##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781155_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 241377 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51776267001413 34.0 33.0 34.0 23.0 34.0 2 31.710892089967146 34.0 34.0 34.0 24.0 34.0 3 31.646279471532086 34.0 34.0 34.0 23.0 34.0 4 31.803833836695294 34.0 34.0 34.0 23.0 34.0 5 31.81588966637252 34.0 34.0 34.0 23.0 34.0 6 34.68763801024953 38.0 35.0 38.0 26.0 38.0 7 34.72934040940106 38.0 35.0 38.0 26.0 38.0 8 34.453261909792566 38.0 34.0 38.0 25.0 38.0 9 34.706082186786645 38.0 35.0 38.0 26.0 38.0 10-11 34.59227888324074 38.0 35.0 38.0 26.0 38.0 12-13 34.55078984327422 38.0 35.0 38.0 26.0 38.0 14-15 34.423629840457046 38.0 34.0 38.0 25.0 38.0 16-17 34.39405784312507 38.0 34.0 38.0 25.0 38.0 18-19 34.457899882756024 38.0 34.0 38.0 25.0 38.0 20-21 34.38700041843258 38.0 34.0 38.0 24.5 38.0 22-23 34.43250392539471 38.0 34.0 38.0 25.5 38.0 24-25 34.434138298180855 38.0 34.0 38.0 25.0 38.0 26-27 34.35723370495118 38.0 34.0 38.0 24.5 38.0 28-29 34.44311181264163 38.0 34.0 38.0 25.0 38.0 30-31 34.49939720851614 38.0 34.0 38.0 25.5 38.0 32-33 34.45430591978523 38.0 34.0 38.0 25.5 38.0 34-35 34.47273766763196 38.0 34.0 38.0 25.0 38.0 36-37 34.31889119510144 37.5 34.0 38.0 24.5 38.0 38-39 34.32877614685741 37.0 34.0 38.0 24.5 38.0 40-41 34.32701127282218 37.0 34.0 38.0 24.5 38.0 42-43 34.38752035198051 37.5 34.0 38.0 25.0 38.0 44-45 34.40069476379274 37.5 34.0 38.0 25.0 38.0 46-47 34.40953984845284 37.5 34.0 38.0 25.0 38.0 48-49 34.35259780343612 37.0 34.0 38.0 24.5 38.0 50-51 34.23225079440046 37.0 34.0 38.0 24.0 38.0 52-53 34.31868405026162 37.0 34.0 38.0 24.0 38.0 54-55 34.28623273965623 37.0 34.0 38.0 24.0 38.0 56-57 34.26012627549435 37.0 34.0 38.0 24.0 38.0 58-59 34.261597003857034 37.0 34.0 38.0 24.0 38.0 60-61 34.22827154202761 37.0 34.0 38.0 24.0 38.0 62-63 34.191720835042275 37.0 34.0 38.0 24.0 38.0 64-65 34.2093737182913 37.0 34.0 38.0 24.0 38.0 66-67 34.08456480940603 37.0 34.0 38.0 24.0 38.0 68-69 33.86973282458561 37.0 34.0 38.0 23.5 38.0 70-71 34.026756898958894 37.0 34.0 38.0 24.0 38.0 72-73 34.01353070093671 37.0 34.0 38.0 24.0 38.0 74-75 34.0141065635914 37.0 34.0 38.0 24.0 38.0 76 32.57468192909847 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 17.0 14 91.0 15 289.0 16 745.0 17 1186.0 18 1561.0 19 1796.0 20 1612.0 21 1658.0 22 1824.0 23 2052.0 24 2451.0 25 2792.0 26 3464.0 27 4119.0 28 4908.0 29 6055.0 30 7280.0 31 8924.0 32 11050.0 33 13930.0 34 18299.0 35 24325.0 36 37612.0 37 83331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.511059462997714 17.72372678424208 9.63927797594634 26.125935776813865 2 23.585097171644357 19.60211619168355 31.129726527382477 25.683060109289617 3 20.841256623456253 21.08775898283598 28.024211088877564 30.046773304830204 4 14.907385542118758 15.57936340247828 35.59452640475273 33.918724650650226 5 14.912357018274317 33.39506249559817 34.75103261702648 16.941547869101033 6 31.945048616893907 35.46112512791194 17.116792403584434 15.477033851609722 7 30.544335210065583 27.704379456203366 21.001586729472983 20.749698604258068 8 26.895271711886387 33.177560413792534 18.952924263703665 20.974243610617414 9 25.37855719476172 14.982786263811382 20.400038114650528 39.23861842677637 10-11 27.00195130439106 23.119021282060842 26.438310195254726 23.440717218293376 12-13 26.563425678502924 21.780244182337174 25.203934094797763 26.452396044362136 14-15 24.69000774721701 22.803332546182943 22.831504244397767 29.67515546220228 16-17 25.007353641813427 25.525215741350664 24.128645231318643 25.33878538551726 18-19 24.50813457785953 25.033661036469923 25.34251399263393 25.115690393036623 20-21 24.328954291419645 25.37006425632931 25.26856328482001 25.032418167431032 22-23 25.00176073113843 24.885345331162455 25.2975635623941 24.81533037530502 24-25 24.512898909175274 25.17451952754405 25.006110772774537 25.306470790506136 26-27 23.7066911926157 25.37814290508209 25.389328726432097 25.525837175870116 28-29 24.6773719119883 24.935681527237474 25.862033250889688 24.52491330988454 30-31 24.782394345774453 24.74179395717073 25.495179739577505 24.980631957477307 32-33 24.32957572593909 25.35680698658116 25.231070068813516 25.082547218666235 34-35 25.08917585354031 24.545006359346583 25.66420992886646 24.701607858246643 36-37 24.99803212402176 24.595963989941048 25.02351093931899 25.382492946718205 38-39 24.271782315630734 24.800415946838346 26.177514841927774 24.750286895603143 40-41 24.440398215240062 24.111452209614008 26.305530352933378 25.142619222212552 42-43 24.116837975449194 24.175459965116808 26.1681933241361 25.539508735297893 44-45 23.41378838911744 24.366654652265957 26.58828305928071 25.631273899335895 46-47 23.64061198871475 23.983022408928772 26.870000041428966 25.506365560927513 48-49 23.159621670664563 24.019894190415823 27.290918355932835 25.52956578298678 50-51 22.90069062089594 24.205288822050154 27.141774071266113 25.752246485787794 52-53 22.689195739444934 24.008501224226002 27.60204990533481 25.700253130994255 54-55 21.91799550081408 24.54210633158917 27.618828637359815 25.921069530236934 56-57 22.01825360328449 24.634907219826246 27.3864121270875 25.96042704980176 58-59 22.21628407014753 24.36893324550392 27.232917800784666 26.18186488356389 60-61 21.932702784440934 24.183745758709403 27.232917800784666 26.650633656064993 62-63 21.559427783094495 23.9875795954047 27.691743620974655 26.76124900052615 64-65 22.236998554129016 24.108137892176966 26.95513657059289 26.699726983101122 66-67 22.201369641680856 24.00787978970656 26.40123126892786 27.38951929968473 68-69 22.2311984986142 24.158888377931618 26.11309279674534 27.496820326708843 70-71 22.595566271848604 24.170074199281622 26.177929131607403 27.056430397262375 72-73 22.811251302425877 23.73470491120718 25.85607961006974 27.597964176297197 74-75 22.318613621016087 24.417405138020605 25.74188924379705 27.52209199716626 76 22.96366265219967 24.338275809211314 25.504915547048807 27.193145991540206 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 1.5 11 1.5 12 2.0 13 1.5 14 1.0 15 6.0 16 13.0 17 15.0 18 29.5 19 72.5 20 125.0 21 149.0 22 172.0 23 294.0 24 463.0 25 533.0 26 695.0 27 971.0 28 1262.5 29 1440.0 30 1714.5 31 2240.0 32 3131.5 33 3772.0 34 4088.5 35 4977.5 36 6249.0 37 6948.0 38 7747.5 39 9450.0 40 11080.0 41 12402.0 42 12997.0 43 13108.5 44 13409.0 45 13821.5 46 14045.0 47 13713.5 48 12633.0 49 11449.5 50 11015.0 51 10138.5 52 8328.5 53 7007.0 54 6619.0 55 6207.5 56 5373.0 57 4655.5 58 4361.0 59 4076.0 60 3664.5 61 3487.0 62 3436.0 63 3351.0 64 3288.0 65 3304.5 66 3354.0 67 3409.0 68 3355.5 69 3320.5 70 3294.5 71 3250.0 72 3192.0 73 3070.5 74 2848.0 75 2689.0 76 2493.0 77 2131.5 78 1713.5 79 1461.0 80 1331.0 81 1050.0 82 761.0 83 623.0 84 502.0 85 297.5 86 175.0 87 136.0 88 116.5 89 70.0 90 37.0 91 23.0 92 15.0 93 11.0 94 5.0 95 4.0 96 5.0 97 4.0 98 2.5 99 4.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 2.071448398148954E-4 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 241377.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.221211319970415 #Duplication Level Percentage of deduplicated Percentage of total 1 65.27504477229704 30.170916383408713 2 17.93566448275342 16.580162764428678 3 6.829229360403898 9.469657602593248 4 2.9059665258791165 5.3726917152567575 5 1.4876988676294842 3.4381621870591546 6 0.9455519073772274 2.6222732714930355 7 0.6700297681461478 2.1678711252907714 8 0.5397429549691225 1.995805854407447 9 0.4381030298898826 1.8224687452013622 >10 2.907845239761124 24.432634595558284 >50 0.06413637739515837 1.8803804493877034 >100 9.867134983870519E-4 0.04697530591485167 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0012428690388893722 0.0 2 0.0 0.0 0.0 0.001657158718519163 0.0 3 0.0 0.0 0.0 0.001657158718519163 0.0 4 0.0 0.0 0.0 0.001657158718519163 0.0 5 0.0 0.0 0.0 0.0024857380777787443 0.0 6 0.0 0.0 0.0 0.0024857380777787443 0.0 7 0.0 0.0 0.0 0.0024857380777787443 0.0 8 0.0 0.0 0.0 0.0024857380777787443 0.0 9 0.0 0.0 0.0 0.0024857380777787443 0.0 10 0.0 0.0 0.0 0.0024857380777787443 0.0 11 0.0 0.0 0.0 0.0024857380777787443 0.0 12 0.0 0.0 0.0 0.0024857380777787443 0.0 13 0.0 0.0 0.0 0.003314317437038326 0.0 14 0.0 0.0 0.0 0.0037286071166681167 4.1428967962979074E-4 15 0.0 0.0 0.0 0.0037286071166681167 4.1428967962979074E-4 16 0.0 0.0 0.0 0.0037286071166681167 4.1428967962979074E-4 17 0.0 0.0 0.0 0.0037286071166681167 4.1428967962979074E-4 18 0.0 0.0 0.0 0.004142896796297907 4.1428967962979074E-4 19 0.0 0.0 0.0 0.005385765835187279 4.1428967962979074E-4 20 0.0 0.0 0.0 0.00580005551481707 4.1428967962979074E-4 21 0.0 0.0 0.0 0.00580005551481707 4.1428967962979074E-4 22 0.0 0.0 0.0 0.008700083272225606 4.1428967962979074E-4 23 0.0 0.0 0.0 0.009528662631485187 4.1428967962979074E-4 24 0.0 0.0 0.0 0.010357241990744769 4.1428967962979074E-4 25 0.0 0.0 0.0 0.01118582135000435 4.1428967962979074E-4 26 0.0 0.0 0.0 0.012428690388893722 4.1428967962979074E-4 27 0.0 0.0 0.0 0.02278593237963849 4.1428967962979074E-4 28 0.0 0.0 0.0 0.03977180924445991 4.1428967962979074E-4 29 0.0 0.0 0.0 0.06090058290557924 4.1428967962979074E-4 30 0.0 0.0 0.0 0.08161506688706878 4.1428967962979074E-4 31 0.0 0.0 0.0 0.10522957862596685 4.1428967962979074E-4 32 0.0 0.0 0.0 0.13340127684079262 4.1428967962979074E-4 33 0.0 0.0 0.0 0.17400166544451212 4.1428967962979074E-4 34 0.0 0.0 0.0 0.2539595736130617 8.285793592595815E-4 35 0.0 0.0 0.0 0.3819750846186671 8.285793592595815E-4 36 0.0 0.0 0.0 0.6019629045020859 8.285793592595815E-4 37 0.0 0.0 0.0 0.9101944261466502 8.285793592595815E-4 38 0.0 0.0 0.0 1.2706264474245683 8.285793592595815E-4 39 0.0 0.0 0.0 1.6820160992969504 8.285793592595815E-4 40 0.0 0.0 0.0 2.1273775048989756 8.285793592595815E-4 41 0.0 0.0 0.0 2.5648674065880344 8.285793592595815E-4 42 0.0 0.0 0.0 3.070715105416009 8.285793592595815E-4 43 0.0 0.0 0.0 3.654449264014384 8.285793592595815E-4 44 0.0 0.0 0.0 4.325598545014645 8.285793592595815E-4 45 0.0 0.0 0.0 5.16702088434275 8.285793592595815E-4 46 0.0 0.0 0.0 6.013828989506043 8.285793592595815E-4 47 0.0 0.0 0.0 6.931894919565659 8.285793592595815E-4 48 0.0 0.0 0.0 7.810603330060445 8.285793592595815E-4 49 0.0 0.0 0.0 8.575796368336668 8.285793592595815E-4 50 0.0 0.0 0.0 9.257717181007305 8.285793592595815E-4 51 0.0 0.0 0.0 9.963666795096467 8.285793592595815E-4 52 0.0 0.0 0.0 10.637301814174506 8.285793592595815E-4 53 0.0 0.0 0.0 11.32626555139885 0.001657158718519163 54 0.0 0.0 0.0 12.123773184686197 0.001657158718519163 55 0.0 0.0 0.0 12.98715287703468 0.001657158718519163 56 0.0 0.0 0.0 13.841832486110938 0.001657158718519163 57 0.0 0.0 0.0 14.632297194844579 0.001657158718519163 58 0.0 0.0 0.0 15.473719534172684 0.001657158718519163 59 0.0 0.0 0.0 16.170140485630363 0.001657158718519163 60 0.0 0.0 0.0 16.936990682625105 0.001657158718519163 61 0.0 0.0 0.0 17.628440157927226 0.001657158718519163 62 0.0 0.0 0.0 18.298346569888597 0.001657158718519163 63 0.0 0.0 0.0 18.916881061575875 0.001657158718519163 64 0.0 0.0 0.0 19.604601929761326 0.001657158718519163 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGGTAT 15 0.0022227694 70.0 5 TATACCG 25 2.3872411E-4 55.999996 6 CGTCATA 20 0.0069454177 52.5 23 ACATGTA 30 5.870125E-4 46.666664 53 TTACTCG 35 0.001253799 40.0 19 TAACCGG 40 0.002415661 35.0 22 TAACACG 40 0.002415661 35.0 4 TGTTATC 40 0.002415661 35.0 20 GGTACAA 45 0.0043017855 31.111109 30 ATTCGTT 45 0.0043017855 31.111109 68 CATACGG 45 0.0043017855 31.111109 33 TAAGGCC 45 0.0043017855 31.111109 63 TGATCCG 50 0.0071992646 27.999998 5 CCATACG 50 0.0071992646 27.999998 32 ATCCATG 50 0.0071992646 27.999998 15 CGGCTTT 50 0.0071992646 27.999998 26 ATACCGC 50 0.0071992646 27.999998 7 GTAACAC 50 0.0071992646 27.999998 3 GACGGTG 65 7.9410314E-4 26.923077 7 ATAGGCG 70 0.0012237482 25.0 32 >>END_MODULE