##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781157_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 257809 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.21868902947531 34.0 34.0 34.0 32.0 34.0 2 33.235127555671056 34.0 34.0 34.0 32.0 34.0 3 33.32155588051619 34.0 34.0 34.0 33.0 34.0 4 33.39223611278117 34.0 34.0 34.0 33.0 34.0 5 33.3745059326866 34.0 34.0 34.0 33.0 34.0 6 36.79546873848469 38.0 37.0 38.0 34.0 38.0 7 36.70309802993689 38.0 37.0 38.0 34.0 38.0 8 36.469611223812976 38.0 37.0 38.0 34.0 38.0 9 36.418488105535495 38.0 37.0 38.0 34.0 38.0 10-11 36.330952371717046 38.0 37.0 38.0 34.0 38.0 12-13 36.27779286215764 38.0 37.0 38.0 34.0 38.0 14-15 36.27392565814227 38.0 37.0 38.0 34.0 38.0 16-17 36.21931352280177 38.0 37.0 38.0 34.0 38.0 18-19 36.22894080501456 38.0 37.0 38.0 34.0 38.0 20-21 36.16812640365542 38.0 37.0 38.0 33.0 38.0 22-23 36.23016651862425 38.0 37.0 38.0 34.0 38.0 24-25 36.22570973084726 38.0 37.0 38.0 34.0 38.0 26-27 35.9979442145154 38.0 37.0 38.0 32.0 38.0 28-29 35.99841743306091 38.0 37.0 38.0 32.0 38.0 30-31 36.02474506320571 38.0 37.0 38.0 32.0 38.0 32-33 35.96513504183329 38.0 37.0 38.0 32.0 38.0 34-35 35.97814661241462 38.0 37.0 38.0 32.0 38.0 36-37 35.933516673196046 38.0 37.0 38.0 32.0 38.0 38-39 35.872376449231794 38.0 37.0 38.0 32.0 38.0 40-41 35.91529388035328 38.0 37.0 38.0 32.0 38.0 42-43 35.933625280731086 38.0 37.0 38.0 32.0 38.0 44-45 35.90837014999477 38.0 36.5 38.0 32.0 38.0 46-47 35.93682338475383 38.0 37.0 38.0 32.0 38.0 48-49 35.90478610133859 38.0 37.0 38.0 32.0 38.0 50-51 35.81166095830635 38.0 36.0 38.0 31.0 38.0 52-53 35.841818943481414 38.0 36.0 38.0 31.0 38.0 54-55 35.846064334449146 38.0 36.0 38.0 31.0 38.0 56-57 35.814106567264915 38.0 36.0 38.0 31.0 38.0 58-59 35.80534426649186 38.0 36.0 38.0 31.0 38.0 60-61 35.79279815677498 38.0 36.0 38.0 31.0 38.0 62-63 35.776978305644874 38.0 36.0 38.0 31.0 38.0 64-65 35.73838966056266 38.0 36.0 38.0 31.0 38.0 66-67 35.70646292410272 38.0 36.0 38.0 31.0 38.0 68-69 35.639925293531256 38.0 36.0 38.0 31.0 38.0 70-71 35.55487783591729 38.0 36.0 38.0 31.0 38.0 72-73 35.49738178263753 38.0 36.0 38.0 31.0 38.0 74-75 35.493085966742825 38.0 36.0 38.0 31.0 38.0 76 34.60214344728074 37.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 5.0 21 9.0 22 40.0 23 95.0 24 200.0 25 366.0 26 710.0 27 1316.0 28 2171.0 29 3477.0 30 5362.0 31 7912.0 32 11315.0 33 15931.0 34 21393.0 35 29816.0 36 44789.0 37 112902.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.616681341613365 17.817066122594635 9.176948826456796 26.389303709335206 2 24.401785818183228 20.49889646986723 30.808466733124135 24.29085097882541 3 20.23009282065405 22.17377981373808 29.7107548611569 27.885372504450967 4 13.88004297755315 17.708070703505307 37.43740521083438 30.974481108107167 5 13.289683447823778 33.92744240891513 37.11546144626448 15.667412696996614 6 29.27748837317549 38.98234739671617 18.304248494040163 13.435915736068175 7 28.869434348684493 30.0039952057531 21.463951995469515 19.662618450092896 8 25.426575488055107 35.78657067829285 18.927578168333923 19.859275665318123 9 24.84125845102382 16.023490258291993 20.166867719901166 38.96838357078302 10-11 24.63994662715421 25.26191870726003 28.006392329204953 22.09174233638081 12-13 25.04509152124247 23.150471860951324 26.788242458564287 25.016194159241916 14-15 23.121380556923924 23.74277081094919 23.668491014665896 29.467357617460987 16-17 24.06626611173388 27.62898114495615 24.58253978720681 23.72221295610316 18-19 23.4633003502593 26.802788110577985 25.82861730971378 23.905294229448934 20-21 22.74416331470197 26.604385417111114 25.955261453246397 24.696189814940517 22-23 23.073864760345838 26.980245065145127 26.045444495731335 23.9004456787777 24-25 23.363226264405043 27.2065754104783 26.178876610203677 23.25132171491298 26-27 22.81107331396499 27.473245697396138 26.29175086982999 23.423930118808887 28-29 22.57252462094031 26.89238932698238 27.296952394990086 23.238133657087225 30-31 23.632999623752468 27.03183364428705 26.39395831797959 22.941208413980892 32-33 22.28180552269316 26.931565616405944 26.18294939276751 24.603679468133386 34-35 23.904518461341535 26.581888141996597 26.595658025902896 22.917935370758975 36-37 23.27983119285983 26.5952701418492 25.93315206218557 24.1917466031054 38-39 22.434825781877283 26.797745617879905 27.27639454014406 23.491034060098755 40-41 22.61577369292771 25.597438413709373 27.887893750800014 23.898894142562906 42-43 23.334134960377646 25.85518736739214 27.47537905969148 23.33529861253874 44-45 22.093681756649303 26.85185544337087 27.541707232873954 23.51275556710588 46-47 23.0988832818094 25.448490937089087 27.101070947872262 24.35155483322925 48-49 22.539748418402773 25.346477430966335 27.566143928256963 24.54763022237393 50-51 21.863860454832842 25.40078119848415 28.148745776912364 24.586612569770644 52-53 21.57546866090788 25.113553056720285 29.307937271390838 24.003041010980997 54-55 20.833834350236028 25.699257977805274 28.79670608861599 24.670201583342706 56-57 21.437381937791155 25.55205597942663 27.981761691795086 25.028800390987126 58-59 21.017885333716045 25.48281867584142 28.75908133540722 24.740214655035317 60-61 21.260700751331413 25.87749070047981 27.848329577322744 25.013478970866025 62-63 19.840851172767437 26.713768720254144 27.9778828512581 25.46749725572032 64-65 20.462435368819555 27.039591325361023 27.038427673199926 25.459545632619495 66-67 20.4347016589801 26.87105570402895 26.701744314589483 25.99249832240147 68-69 20.35169447148858 27.301413061607626 26.190707073841484 26.1561853930623 70-71 20.741905829509445 26.88948019657964 26.15114290036422 26.217471073546694 72-73 20.528957484028872 26.001807539690237 26.048741510187774 27.420493466093117 74-75 20.58190365735874 26.362345767603145 25.831332498089672 27.224418076948435 76 21.158299361154963 26.080935886644763 25.536734559305536 27.224030192894737 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 0.0 14 5.0 15 11.5 16 26.0 17 39.0 18 41.0 19 69.5 20 118.5 21 141.0 22 174.5 23 313.5 24 540.5 25 662.0 26 786.5 27 1002.5 28 1446.0 29 1798.0 30 1958.0 31 2332.0 32 3384.0 33 4222.0 34 4633.0 35 5694.5 36 7148.5 37 7952.0 38 8890.0 39 10891.5 40 13178.5 41 15173.0 42 15944.0 43 16567.0 44 17463.5 45 17867.5 46 17998.0 47 17352.5 48 15726.5 49 14187.0 50 13628.0 51 12556.5 52 10229.0 53 8508.5 54 8044.0 55 7409.5 56 6139.0 57 4906.0 58 4309.0 59 3804.5 60 3083.0 61 2631.0 62 2396.0 63 2270.0 64 2075.5 65 1895.5 66 1767.5 67 1751.0 68 1706.5 69 1637.0 70 1574.0 71 1536.0 72 1465.5 73 1318.0 74 1164.0 75 1087.0 76 1043.5 77 929.5 78 761.0 79 663.0 80 587.0 81 461.0 82 331.0 83 251.0 84 212.0 85 144.0 86 97.5 87 80.0 88 63.5 89 31.0 90 13.0 91 7.0 92 3.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 257809.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.34621754865036 #Duplication Level Percentage of deduplicated Percentage of total 1 63.32186931013555 24.28154176153664 2 17.817115112279993 13.664379443696689 3 6.641715557353834 7.64054008975637 4 2.975925551284645 4.56461954392593 5 1.5820352012947605 3.033253299923587 6 1.1288691078292536 2.5972716235662836 7 0.8001213837750354 2.147714005329527 8 0.6564839166498078 2.0138940068034863 9 0.6119765324701598 2.112028672389249 >10 4.239328343111471 30.82630939959427 >50 0.20837548047744286 5.219367826569282 >100 0.01517297187942545 0.8192111214115876 >500 0.0 0.0 >1k 0.0010115314586283633 1.0798692054970926 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT 2784 1.0798692054970926 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG 293 0.11365002773370983 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.878840536986684E-4 0.0 2 0.0 0.0 0.0 3.878840536986684E-4 0.0 3 0.0 0.0 0.0 3.878840536986684E-4 0.0 4 0.0 0.0 0.0 7.757681073973368E-4 0.0 5 0.0 0.0 0.0 7.757681073973368E-4 0.0 6 0.0 0.0 0.0 7.757681073973368E-4 0.0 7 0.0 0.0 0.0 0.0011636521610960053 0.0 8 0.0 0.0 0.0 0.0015515362147946736 0.0 9 0.0 0.0 0.0 0.001939420268493342 0.0 10 0.0 0.0 0.0 0.0023273043221920106 0.0 11 0.0 0.0 0.0 0.0023273043221920106 0.0 12 0.0 0.0 0.0 0.0023273043221920106 0.0 13 0.0 0.0 0.0 0.0023273043221920106 0.0 14 0.0 0.0 0.0 0.0023273043221920106 0.0 15 0.0 0.0 0.0 0.0027151883758906787 0.0 16 0.0 0.0 0.0 0.0031030724295893473 0.0 17 0.0 0.0 0.0 0.0034909564832880154 0.0 18 0.0 0.0 0.0 0.0034909564832880154 0.0 19 0.0 0.0 0.0 0.0034909564832880154 0.0 20 0.0 0.0 0.0 0.0034909564832880154 0.0 21 0.0 0.0 0.0 0.0034909564832880154 0.0 22 0.0 0.0 0.0 0.0034909564832880154 0.0 23 0.0 0.0 0.0 0.004266724590685353 0.0 24 0.0 0.0 0.0 0.004654608644384021 0.0 25 0.0 0.0 0.0 0.004654608644384021 0.0 26 0.0 0.0 0.0 0.004654608644384021 0.0 27 0.0 0.0 0.0 0.013188057825754725 0.0 28 0.0 0.0 0.0 0.02482457943671478 0.0 29 0.0 0.0 0.0 0.035685332940277495 0.0 30 0.0 0.0 0.0 0.047709738604936214 0.0 31 0.0 0.0 0.0 0.06594028912877363 0.0 32 0.0 0.0 0.0 0.0810677672230217 0.0 33 0.0 0.0 0.0 0.10783176692822981 0.0 34 0.0 0.0 0.0 0.14390498392220596 0.0 35 0.0 0.0 0.0 0.2098452730509796 0.0 36 0.0 0.0 0.0 0.3118587791737294 0.0 37 0.0 0.0 0.0 0.4763216179419648 0.0 38 0.0 0.0 0.0 0.7051732096241792 0.0 39 0.0 0.0 0.0 0.966219177763383 0.0 40 0.0 0.0 0.0 1.2804052612593044 0.0 41 0.0 0.0 0.0 1.6128218952790632 0.0 42 0.0 0.0 0.0 1.988681543313073 0.0 43 0.0 0.0 0.0 2.4273784080462666 0.0 44 0.0 0.0 0.0 2.990973938070432 0.0 45 0.0 0.0 0.0 3.65270413368036 0.0 46 0.0 0.0 0.0 4.342749865210291 0.0 47 0.0 0.0 0.0 5.082832639667351 0.0 48 0.0 0.0 0.0 5.823691182231808 0.0 49 0.0 0.0 0.0 6.505203464580368 0.0 50 0.0 0.0 0.0 7.150254645881253 0.0 51 0.0 0.0 0.0 7.768153943423232 0.0 52 0.0 0.0 0.0 8.400017066898362 0.0 53 0.0 0.0 0.0 9.038474219286371 0.0 54 0.0 0.0 0.0 9.725416878386712 0.0 55 0.0 0.0 0.0 10.50079710173035 0.0 56 0.0 0.0 0.0 11.274625788859193 0.0 57 0.0 0.0 0.0 12.088406533519 0.0 58 0.0 0.0 0.0 12.823446815277977 0.0 59 0.0 0.0 0.0 13.52202599598928 0.0 60 0.0 0.0 0.0 14.257842045855654 0.0 61 0.0 0.0 0.0 14.912978212552703 0.0 62 0.0 0.0 0.0 15.573156871947837 0.0 63 0.0 0.0 0.0 16.24264474863174 0.0 64 0.0 0.0 0.0 16.910581089100845 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCG 15 0.0022229417 70.0 4 AACTCGT 15 0.0022229417 70.0 37 GCATATA 15 0.0022229417 70.0 1 CGTATGC 425 0.0 58.47059 41 TATGCCG 420 0.0 58.333332 43 TCGTATG 425 0.0 57.647057 40 ATGCCGT 415 0.0 57.3494 44 CTCGTAT 410 0.0 57.19512 39 CCGTCTT 405 0.0 57.037037 47 GCCGTCT 420 0.0 56.666664 46 TCTCGTA 360 0.0 56.388885 38 CCAACGT 25 2.3875473E-4 56.000004 22 ATCTCGT 365 0.0 55.616444 37 CGTCTTC 405 0.0 55.30864 48 TGCCGTC 435 0.0 54.712646 45 CATCTCG 375 0.0 54.133335 36 CAACTCG 20 0.006945953 52.5 36 GTATGCC 470 0.0 52.12766 42 CTTGAAA 440 0.0 50.909096 57 GCATCTC 400 0.0 50.750004 35 >>END_MODULE