##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781158_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 210761 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.250060495063128 34.0 32.0 34.0 23.0 34.0 2 31.407143636631066 34.0 33.0 34.0 23.0 34.0 3 31.40977220643288 34.0 33.0 34.0 23.0 34.0 4 31.6143309246018 34.0 34.0 34.0 23.0 34.0 5 31.601833356266102 34.0 34.0 34.0 23.0 34.0 6 34.38062544778209 37.0 34.0 38.0 25.0 38.0 7 34.265495039404826 37.0 34.0 38.0 24.0 38.0 8 33.99329572359213 37.0 34.0 38.0 24.0 38.0 9 34.37030570171901 37.0 34.0 38.0 25.0 38.0 10-11 34.25838271786526 37.0 34.0 38.0 24.0 38.0 12-13 34.21740027804006 37.0 34.0 38.0 24.0 38.0 14-15 34.11727739002947 37.0 34.0 38.0 24.0 38.0 16-17 34.110836445072856 37.0 34.0 38.0 23.5 38.0 18-19 34.14201156760501 37.0 34.0 38.0 24.0 38.0 20-21 34.06958830144097 37.0 34.0 38.0 23.5 38.0 22-23 34.143800323589275 37.0 34.0 38.0 24.0 38.0 24-25 34.12245386954892 37.0 34.0 38.0 24.0 38.0 26-27 34.06030764705045 37.0 34.0 38.0 23.5 38.0 28-29 34.137731838433105 37.0 34.0 38.0 24.0 38.0 30-31 34.20809115538454 37.0 34.0 38.0 24.0 38.0 32-33 34.165163384117555 37.0 34.0 38.0 24.0 38.0 34-35 34.18974335859101 37.0 34.0 38.0 24.0 38.0 36-37 34.03008621139585 37.0 34.0 38.0 23.5 38.0 38-39 34.04960832412068 37.0 34.0 38.0 24.0 38.0 40-41 34.047150563908886 37.0 34.0 38.0 24.0 38.0 42-43 34.11441158468597 37.0 34.0 38.0 24.0 38.0 44-45 34.161277465944835 37.0 34.0 38.0 24.0 38.0 46-47 34.14524271568269 37.0 34.0 38.0 24.0 38.0 48-49 34.111023861150784 37.0 34.0 38.0 24.0 38.0 50-51 33.99467406208929 37.0 34.0 38.0 23.5 38.0 52-53 34.07857715611522 37.0 34.0 38.0 24.0 38.0 54-55 34.049703218337356 37.0 34.0 38.0 24.0 38.0 56-57 33.998567097328255 37.0 34.0 38.0 23.5 38.0 58-59 34.01013707469598 37.0 34.0 38.0 24.0 38.0 60-61 33.97840207628546 37.0 34.0 38.0 23.5 38.0 62-63 33.95217094244191 37.0 34.0 38.0 23.5 38.0 64-65 33.973386916934345 37.0 34.0 38.0 23.5 38.0 66-67 33.84477441272342 37.0 34.0 38.0 23.0 38.0 68-69 33.61520395139518 37.0 34.0 38.0 22.5 38.0 70-71 33.79898795317919 37.0 34.0 38.0 23.0 38.0 72-73 33.78344902519916 37.0 34.0 38.0 23.0 38.0 74-75 33.76741664729243 37.0 34.0 38.0 23.0 38.0 76 32.38059697951709 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 26.0 14 93.0 15 295.0 16 659.0 17 1111.0 18 1518.0 19 1718.0 20 1738.0 21 1669.0 22 1740.0 23 2022.0 24 2326.0 25 2846.0 26 3467.0 27 4066.0 28 4779.0 29 5635.0 30 6764.0 31 8451.0 32 10188.0 33 12454.0 34 15858.0 35 21258.0 36 32531.0 37 67546.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.22136448394153 18.39382048861032 10.110029844231143 26.27478518321701 2 22.71909888451848 19.574779015092926 32.599484724403474 25.10663737598512 3 20.117099463373204 21.83895502488601 28.44027120767125 29.60367430406954 4 14.267819947713287 15.72397170254459 37.091776941654295 32.91643140808783 5 13.976494702530355 34.12490925740531 35.68639359274249 16.212202447321847 6 30.992925636147106 36.099657906348895 17.979132761753835 14.928283695750164 7 30.421662451781877 28.16128221065567 22.086628930399836 19.330426407162616 8 26.504903658646523 33.44641560820076 19.88982781444385 20.15885291870887 9 24.883161495722643 15.985879740559211 21.719862782962693 37.411095980755455 10-11 25.807668401649263 24.206091259768172 27.228472060770258 22.75776827781231 12-13 25.48194400292274 22.654570817181547 26.801210850204733 25.062274329690975 14-15 23.59615868210912 23.882501980916775 23.847153885206467 28.67418545176764 16-17 24.05592116188479 26.530999568231312 25.23972651486755 24.173352755016346 18-19 23.636014253111345 26.03494005057862 26.389607185390084 23.939438510919953 20-21 23.388814818680874 26.46552255872766 26.32982382888675 23.815838793704717 22-23 23.734467002908506 25.67837503143371 26.82113863570585 23.766019329951938 24-25 23.34682412780353 26.19151550808736 26.46172679006078 23.99993357404833 26-27 22.634643031680433 26.48568757977045 26.677848368531183 24.201821020017935 28-29 23.48157391547772 25.90066473398779 27.443881932615614 23.173879417918876 30-31 23.474694084769006 26.061273195705088 26.86834850850015 23.59568421102576 32-33 23.08942356508083 26.38059223480625 26.68259307936478 23.847391120748146 34-35 23.92022243204388 25.490958953506578 26.81473327608049 23.77408533836905 36-37 23.845967707498065 25.554063607593434 26.399333842598967 24.200634842309533 38-39 23.13093978487481 26.253671220007497 27.14045767480701 23.47493132031068 40-41 23.507195353979153 25.12585345486119 27.644820436418506 23.72213075474115 42-43 23.124534425249454 25.290257685245372 27.388606051404196 24.196601838100975 44-45 22.37154881595741 24.932269252850386 27.985016203187495 24.71116572800471 46-47 22.67188901172418 24.663718619668725 28.152267260071834 24.51212510853526 48-49 21.954488733684123 24.558860510246202 28.972390527659293 24.51426022841038 50-51 21.910600158473343 24.75434259659045 28.542282490593614 24.7927747543426 52-53 21.381090429443777 24.659448379918487 29.266562599342382 24.692898591295354 54-55 20.824298613121023 25.252774469659943 29.078672050331893 24.844254866887137 56-57 20.58990989794127 25.42666812171132 28.91806358861459 25.06535839173282 58-59 21.126536693221233 25.2769724949113 28.261158373702916 25.335332438164553 60-61 20.822875199870943 25.021707052063714 28.387842152959987 25.767575595105356 62-63 20.45800693676724 24.695270946712153 28.88271549290429 25.964006623616324 64-65 21.236613984560712 24.819819606094107 27.991421562812857 25.952144846532327 66-67 21.274808906771177 24.410825532237936 27.67400040804513 26.640365152945755 68-69 21.148836834139143 24.70594654608775 27.305573611816225 26.83964300795688 70-71 21.781069552716108 24.86774118551345 27.103211694763264 26.24797756700718 72-73 21.751889581089483 24.611052329415784 26.68022072394798 26.956837365546754 74-75 21.59602583020578 25.12846304581967 26.584140329567614 26.691370794406932 76 22.32481341424647 24.869401834305208 25.943604367031853 26.862180384416472 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 0.5 3 0.0 4 0.0 5 0.0 6 0.0 7 1.0 8 2.0 9 1.0 10 1.0 11 2.5 12 3.0 13 4.0 14 7.5 15 10.0 16 20.0 17 30.0 18 48.5 19 76.5 20 128.5 21 171.0 22 210.0 23 316.0 24 504.0 25 625.0 26 739.0 27 934.5 28 1228.5 29 1441.0 30 1681.0 31 2182.0 32 2931.0 33 3419.0 34 3909.5 35 4978.0 36 6125.5 37 6695.0 38 7297.5 39 8767.5 40 10496.0 41 12023.5 42 12690.0 43 12926.5 44 13406.5 45 13566.5 46 13483.0 47 13323.0 48 12357.5 49 11021.0 50 10490.0 51 9620.0 52 7915.5 53 6486.0 54 5891.0 55 5386.5 56 4454.0 57 3634.0 58 3242.0 59 2950.0 60 2596.5 61 2342.5 62 2150.0 63 2118.0 64 1991.0 65 1908.0 66 1908.0 67 1896.0 68 1904.5 69 1885.0 70 1834.5 71 1812.0 72 1748.5 73 1657.0 74 1532.0 75 1435.0 76 1320.0 77 1102.0 78 912.5 79 826.0 80 724.0 81 533.5 82 375.5 83 306.0 84 253.0 85 173.5 86 113.5 87 80.0 88 61.5 89 40.0 90 24.5 91 12.0 92 12.0 93 7.5 94 2.0 95 3.0 96 5.0 97 2.5 98 0.0 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 210761.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.837764478459334 #Duplication Level Percentage of deduplicated Percentage of total 1 70.84341423210662 34.598339791175576 2 14.298048160393629 13.965694171179454 3 5.567549290454907 8.157199829083503 4 2.4726804570113474 4.830407431600375 5 1.346682073556878 3.2884470967867028 6 0.8811347660958787 2.581959130822373 7 0.7372758302724608 2.52048323481549 8 0.5644455758329849 2.205300807475174 9 0.41459276734853456 1.8223005533616374 >10 2.8232268923931945 24.451516604518982 >50 0.04895191710085915 1.4641831217593093 >100 0.0019980374326881286 0.114168227421419 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.489421667196493E-4 0.0 2 0.0 0.0 0.0 9.489421667196493E-4 0.0 3 0.0 0.0 0.0 9.489421667196493E-4 0.0 4 0.0 0.0 0.0 0.001423413250079474 0.0 5 0.0 0.0 0.0 0.001423413250079474 0.0 6 0.0 0.0 0.0 0.001423413250079474 0.0 7 0.0 0.0 0.0 0.001423413250079474 0.0 8 0.0 0.0 0.0 0.001423413250079474 0.0 9 0.0 0.0 0.0 0.001423413250079474 0.0 10 0.0 0.0 0.0 0.0018978843334392986 0.0 11 0.0 0.0 0.0 0.002372355416799123 0.0 12 0.0 0.0 0.0 0.002372355416799123 0.0 13 0.0 4.7447108335982465E-4 0.0 0.002846826500158948 0.0 14 0.0 4.7447108335982465E-4 0.0 0.002846826500158948 0.0 15 0.0 4.7447108335982465E-4 0.0 0.002846826500158948 0.0 16 0.0 4.7447108335982465E-4 0.0 0.002846826500158948 0.0 17 0.0 4.7447108335982465E-4 0.0 0.002846826500158948 0.0 18 0.0 4.7447108335982465E-4 0.0 0.0033212975835187723 0.0 19 0.0 4.7447108335982465E-4 0.0 0.003795768666878597 0.0018978843334392986 20 0.0 4.7447108335982465E-4 0.0 0.004270239750238422 0.0018978843334392986 21 0.0 4.7447108335982465E-4 0.0 0.004270239750238422 0.0018978843334392986 22 0.0 4.7447108335982465E-4 0.0 0.004270239750238422 0.0018978843334392986 23 0.0 4.7447108335982465E-4 0.0 0.005219181916958071 0.0018978843334392986 24 0.0 4.7447108335982465E-4 0.0 0.005693653000317896 0.0018978843334392986 25 0.0 4.7447108335982465E-4 0.0 0.007591537333757194 0.0018978843334392986 26 0.0 4.7447108335982465E-4 0.0 0.009014950583836667 0.0018978843334392986 27 0.0 4.7447108335982465E-4 0.0 0.018029901167673335 0.0018978843334392986 28 0.0 4.7447108335982465E-4 0.0 0.03511086016862702 0.0018978843334392986 29 0.0 4.7447108335982465E-4 0.0 0.05598758783645931 0.0018978843334392986 30 0.0 4.7447108335982465E-4 0.0 0.07496643117085229 0.0018978843334392986 31 0.0 9.489421667196493E-4 0.0 0.09489421667196493 0.0018978843334392986 32 0.0 9.489421667196493E-4 0.0 0.11387306000635791 0.0018978843334392986 33 0.0 9.489421667196493E-4 0.0 0.15277968884186352 0.0018978843334392986 34 0.0 9.489421667196493E-4 0.0 0.2097162188450425 0.0018978843334392986 35 0.0 9.489421667196493E-4 0.0 0.2875294765160537 0.0018978843334392986 36 0.0 9.489421667196493E-4 0.0 0.43176868585744044 0.0018978843334392986 37 0.0 9.489421667196493E-4 0.0 0.6690042275373528 0.0018978843334392986 38 0.0 9.489421667196493E-4 0.0 0.9940169196388327 0.0018978843334392986 39 0.0 9.489421667196493E-4 0.0 1.4115514729954783 0.0018978843334392986 40 0.0 9.489421667196493E-4 0.0 1.8988332756060182 0.0018978843334392986 41 0.0 9.489421667196493E-4 0.0 2.4492197323034146 0.0018978843334392986 42 0.0 9.489421667196493E-4 0.0 3.0427830575865555 0.0018978843334392986 43 0.0 9.489421667196493E-4 0.0 3.7563875669597317 0.0018978843334392986 44 0.0 9.489421667196493E-4 0.0 4.548754276170639 0.0018978843334392986 45 0.0 9.489421667196493E-4 0.0 5.4848857236395725 0.0018978843334392986 46 0.0 9.489421667196493E-4 0.0 6.4067830386077125 0.0018978843334392986 47 0.0 9.489421667196493E-4 0.0 7.30543127049122 0.0018978843334392986 48 0.0 9.489421667196493E-4 0.0 8.251052139627351 0.0018978843334392986 49 0.0 9.489421667196493E-4 0.0 9.161087677511494 0.0018978843334392986 50 0.0 9.489421667196493E-4 0.0 9.979550296307192 0.0018978843334392986 51 0.0 9.489421667196493E-4 0.0 10.798961857269608 0.0018978843334392986 52 0.0 9.489421667196493E-4 0.0 11.626913897732504 0.0018978843334392986 53 0.0 9.489421667196493E-4 0.0 12.439208392444522 0.0018978843334392986 54 0.0 9.489421667196493E-4 0.0 13.233472985988868 0.0018978843334392986 55 0.0 9.489421667196493E-4 0.0 14.166283135874284 0.0018978843334392986 56 0.0 9.489421667196493E-4 0.0 15.055916417173956 0.0018978843334392986 57 0.0 9.489421667196493E-4 0.0 15.872955622719573 0.0018978843334392986 58 0.0 9.489421667196493E-4 0.0 16.70043319209911 0.0018978843334392986 59 0.0 9.489421667196493E-4 0.0 17.51130427356105 0.0018978843334392986 60 0.0 9.489421667196493E-4 0.0 18.368199050108892 0.0018978843334392986 61 0.0 9.489421667196493E-4 0.0 19.198048974905223 0.0018978843334392986 62 0.0 9.489421667196493E-4 0.0 19.986145444365892 0.0018978843334392986 63 0.0 9.489421667196493E-4 0.0 20.737707640407855 0.0018978843334392986 64 0.0 9.489421667196493E-4 0.0 21.50635079545077 0.0018978843334392986 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACCAA 20 0.006944202 52.5 12 TTAAGCA 20 0.006944202 52.5 14 CATCGTT 20 0.006944202 52.5 32 ACGGTTA 20 0.006944202 52.5 45 CGGTATA 35 2.0816227E-5 50.0 2 GCCGTTA 30 5.86842E-4 46.666668 62 TCGGTCA 30 5.86842E-4 46.666668 29 CTTCGGA 35 0.0012534374 40.0 66 ATTCCAG 35 0.0012534374 40.0 33 TTCGGTC 35 0.0012534374 40.0 28 TCGTTCC 50 1.7057569E-4 35.000004 62 GCGGTAT 50 1.7057569E-4 35.000004 1 CGGCAAA 60 1.2118468E-5 35.000004 34 TTCCCTA 50 1.7057569E-4 35.000004 26 AGCGTTA 40 0.0024149683 35.0 10 CGGAATA 40 0.0024149683 35.0 69 GCTTGGG 40 0.0024149683 35.0 1 GAGCGTT 40 0.0024149683 35.0 9 TTCGGAA 40 0.0024149683 35.0 67 GCTTTTA 65 2.0959276E-5 32.307693 27 >>END_MODULE