##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781156_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 195865 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.209016414367035 34.0 34.0 34.0 32.0 34.0 2 33.260965460904195 34.0 34.0 34.0 32.0 34.0 3 33.32730196819238 34.0 34.0 34.0 33.0 34.0 4 33.393796747759936 34.0 34.0 34.0 34.0 34.0 5 33.38384601638884 34.0 34.0 34.0 33.0 34.0 6 36.77230235110918 38.0 37.0 38.0 34.0 38.0 7 36.68928598779772 38.0 37.0 38.0 34.0 38.0 8 36.4536696193807 38.0 37.0 38.0 34.0 38.0 9 36.4238174252674 38.0 37.0 38.0 34.0 38.0 10-11 36.347818650601184 38.0 37.0 38.0 34.0 38.0 12-13 36.27655528042274 38.0 37.0 38.0 34.0 38.0 14-15 36.29172389145585 38.0 37.0 38.0 34.0 38.0 16-17 36.22540525361856 38.0 37.0 38.0 34.0 38.0 18-19 36.230120235876754 38.0 37.0 38.0 34.0 38.0 20-21 36.16517499297986 38.0 37.0 38.0 33.0 38.0 22-23 36.2311234779057 38.0 37.0 38.0 34.0 38.0 24-25 36.23304827304521 38.0 37.0 38.0 34.0 38.0 26-27 36.01143389579558 38.0 37.0 38.0 32.0 38.0 28-29 36.00443417660123 38.0 37.0 38.0 32.0 38.0 30-31 35.99815178822148 38.0 37.0 38.0 32.0 38.0 32-33 35.954813264238126 38.0 37.0 38.0 32.0 38.0 34-35 35.963194036708956 38.0 37.0 38.0 32.0 38.0 36-37 35.91494907206494 38.0 36.5 38.0 32.0 38.0 38-39 35.83726801623567 38.0 36.0 38.0 31.0 38.0 40-41 35.9046613739055 38.0 36.5 38.0 32.0 38.0 42-43 35.913261685344494 38.0 36.0 38.0 32.0 38.0 44-45 35.87935823143492 38.0 36.0 38.0 32.0 38.0 46-47 35.90077859750338 38.0 36.5 38.0 32.0 38.0 48-49 35.8662343961402 38.0 36.0 38.0 31.5 38.0 50-51 35.77641743037296 38.0 36.0 38.0 31.0 38.0 52-53 35.81437724963623 38.0 36.0 38.0 31.0 38.0 54-55 35.83156000306333 38.0 36.0 38.0 31.5 38.0 56-57 35.7649171623312 38.0 36.0 38.0 31.0 38.0 58-59 35.77104893676767 38.0 36.0 38.0 31.0 38.0 60-61 35.76569065427718 38.0 36.0 38.0 31.0 38.0 62-63 35.737467132974245 38.0 36.0 38.0 31.0 38.0 64-65 35.67818140045439 38.0 36.0 38.0 31.0 38.0 66-67 35.64643759732469 38.0 36.0 38.0 31.0 38.0 68-69 35.548638092563756 38.0 36.0 38.0 31.0 38.0 70-71 35.44469404947285 38.0 36.0 38.0 31.0 38.0 72-73 35.32492788400174 38.0 36.0 38.0 30.0 38.0 74-75 35.34223572358512 38.0 36.0 38.0 30.0 38.0 76 34.38803767901361 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 13.0 22 21.0 23 63.0 24 128.0 25 244.0 26 554.0 27 952.0 28 1716.0 29 2718.0 30 4173.0 31 6201.0 32 8826.0 33 12270.0 34 16557.0 35 22892.0 36 34692.0 37 83841.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.110637428841294 19.514461491333314 10.714522758022108 27.66037832180328 2 22.126975212518825 19.802925484389757 32.73887626681643 25.331223036274984 3 20.041355014933757 22.435861435172185 28.834656523625966 28.688127026268095 4 14.221019579812626 17.48551298087969 36.12743471268476 32.16603272662293 5 13.696168279171877 34.468128557935316 36.63850100834758 15.197202154545222 6 30.86207336685983 38.07775763919026 16.844254971536518 14.215914022413397 7 29.31508947489342 28.5701886503459 21.61948280703546 20.49523906772522 8 25.755494856150918 35.394787225895385 18.65621729252291 20.193500625430783 9 24.223827636382204 15.936997421693514 20.43039848875501 39.408776453169274 10-11 25.0317820948102 25.374875552038397 27.151354249100145 22.441988104051262 12-13 24.902100936869783 23.06180277231767 26.680366579021264 25.355729711791287 14-15 22.67403568784622 23.756158578612823 23.301508692211474 30.26829704132949 16-17 23.960636152451944 27.555459117249125 24.72621448446634 23.75769024583259 18-19 23.739054961325404 26.512649018456592 25.701120669849132 24.047175350368878 20-21 22.521379521609273 26.3456972915018 25.5476986700023 25.58522451688663 22-23 23.012278865545145 26.948918898220715 25.945676869272205 24.09312536696194 24-25 23.71403773006918 27.30988180634621 25.878794067342305 23.097286396242307 26-27 22.98292191049958 27.321879866234394 26.206060296632884 23.48913792663314 28-29 23.559849896612462 26.066678579633933 26.836596635437676 23.536874888315932 30-31 22.979603298190078 27.007888086181808 26.13458249304368 23.877926122584434 32-33 22.414928649835346 26.45572205345519 27.778571975595433 23.350777321114034 34-35 24.00913894774462 26.720955760345134 26.585403211395604 22.68450208051464 36-37 23.354606489163455 26.628545171419088 26.551451254690733 23.465397084726725 38-39 22.078727695096113 26.70257575370791 27.335664871212316 23.883031679983663 40-41 22.33885584458683 25.45503280320629 27.97922038138514 24.226890970821742 42-43 23.296403134812245 25.477241977892934 27.583794960814846 23.642559926479972 44-45 21.83723483011258 26.264774206724017 27.96926454445664 23.928726418706763 46-47 22.837158246751592 24.799479233145277 27.498021596507797 24.865340923595333 48-49 22.19462384805861 24.726725040206265 28.14617210833993 24.932479003395194 50-51 21.056850381640416 24.90669593852909 28.902305159165753 25.134148520664745 52-53 20.763536109054705 24.830367855410614 30.095473923365585 24.310622112169096 54-55 20.029101677175607 25.29727107957011 29.433283128685574 25.240344114568707 56-57 20.670359686518776 25.349092487172285 28.039721236566002 25.940826589742933 58-59 20.080157251167897 25.172695479028924 29.37610088581421 25.371046383988972 60-61 20.491154621805833 25.742986240522807 27.93224925331223 25.833609884359127 62-63 19.06389605085135 26.876164705281695 27.834222551247034 26.225716692619915 64-65 19.556327062006996 27.0456692109361 26.718147703775557 26.67985602328134 66-67 19.75238046613739 27.019375590330075 26.209378908942384 27.01886503459015 68-69 19.749061853827893 27.238404002757 25.667168713144257 27.345365430270853 70-71 20.204988129579046 26.73346437597325 25.597733132514744 27.463814361932965 72-73 20.33722206621908 25.803231817833712 25.441503076098332 28.41804303984888 74-75 20.333137620299695 26.036300513108518 25.33326525923468 28.297296607357108 76 21.030301483164422 25.984734383376306 25.00855180864371 27.976412324815563 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 1.0 14 3.0 15 9.0 16 25.5 17 39.0 18 49.5 19 69.5 20 100.5 21 122.0 22 157.5 23 262.0 24 443.0 25 555.0 26 673.5 27 887.0 28 1144.5 29 1307.0 30 1511.0 31 1923.0 32 2698.5 33 3266.0 34 3587.5 35 4465.5 36 5623.0 37 6224.0 38 6786.0 39 8369.5 40 10479.5 41 12053.5 42 12539.0 43 12702.5 44 12672.5 45 12485.0 46 12491.0 47 12410.0 48 11526.5 49 10285.0 50 9846.0 51 9176.0 52 7756.0 53 6291.5 54 5577.0 55 5174.0 56 4325.0 57 3509.5 58 3140.0 59 2742.5 60 2190.0 61 1959.5 62 1884.0 63 1780.0 64 1639.5 65 1638.5 66 1647.5 67 1621.0 68 1580.0 69 1477.0 70 1379.5 71 1344.0 72 1339.5 73 1293.5 74 1148.0 75 1044.0 76 1008.0 77 862.5 78 690.5 79 628.0 80 533.0 81 391.0 82 306.0 83 268.0 84 240.5 85 167.0 86 98.5 87 76.0 88 53.5 89 29.0 90 18.5 91 7.5 92 5.0 93 2.5 94 1.5 95 2.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 195865.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.332729175707755 #Duplication Level Percentage of deduplicated Percentage of total 1 62.92226979436772 26.636714063257855 2 18.523789422902972 15.68325121895183 3 7.0964240487245975 9.01232992111914 4 3.0368449617077733 5.14231741250351 5 1.639027920159199 3.4692262527761466 6 1.104745824036664 2.806014346616292 7 0.8611228366399324 2.551757588134685 8 0.6464451546764759 2.189263012789421 9 0.5379002593016945 2.049370740050545 >10 3.5445938611831393 26.468230669083297 >50 0.07598142676234698 1.9253056952492786 >100 0.009648435144425014 0.6346207847241723 >500 0.0 0.0 >1k 0.0012060543930531267 1.4315982947438288 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT 2804 1.4315982947438288 No Hit TCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCG 310 0.1582722793761009 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001021111479845812 0.0 2 0.0 0.0 0.0 0.001021111479845812 0.0 3 0.0 0.0 0.0 0.001021111479845812 0.0 4 0.0 0.0 0.0 0.0030633344395374364 0.0 5 0.0 0.0 0.0 0.004595001659306154 0.0 6 0.0 0.0 0.0 0.004595001659306154 0.0 7 0.0 0.0 0.0 0.004595001659306154 0.0 8 0.0 0.0 0.0 0.004595001659306154 0.0 9 0.0 0.0 0.0 0.006637224618997779 0.0 10 0.0 0.0 0.0 0.006637224618997779 0.0 11 0.0 0.0 0.0 0.006637224618997779 0.0 12 0.0 0.0 0.0 0.006637224618997779 0.0 13 0.0 0.0 0.0 0.007147780358920685 0.0 14 0.0 0.0 0.0 0.007147780358920685 0.0 15 0.0 0.0 0.0 0.007147780358920685 0.0 16 0.0 0.0 0.0 0.007658336098843591 0.0 17 0.0 0.0 0.0 0.007658336098843591 0.0 18 0.0 0.0 0.0 0.007658336098843591 0.0 19 0.0 0.0 0.0 0.009700559058535216 0.0 20 0.0 0.0 0.0 0.009700559058535216 0.0 21 0.0 0.0 0.0 0.009700559058535216 0.0 22 0.0 0.0 0.0 0.009700559058535216 0.0 23 0.0 0.0 0.0 0.010721670538381028 0.0 24 0.0 0.0 0.0 0.01174278201822684 0.0 25 0.0 0.0 0.0 0.012253337758149746 0.0 26 0.0 0.0 0.0 0.013785004977918465 0.0 27 0.0 0.0 0.0 0.02859112143568274 0.0 28 0.0 0.0 0.0 0.0505450182523677 0.0 29 0.0 0.0 0.0 0.0668828019299007 0.0 30 0.0 0.0 0.0 0.08322058560743369 0.0 31 0.0 0.0 0.0 0.10211114798458122 0.0 32 0.0 0.0 0.0 0.1337656038598014 0.0 33 0.0 0.0 0.0 0.1766522860133255 0.0 34 0.0 0.0 0.0 0.23077119444515354 0.0 35 0.0 0.0 0.0 0.3374773440890409 0.0 36 0.0 0.0 0.0 0.49268628902560435 0.0 37 0.0 0.0 0.0 0.7525591606463635 0.0 38 0.0 0.0 0.0 1.0833992801164067 0.0 39 0.0 0.0 0.0 1.4550838587802823 0.0 40 0.0 0.0 0.0 1.9273479182089706 0.0 41 0.0 0.0 0.0 2.451178107369872 0.0 42 0.0 0.0 0.0 3.104178898731269 0.0 43 0.0 0.0 0.0 3.843463610139637 0.0 44 0.0 0.0 0.0 4.706813366349271 0.0 45 0.0 0.0 0.0 5.625813698210502 0.0 46 0.0 0.0 0.0 6.641819620657086 0.0 47 0.0 0.0 0.0 7.672631659561433 0.0 48 0.0 0.0 0.0 8.587036989763357 0.0 49 0.0 0.0 0.0 9.438643963954764 0.0 50 0.0 0.0 0.0 10.264212595410104 0.0 51 0.0 0.0 0.0 11.084165113726291 0.0 52 0.0 0.0 0.0 11.902075409082787 0.0 53 0.0 0.0 0.0 12.729686263497817 0.0 54 0.0 0.0 0.0 13.644091593699741 0.0 55 0.0 0.0 0.0 14.614658055293187 0.0 56 0.0 0.0 0.0 15.566333954509483 0.0 57 0.0 0.0 0.0 16.50933040614709 0.0 58 0.0 0.0 0.0 17.387996834554414 0.0 59 0.0 0.0 0.0 18.198248793812063 0.0 60 0.0 0.0 0.0 19.01054297602941 0.0 61 0.0 0.0 0.0 19.766165471115308 0.0 62 0.0 0.0 0.0 20.55344242207643 0.0 63 0.0 0.0 0.0 21.29987491384372 0.0 64 0.0 0.0 0.0 22.103489648482373 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 15 0.0022221417 70.00001 39 ATATCGT 15 0.0022221417 70.00001 37 ATCGATA 20 7.912231E-5 70.0 24 AATCGAT 20 7.912231E-5 70.0 23 TAATCGA 25 2.3861259E-4 55.999996 22 TCGTATG 390 0.0 47.564102 40 CGTATGC 395 0.0 46.96203 41 TATGCCG 395 0.0 46.96203 43 CCGATCA 30 5.8673974E-4 46.666668 35 CGTCTTC 390 0.0 46.666668 48 CCGTCTT 390 0.0 46.666668 47 GCGCTAA 30 5.8673974E-4 46.666668 11 CGATCAA 30 5.8673974E-4 46.666668 36 TATCGTA 30 5.8673974E-4 46.666668 38 GTTGCGG 30 5.8673974E-4 46.666668 33 CTCGTAT 375 0.0 46.666664 39 TCTCGTA 350 0.0 46.0 38 GCCGTCT 400 0.0 45.499996 46 CTTGAAA 385 0.0 45.454544 57 GTATGCC 420 0.0 44.166668 42 >>END_MODULE