0 23.0 34.0 3 31.258464341582407 34.0 33.0 34.0 23.0 34.0 4 31.42428692155088 34.0 33.0 34.0 23.0 34.0 5 31.364897181249887 34.0 33.0 34.0 23.0 34.0 6 34.111407457131385 37.0 34.0 38.0 24.0 38.0 7 34.06374702571817 37.0 34.0 38.0 24.0 38.0 8 34.00506452018916 37.0 34.0 38.0 24.0 38.0 9 34.29851900243936 37.0 34.0 38.0 24.0 38.0 10-11 34.13415584337747 37.0 34.0 38.0 24.0 38.0 12-13 34.09228814422795 37.0 34.0 38.0 23.5 38.0 14-15 33.958300119270945 37.0 34.0 38.0 23.0 38.0 16-17 33.933067421050424 37.0 34.0 38.0 23.0 38.0 18-19 33.97658034007204 37.0 34.0 38.0 23.0 38.0 20-21 33.89642606699551 37.0 34.0 38.0 23.0 38.0 22-23 33.97884888550588 37.0 34.0 38.0 23.5 38.0 24-25 33.96380815957134 37.0 34.0 38.0 23.0 38.0 26-27 33.86621875131108 37.0 34.0 38.0 23.0 38.0 28-29 33.98090466115663 37.0 34.0 38.0 23.0 38.0 30-31 34.050327545595664 37.0 34.0 38.0 23.5 38.0 32-33 34.00359910576756 37.0 34.0 38.0 23.5 38.0 34-35 34.03526883911608 37.0 34.0 38.0 23.0 38.0 36-37 33.88786433079408 37.0 34.0 38.0 23.0 38.0 38-39 33.89274305201772 37.0 34.0 38.0 23.0 38.0 40-41 33.89775363057173 37.0 34.0 38.0 23.0 38.0 42-43 33.98573243750262 37.0 34.0 38.0 23.0 38.0 44-45 33.99450094997213 37.0 34.0 38.0 23.5 38.0 46-47 33.977296565116546 37.0 34.0 38.0 23.5 38.0 48-49 33.9554202353054 37.0 34.0 38.0 23.0 38.0 50-51 33.83175304320725 37.0 34.0 38.0 23.0 38.0 52-53 33.90060354696219 37.0 34.0 38.0 23.0 38.0 54-55 33.88095980149478 37.0 34.0 38.0 23.0 38.0 56-57 33.84150449213951 37.0 34.0 38.0 23.0 38.0 58-59 33.85362038274587 37.0 34.0 38.0 23.0 38.0 60-61 33.81803388733391 37.0 34.0 38.0 23.0 38.0 62-63 33.79746714055392 37.0 34.0 38.0 23.0 38.0 64-65 33.8035086036908 37.0 34.0 38.0 23.0 38.0 66-67 33.69095638519122 37.0 34.0 38.0 22.5 38.0 68-69 33.4949204960233 37.0 34.0 38.0 21.5 38.0 70-71 33.64769819055782 37.0 34.0 38.0 22.5 38.0 72-73 33.64730861208173 37.0 34.0 38.0 22.5 38.0 74-75 33.64843838966239 37.0 34.0 38.0 22.5 38.0 76 32.395494075410404 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 26.0 14 86.0 15 272.0 16 614.0 17 1147.0 18 1425.0 19 1560.0 20 1550.0 21 1475.0 22 1506.0 23 1798.0 24 1910.0 25 2431.0 26 2857.0 27 3331.0 28 3829.0 29 4621.0 30 5388.0 31 6441.0 32 7832.0 33 9474.0 34 12196.0 35 16028.0 36 24558.0 37 54488.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.87376458671717 19.200824707666307 9.37146008019323 25.553950625423294 2 22.698040719941023 20.46785378220765 32.258895874663615 24.57520962318771 3 19.205619519679708 22.52902359646862 30.03470245194699 28.23065443190468 4 13.659820074679196 16.706923109195852 38.10137431299334 31.531882503131612 5 13.400900225955517 34.24814350872356 36.372245230660425 15.978711034660497 6 29.903623700897835 37.330232669647465 18.259952291334525 14.506191338120184 7 28.598656253933246 28.729314881298436 23.490982756657296 19.181046108111026 8 25.638459187159494 34.38359694810215 19.815159996883374 20.16278386785498 9 24.665711699940665 15.205547597499505 21.6719509490731 38.456789753486724 10-11 25.340881166577763 24.512577391262656 28.20158588407343 21.94495555808615 12-13 25.216815405730998 22.64499811204277 27.036446564816867 25.101739917409365 14-15 23.360324129292106 24.086738149322436 24.354348594820404 28.198589126565054 16-17 23.73851492684915 26.737070489730115 25.495813529760795 24.02860105365994 18-19 23.147554346197413 26.38854759150599 26.723285405191582 23.74061265710501 20-21 22.953064783903816 26.67054247304417 26.614802783388374 23.76158995966364 22-23 23.37800499859152 26.041523072036053 27.043938458587807 23.536533470784608 24-25 23.05345616043441 26.362475801183123 26.8230774302205 23.76099060816197 26-27 22.333035655420836 26.775428985837323 26.903390531444977 23.988144827296864 28-29 22.978237546974174 26.343895904631186 27.671759156592568 23.006107391802068 30-31 23.477497347869605 26.253993179379908 26.975013035895163 23.293496436855325 32-33 22.851474704369874 26.639076519206217 26.821279375715473 23.688169400708432 34-35 23.74840422662679 25.67951476502424 27.157815243906093 23.414265764442874 36-37 23.670488531409013 25.658537462465613 26.629486895179415 24.041487110945955 38-39 22.846080540854796 26.36487320718982 27.470077376278866 23.318968875676518 40-41 23.131371855652183 25.631266969139393 27.757466421332115 23.47989475387631 42-43 22.73729824330075 25.935737531990387 27.366689242239893 23.960274982468967 44-45 22.310859649858852 25.9366365592429 27.649583151030583 24.102920639867666 46-47 22.559290847303217 25.83834291296817 27.644488663266348 23.957877576462266 48-49 21.93117047354762 25.579123388493652 28.358316301761494 24.131389836197233 50-51 22.162819828945082 25.58901268827129 27.948959226117342 24.299208256666287 52-53 21.80440763094332 25.47423687570049 28.29598374558727 24.425371747768914 54-55 21.252105222149634 25.93124239572782 28.361013383519033 24.45563899860351 56-57 21.425317806133766 25.930942719976986 27.99271188573963 24.65102758814962 58-59 21.567663787781623 25.794290577595042 27.924385814548657 24.713659820074678 60-61 21.348001462417663 25.61268707258746 28.07362433846578 24.965687126529097 62-63 21.030045490778974 25.14339484677579 28.715829472510745 25.11073018993449 64-65 21.725293232722194 25.64055691741536 27.737987497527676 24.896162352334773 66-67 21.763651728829405 25.458953412407777 27.41703476838061 25.360360090382205 68-69 21.249408140392095 25.696596282821986 27.410741577613024 25.643253999172895 70-71 21.955444209365467 25.3291938122951 27.80481518996446 24.91054678837498 72-73 22.3000713228287 24.686689002499296 27.42662439240742 25.586615282264592 74-75 22.09059797299322 25.154482849556782 27.57586291632454 25.17905626112546 76 22.639304272776855 24.814950223857785 27.387366869047693 25.158378634317668 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 2.5 14 8.5 15 13.5 16 24.5 17 35.0 18 41.5 19 69.0 20 120.0 21 150.0 22 184.0 23 292.0 24 468.0 25 570.0 26 677.0 27 858.5 28 1096.5 29 1260.0 30 1401.5 31 1793.5 32 2445.0 33 2846.0 34 3201.5 35 4001.5 36 4972.5 37 5499.0 38 6071.5 39 7390.5 40 8859.5 41 9826.5 42 10071.0 43 10280.5 44 10566.0 45 10578.5 46 10515.0 47 10544.5 48 9864.0 49 8597.5 50 8041.0 51 7561.0 52 6307.0 53 5182.0 54 4831.0 55 4483.0 56 3801.5 57 3059.5 58 2651.0 59 2308.5 60 1899.5 61 1674.5 62 1516.0 63 1514.5 64 1430.0 65 1350.0 66 1302.0 67 1251.0 68 1253.5 69 1247.0 70 1214.0 71 1190.0 72 1149.5 73 1060.0 74 1011.0 75 1011.0 76 907.0 77 740.0 78 602.5 79 528.0 80 475.5 81 378.5 82 266.5 83 199.0 84 167.0 85 109.5 86 66.0 87 48.0 88 34.5 89 17.0 90 9.5 91 4.0 92 2.0 93 2.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 5.993515016751874E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 166847.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.974245865973025 #Duplication Level Percentage of deduplicated Percentage of total 1 73.94913520441158 37.69501399485756 2 12.33641782972169 12.576791911152133 3 4.85367258874296 7.42236899674552 4 2.1810956037108022 4.447188142429891 5 1.3897870639278533 3.5421673749003575 6 0.9206457453938319 2.8157533548700306 7 0.6114122447059931 2.1816394660976823 8 0.5420404707874285 2.2104083381780915 9 0.44680125574668716 2.0497821357291413 >10 2.734894002281038 24.013017914616384 >50 0.034097990570141914 1.0458683704232021 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0023974060067007497 0.0 5 0.0 0.0 0.0 0.0023974060067007497 0.0 6 0.0 0.0 0.0 0.0029967575083759373 0.0 7 0.0 0.0 0.0 0.0029967575083759373 0.0 8 0.0 0.0 0.0 0.0029967575083759373 0.0 9 0.0 0.0 0.0 0.0029967575083759373 0.0 10 0.0 0.0 0.0 0.0029967575083759373 0.0 11 0.0 0.0 0.0 0.0029967575083759373 0.0 12 0.0 0.0 0.0 0.0035961090100511245 0.0 13 0.0 0.0 0.0 0.0035961090100511245 0.0 14 0.0 0.0 0.0 0.004195460511726312 0.0 15 0.0 0.0 0.0 0.004195460511726312 0.0 16 0.0 0.0 0.0 0.004195460511726312 0.0 17 0.0 0.0 0.0 0.004195460511726312 0.0 18 0.0 0.0 0.0 0.004794812013401499 0.0 19 0.0 0.0 0.0 0.005394163515076687 0.0 20 0.0 0.0 0.0 0.006592866518427062 0.0 21 0.0 0.0 0.0 0.008390921023452624 0.0 22 0.0 0.0 0.0 0.01198703003350375 0.0 23 0.0 0.0 0.0 0.014384436040204498 0.0 24 0.0 0.0 0.0 0.01678184204690525 0.0 25 0.0 0.0 0.0 0.01678184204690525 0.0 26 0.0 0.0 0.0 0.01678184204690525 0.0 27 0.0 0.0 0.0 0.02577211457203306 0.0 28 0.0 0.0 0.0 0.03895784760888719 0.0 29 0.0 0.0 0.0 0.047348768632339805 0.0 30 0.0 0.0 0.0 0.0623325561742195 0.0 31 0.0 0.0 0.0 0.08151180422782549 0.0 32 0.0 0.0 0.0 0.1000917007797563 0.0 33 0.0 0.0 0.0 0.13964889989031867 0.0 34 0.0 0.0 0.0 0.182202856509257 0.0 35 0.0 0.0 0.0 0.2721055817605351 0.0 36 0.0 0.0 0.0 0.4105557786475034 0.0 37 0.0 0.0 0.0 0.6161333437220927 0.0 38 0.0 0.0 0.0 0.8396914538469377 0.0 39 0.0 0.0 0.0 1.1129957386108231 0.0 40 0.0 0.0 0.0 1.3958896474015117 0.0 41 0.0 0.0 0.0 1.6979628042458061 0.0 42 0.0 0.0 0.0 2.0635672202676703 0.0 43 0.0 0.0 0.0 2.4771197564235496 0.0 44 0.0 0.0 0.0 2.9937607508675614 0.0 45 0.0 0.0 0.0 3.5541544049338616 0.0 46 0.0 0.0 0.0 4.146913040090622 0.0 47 0.0 0.0 0.0 4.7762321168495685 0.0 48 0.0 0.0 0.0 5.398958327090089 0.0 49 0.0 0.0 0.0 5.94796430262456 0.0 50 0.0 0.0 0.0 6.447224103519991 0.0 51 0.0 0.0 0.0 6.996829430556138 0.0 52 0.0 0.0 0.0 7.486499607424767 0.0 53 0.0 0.0 0.0 7.955791833236439 0.0 54 0.0 0.0 0.0 8.501201699760859 0.0 55 0.0 0.0 0.0 9.109543473961175 0.0 56 0.0 0.0 0.0 9.701103406114584 0.0 57 0.0 0.0 0.0 10.27588149622109 0.0 58 0.0 0.0 0.0 10.829682283768962 0.0 59 0.0 0.0 0.0 11.405059725377141 0.0 60 0.0 0.0 0.0 11.975043003470246 0.0 61 0.0 0.0 0.0 12.461117071328822 0.0 62 0.0 0.0 0.0 12.909431994581862 0.0 63 0.0 0.0 0.0 13.403297631962216 0.0 64 0.0 0.0 0.0 13.946909443981612 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGG 25 2.3850954E-4 55.999996 14 TATCGGC 25 2.3850954E-4 55.999996 15 AAACGCA 20 0.0069416747 52.5 37 TCGTGGG 20 0.0069416747 52.5 2 ACCGTAT 40 7.4454874E-7 52.5 11 TATCGGA 20 0.0069416747 52.5 17 AACCGTA 35 2.0797357E-5 50.0 10 GCCTTAG 35 2.0797357E-5 50.0 40 CGTATCG 30 5.8648805E-4 46.666664 13 CAACCGT 40 4.5778503E-5 43.75 9 ATCGGTT 40 4.5778503E-5 43.75 25 TATCGGT 40 4.5778503E-5 43.75 24 CCGTATC 35 0.0012526856 40.0 12 TTAGGTG 40 0.002413529 35.0 49 GACAAAC 40 0.002413529 35.0 52 CAACCTG 40 0.002413529 35.0 40 CGACAAA 40 0.002413529 35.0 51 CGCTATG 40 0.002413529 35.0 24 TACGACA 40 0.002413529 35.0 49 GCTAGTC 40 0.002413529 35.0 7 >>END_MODULE