##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781159_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 149790 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.26931036784832 34.0 34.0 34.0 32.0 34.0 2 33.30911943387409 34.0 34.0 34.0 33.0 34.0 3 33.353928833700515 34.0 34.0 34.0 33.0 34.0 4 33.43274584418185 34.0 34.0 34.0 34.0 34.0 5 33.41483410107484 34.0 34.0 34.0 34.0 34.0 6 36.82004139128113 38.0 37.0 38.0 34.0 38.0 7 36.75211963415448 38.0 37.0 38.0 34.0 38.0 8 36.54389478603378 38.0 37.0 38.0 34.0 38.0 9 36.520775752720475 38.0 37.0 38.0 34.0 38.0 10-11 36.41244742639695 38.0 37.0 38.0 34.0 38.0 12-13 36.344595767407704 38.0 37.0 38.0 34.0 38.0 14-15 36.36428666800187 38.0 37.0 38.0 34.0 38.0 16-17 36.29294345416917 38.0 37.0 38.0 34.0 38.0 18-19 36.289882502169704 38.0 37.0 38.0 34.0 38.0 20-21 36.2341478069297 38.0 37.0 38.0 34.0 38.0 22-23 36.294786033780625 38.0 37.0 38.0 34.0 38.0 24-25 36.28610054075706 38.0 37.0 38.0 34.0 38.0 26-27 36.07020161559517 38.0 37.0 38.0 32.5 38.0 28-29 36.06761132251819 38.0 37.0 38.0 32.5 38.0 30-31 36.096281460711666 38.0 37.0 38.0 33.0 38.0 32-33 36.04193871419988 38.0 37.0 38.0 32.0 38.0 34-35 36.03856732759196 38.0 37.0 38.0 32.5 38.0 36-37 35.98004205888243 38.0 37.0 38.0 32.0 38.0 38-39 35.80609853795313 38.0 36.5 38.0 31.0 38.0 40-41 35.922231123573 38.0 37.0 38.0 32.0 38.0 42-43 35.97826957740837 38.0 37.0 38.0 32.0 38.0 44-45 35.95161225716002 38.0 37.0 38.0 32.0 38.0 46-47 35.96412978169437 38.0 37.0 38.0 32.0 38.0 48-49 35.945830829828424 38.0 37.0 38.0 32.0 38.0 50-51 35.86301154950264 38.0 36.5 38.0 31.5 38.0 52-53 35.8661659656853 38.0 37.0 38.0 31.5 38.0 54-55 35.8904399492623 38.0 37.0 38.0 32.0 38.0 56-57 35.8322151011416 38.0 36.5 38.0 31.5 38.0 58-59 35.814126443687826 38.0 36.0 38.0 31.0 38.0 60-61 35.80832832632352 38.0 36.0 38.0 31.0 38.0 62-63 35.780976700714334 38.0 36.0 38.0 31.0 38.0 64-65 35.75041391281127 38.0 36.0 38.0 31.0 38.0 66-67 35.69596435009012 38.0 36.0 38.0 31.0 38.0 68-69 35.58799319046665 38.0 36.0 38.0 31.0 38.0 70-71 35.40902263168436 38.0 36.0 38.0 29.5 38.0 72-73 35.23416783496896 38.0 36.0 38.0 27.0 38.0 74-75 35.243631083516924 38.0 36.0 38.0 27.0 38.0 76 34.40927965818813 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 1.0 20 3.0 21 7.0 22 19.0 23 51.0 24 109.0 25 211.0 26 431.0 27 796.0 28 1363.0 29 2049.0 30 3228.0 31 4539.0 32 6437.0 33 8998.0 34 12094.0 35 16801.0 36 25417.0 37 67234.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.45750717671407 18.63609052673743 9.472594966286135 28.43380733026237 2 22.210427932438748 19.789037986514455 33.54896855597837 24.451565525068432 3 19.02797249482609 22.537552573603044 31.030776420321782 27.40369851124908 4 13.587689431871286 18.969891180986714 37.17471126243407 30.267708124707926 5 13.056946391614927 34.279991988784296 37.87435743374057 14.788704185860205 6 29.00727685426264 40.134187863008215 17.178716870285065 13.679818412444089 7 27.630682956138592 29.206222044195208 22.010815141197675 21.15227985846852 8 24.47359636824888 37.2087589291675 18.397089258294947 19.92055544428867 9 23.736564523666466 14.829427865678616 20.73502904065692 40.698978569998 10-11 24.48027238133387 25.696308164764005 28.011883303291274 21.811536150610856 12-13 24.15448294278657 22.82295213298618 27.37666065825489 25.645904265972362 14-15 22.577942452767207 23.895787435743372 23.024901528806996 30.50136858268242 16-17 24.46591895320115 27.834301355230657 24.01862607650711 23.681153615061085 18-19 24.058682155017024 26.32919420522064 25.31243741237733 24.299686227385006 20-21 22.465117831630952 26.16129247613325 25.061085519727616 26.312504172508177 22-23 22.52520194939582 27.156352226450366 25.67427732158355 24.644168502570267 24-25 24.044328726884302 27.47045864209894 25.181587555911612 23.303625075105145 26-27 23.152079578075973 27.678416449696243 25.58448494559049 23.58501902663729 28-29 22.592295880899925 25.876226717404364 26.23973562988183 25.291741771813875 30-31 22.453101008077976 28.701515454970295 25.73502904065692 23.110354496294814 32-33 23.55297416382936 27.852660391214368 25.64356766139262 22.950797783563655 34-35 23.201815875559113 27.090593497563255 27.06422324587756 22.64336738100007 36-37 22.895053074304027 26.57420388543962 27.08057947793578 23.450163562320583 38-39 22.152680419253624 26.30616196007744 27.508845717337604 24.03231190333133 40-41 22.336938380399225 25.068095333466857 28.035249349088726 24.5597169370452 42-43 23.629748314306696 25.085452967487814 27.691100874557712 23.593697843647774 44-45 21.724080379197545 27.03151078176113 27.81327191401295 23.431136925028373 46-47 23.399092062220443 25.120168235529743 26.768142065558447 24.71259763669137 48-49 22.779558047933772 24.970959343080313 27.07857667401028 25.170905934975636 50-51 21.62360638226851 25.122838640763735 28.28526603912144 24.968288937846317 52-53 21.081514119767675 24.861472728486547 30.306095199946594 23.750917951799185 54-55 20.547433072968822 25.21296481741104 29.004606449028643 25.234995660591498 56-57 21.93337338941184 25.234328059282994 27.33994258628747 25.492355965017694 58-59 20.839842446091193 24.849789705587824 29.723613058281593 24.58675479003939 60-61 22.1863942853328 26.425328793644436 27.03985579811736 24.3484211229054 62-63 19.667534548367716 28.093664463582346 27.130315775418918 25.108485212631017 64-65 20.155884905534414 28.8146738767608 26.227051205020363 24.802390012684423 66-67 20.313105013685824 28.379731624273987 26.039455237332266 25.267708124707926 68-69 19.959276320181587 29.08438480539422 25.648574671206354 25.307764203217836 70-71 20.310434608451832 28.18946525135189 25.68796314840777 25.812136991788503 72-73 20.477334935576476 26.87796248080646 25.864877495159888 26.77982508845717 74-75 20.51939381801188 27.17804926897657 25.768409106081847 26.534147806929703 76 20.988717537886377 27.141331197009144 25.5350824487616 26.334868816342883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 3.5 15 12.0 16 22.0 17 26.0 18 40.0 19 71.0 20 107.5 21 127.0 22 159.5 23 257.5 24 402.5 25 482.0 26 555.0 27 736.5 28 1030.0 29 1215.0 30 1313.0 31 1564.0 32 2163.0 33 2609.0 34 2883.0 35 3483.5 36 4288.0 37 4766.0 38 5347.0 39 7058.5 40 8872.0 41 9645.0 42 9735.0 43 9751.0 44 9642.5 45 9356.5 46 9195.0 47 9153.5 48 8450.5 49 7426.5 50 7064.0 51 6491.5 52 5389.0 53 4591.5 54 4324.0 55 3971.5 56 3283.0 57 2625.5 58 2304.0 59 2026.5 60 1568.5 61 1383.5 62 1379.0 63 1271.0 64 1172.0 65 1150.5 66 1158.0 67 1196.0 68 1210.5 69 1136.0 70 1077.5 71 1108.0 72 1089.5 73 1012.0 74 903.0 75 853.0 76 830.0 77 692.0 78 535.5 79 494.0 80 444.5 81 350.5 82 247.0 83 188.0 84 156.0 85 104.0 86 65.0 87 46.0 88 32.0 89 15.5 90 8.5 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 149790.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.537485813472195 #Duplication Level Percentage of deduplicated Percentage of total 1 63.06433726032241 26.19534014286668 2 17.853067390989892 14.831430669604112 3 6.901428823992671 8.60004005607851 4 3.1871293334833415 5.2954135790106145 5 1.7470547581928348 3.628413111689699 6 1.2391713142287726 3.0883236531143603 7 0.9080827399990357 2.6403631751118235 8 0.7537890355036243 2.5048401094866146 9 0.5528857744418908 2.066893651111556 >10 3.719121168774812 26.57587288871086 >50 0.06428904353975473 1.6576540490019358 >100 0.008036130442469341 0.6882969490620202 >500 0.0 0.0 >1k 0.0016072260884938683 2.2271179651512116 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT 3336 2.2271179651512116 No Hit TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG 338 0.22564924227251484 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC 244 0.16289471927364976 No Hit CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT 215 0.1435342813271914 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.676013084985647E-4 0.0 2 0.0 0.0 0.0 6.676013084985647E-4 0.0 3 0.0 0.0 0.0 6.676013084985647E-4 0.0 4 0.0 0.0 0.0 0.0026704052339942587 0.0 5 0.0 0.0 0.0 0.0026704052339942587 0.0 6 0.0 0.0 0.0 0.0033380065424928234 0.0 7 0.0 0.0 0.0 0.0033380065424928234 0.0 8 0.0 0.0 0.0 0.0033380065424928234 0.0 9 0.0 0.0 0.0 0.004005607850991388 0.0 10 0.0 0.0 0.0 0.004005607850991388 0.0 11 0.0 0.0 0.0 0.004005607850991388 0.0 12 0.0 0.0 0.0 0.004673209159489953 0.0 13 0.0 0.0 0.0 0.004673209159489953 0.0 14 0.0 0.0 0.0 0.005340810467988517 0.0 15 0.0 0.0 0.0 0.005340810467988517 0.0 16 0.0 0.0 0.0 0.005340810467988517 0.0 17 0.0 0.0 0.0 0.005340810467988517 0.0 18 0.0 0.0 0.0 0.006008411776487082 0.0 19 0.0 0.0 0.0 0.006008411776487082 0.0 20 0.0 0.0 0.0 0.008011215701982776 0.0 21 0.0 0.0 0.0 0.008011215701982776 0.0 22 0.0 0.0 0.0 0.010681620935977035 0.0 23 0.0 0.0 0.0 0.012016823552974164 0.0 24 0.0 0.0 0.0 0.012684424861472728 0.0 25 0.0 0.0 0.0 0.013352026169971293 0.0 26 0.0 0.0 0.0 0.014019627478469857 0.0 27 0.0 0.0 0.0 0.025368849722945456 0.0 28 0.0 0.0 0.0 0.04005607850991388 0.0 29 0.0 0.0 0.0 0.051405300754389475 0.0 30 0.0 0.0 0.0 0.06742773215835503 0.0 31 0.0 0.0 0.0 0.08812337272181053 0.0 32 0.0 0.0 0.0 0.10881901328526604 0.0 33 0.0 0.0 0.0 0.15021029441217704 0.0 34 0.0 0.0 0.0 0.2022831964750651 0.0 35 0.0 0.0 0.0 0.30108819013285265 0.0 36 0.0 0.0 0.0 0.4573068963215168 0.0 37 0.0 0.0 0.0 0.6869617464450231 0.0 38 0.0 0.0 0.0 0.924627812270512 0.0 39 0.0 0.0 0.0 1.207023165765405 0.0 40 0.0 0.0 0.0 1.4987649375792778 0.0 41 0.0 0.0 0.0 1.8232191735095802 0.0 42 0.0 0.0 0.0 2.2130983376727418 0.0 43 0.0 0.0 0.0 2.653047599973296 0.0 44 0.0 0.0 0.0 3.1904666533146404 0.0 45 0.0 0.0 0.0 3.7873022231123574 0.0 46 0.0 0.0 0.0 4.391481407303559 0.0 47 0.0 0.0 0.0 5.038387075238668 0.0 48 0.0 0.0 0.0 5.687963148407771 0.0 49 0.0 0.0 0.0 6.256759463248548 0.0 50 0.0 0.0 0.0 6.775485679951933 0.0 51 0.0 0.0 0.0 7.352293210494692 0.0 52 0.0 0.0 0.0 7.856999799719607 0.0 53 0.0 0.0 0.0 8.345016356232058 0.0 54 0.0 0.0 0.0 8.918485880232325 0.0 55 0.0 0.0 0.0 9.555377528539957 0.0 56 0.0 0.0 0.0 10.163562320582148 0.0 57 0.0 0.0 0.0 10.791775151879298 0.0 58 0.0 0.0 0.0 11.37192068896455 0.0 59 0.0 0.0 0.0 11.99479270979371 0.0 60 0.0 0.0 0.0 12.587622671740437 0.0 61 0.0 0.0 0.0 13.096334868816342 0.0 62 0.0 0.0 0.0 13.589024634488284 0.0 63 0.0 0.0 0.0 14.104412844649175 0.0 64 0.0 0.0 0.0 14.681887976500434 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTAACG 15 0.0022211177 70.0 62 TATCGTC 20 7.906156E-5 70.0 13 CGTCACA 20 7.906156E-5 70.0 16 GTTATCG 20 7.906156E-5 70.0 11 TATGCCG 460 0.0 56.304344 43 CGTTATC 25 2.3843044E-4 56.000004 10 ATCGTCA 25 2.3843044E-4 56.000004 14 TCGTCAC 25 2.3843044E-4 56.000004 15 CGTATGC 460 0.0 55.543476 41 CCGTCTT 430 0.0 55.34884 47 TCGTATG 465 0.0 54.946236 40 CTCGTAT 440 0.0 54.88636 39 GCCGTCT 440 0.0 54.090908 46 CGTCTTC 435 0.0 53.908047 48 GTATGCC 475 0.0 53.78947 42 ATCTCGT 415 0.0 53.13253 37 ATGCCGT 475 0.0 53.052628 44 TAGCGAG 20 0.006940295 52.5 28 TAACGAC 20 0.006940295 52.5 64 CGTGTCC 20 0.006940295 52.5 3 >>END_MODULE