SRR1781158_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781158_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	191355
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	3490	1.8238352799770061	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	350	0.18290611690313816	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAATACAGACCTCGTATGCCGT	284	0.14841524914426069	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC	251	0.1311698152648219	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAATACAGAACTCGTATGCCGT	212	0.11078884795275795	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	520	0.0	56.53846	40
CGTATGC	525	0.0	56.0	41
CTCGTAT	505	0.0	55.445545	39
TATGCCG	525	0.0	55.333332	43
CCGTCTT	505	0.0	54.752476	47
GTATGCC	540	0.0	54.444447	42
GCCGTCT	525	0.0	53.333332	46
CGTCTTC	515	0.0	53.009712	48
ATGCCGT	535	0.0	52.990654	44
TCTTCTG	500	0.0	52.500004	50
TAGTTTC	20	0.0069432296	52.5	35
AGCGCTG	20	0.0069432296	52.5	61
TCTCGTA	415	0.0	52.289154	38
ATCTCGT	420	0.0	51.666668	37
CTTGAAA	545	0.0	51.37615	57
TGCCGTC	550	0.0	50.90909	45
ACAGATC	425	0.0	50.235294	33
AGATCTC	435	0.0	49.080463	35
CAGATCT	435	0.0	49.080463	34
ACTCGTA	50	6.165101E-8	48.999996	38