##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781155_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219200 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.22573905109489 34.0 34.0 34.0 32.0 34.0 2 33.245086678832116 34.0 34.0 34.0 32.0 34.0 3 33.330602189781025 34.0 34.0 34.0 33.0 34.0 4 33.386733576642335 34.0 34.0 34.0 33.0 34.0 5 33.38282390510949 34.0 34.0 34.0 34.0 34.0 6 36.77988138686131 38.0 37.0 38.0 34.0 38.0 7 36.67040145985401 38.0 37.0 38.0 34.0 38.0 8 36.45148266423357 38.0 37.0 38.0 34.0 38.0 9 36.41440693430657 38.0 37.0 38.0 34.0 38.0 10-11 36.340814324817515 38.0 37.0 38.0 34.0 38.0 12-13 36.27451414233577 38.0 37.0 38.0 34.0 38.0 14-15 36.268953010948906 38.0 37.0 38.0 34.0 38.0 16-17 36.20535812043796 38.0 37.0 38.0 34.0 38.0 18-19 36.206443886861315 38.0 37.0 38.0 33.5 38.0 20-21 36.15072308394161 38.0 37.0 38.0 32.5 38.0 22-23 36.192547901459854 38.0 37.0 38.0 33.5 38.0 24-25 36.19021669708029 38.0 37.0 38.0 33.5 38.0 26-27 35.973672445255474 38.0 36.5 38.0 31.5 38.0 28-29 35.940207572992705 38.0 36.0 38.0 32.0 38.0 30-31 35.96633895985401 38.0 37.0 38.0 32.0 38.0 32-33 35.919867700729924 38.0 36.0 38.0 31.5 38.0 34-35 35.931729014598545 38.0 36.0 38.0 32.0 38.0 36-37 35.881459854014594 38.0 36.0 38.0 31.5 38.0 38-39 35.76779197080292 38.0 36.0 38.0 31.0 38.0 40-41 35.84339416058394 38.0 36.0 38.0 31.0 38.0 42-43 35.84988138686131 38.0 36.0 38.0 31.0 38.0 44-45 35.824425182481754 38.0 36.0 38.0 31.0 38.0 46-47 35.847862682481754 38.0 36.0 38.0 31.0 38.0 48-49 35.82982892335767 38.0 36.0 38.0 31.0 38.0 50-51 35.74214872262773 38.0 36.0 38.0 31.0 38.0 52-53 35.76642563868613 38.0 36.0 38.0 31.0 38.0 54-55 35.7746875 38.0 36.0 38.0 31.0 38.0 56-57 35.71366560218978 38.0 36.0 38.0 31.0 38.0 58-59 35.71910127737226 38.0 36.0 38.0 31.0 38.0 60-61 35.704114963503656 38.0 36.0 38.0 31.0 38.0 62-63 35.68340328467153 38.0 36.0 38.0 31.0 38.0 64-65 35.61709397810219 38.0 36.0 38.0 31.0 38.0 66-67 35.57142107664234 38.0 36.0 38.0 31.0 38.0 68-69 35.472579835766425 38.0 36.0 38.0 31.0 38.0 70-71 35.31315009124087 38.0 36.0 38.0 29.5 38.0 72-73 35.20132071167883 38.0 36.0 38.0 27.0 38.0 74-75 35.207055200729926 38.0 36.0 38.0 27.5 38.0 76 34.206181569343066 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 2.0 21 9.0 22 43.0 23 86.0 24 161.0 25 367.0 26 695.0 27 1176.0 28 2096.0 29 3365.0 30 4914.0 31 7115.0 32 10096.0 33 13566.0 34 18824.0 35 25380.0 36 37741.0 37 93562.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.75547445255474 17.972627737226276 9.353558394160585 27.918339416058398 2 23.63229927007299 19.276003649635037 31.38184306569343 25.709854014598537 3 20.816149635036496 20.973996350364963 28.73859489051095 29.471259124087588 4 15.038321167883211 17.11131386861314 34.42244525547446 33.427919708029194 5 15.192974452554745 32.9507299270073 35.01505474452555 16.84124087591241 6 32.25821167883212 36.575273722627735 16.093978102189784 15.072536496350363 7 30.20985401459854 27.63001824817518 20.376368613138688 21.78375912408759 8 26.166058394160586 34.60903284671532 18.129105839416056 21.095802919708028 9 24.727189781021895 14.717153284671532 19.314324817518248 41.24133211678832 10-11 26.497490875912412 24.069114963503647 26.26117700729927 23.17221715328467 12-13 26.024406934306572 21.50022810218978 25.55839416058394 26.91697080291971 14-15 23.998859489051092 22.37933394160584 22.076414233576642 31.545392335766426 16-17 25.656478102189784 26.084397810218977 23.117244525547445 25.141879562043794 18-19 25.333257299270073 24.887089416058394 24.19434306569343 25.5853102189781 20-21 24.00638686131387 24.94183394160584 24.19890510948905 26.85287408759124 22-23 24.52919708029197 25.602874087591243 24.237454379562042 25.630474452554747 24-25 25.659671532846716 25.588047445255473 23.958713503649633 24.793567518248175 26-27 24.56181569343066 25.857436131386862 24.59329379562044 24.987454379562042 28-29 24.43362226277372 24.43316605839416 26.121806569343065 25.011405109489047 30-31 24.360857664233578 24.311131386861316 25.662180656934307 25.665830291970803 32-33 23.923585766423358 25.74224452554745 25.70301094890511 24.631158759124087 34-35 24.657618613138684 24.358804744525546 26.705063868613138 24.27851277372263 36-37 24.49589416058394 26.092837591240876 24.583029197080293 24.82823905109489 38-39 23.685447080291972 24.96167883211679 25.786724452554743 25.566149635036496 40-41 23.851277372262775 23.72308394160584 26.636861313868614 25.78877737226277 42-43 24.871806569343065 23.631386861313867 26.378421532846712 25.11838503649635 44-45 23.112682481751825 24.963731751824817 26.639826642335766 25.28375912408759 46-47 24.324817518248175 23.653284671532845 26.025547445255476 25.996350364963504 48-49 23.641195255474454 23.405109489051096 26.473540145985403 26.48015510948905 50-51 22.499315693430656 23.642563868613138 27.434306569343065 26.423813868613138 52-53 22.028284671532848 23.722627737226276 28.824589416058394 25.42449817518248 54-55 21.278284671532845 23.89484489051095 28.123175182481752 26.703695255474454 56-57 22.115419708029197 24.054972627737225 26.831432481751825 26.998175182481752 58-59 21.28581204379562 24.118613138686133 28.191377737226276 26.40419708029197 60-61 22.242244525547445 24.578923357664234 26.445255474452555 26.733576642335766 62-63 20.387773722627735 25.983804744525546 26.494297445255476 27.13412408759124 64-65 20.9603102189781 26.214872262773724 25.58485401459854 27.239963503649633 66-67 21.155109489051092 26.17632299270073 24.972171532846716 27.696395985401463 68-69 21.170392335766422 26.634580291970806 24.54676094890511 27.648266423357665 70-71 21.260264598540147 25.937728102189784 24.783987226277375 28.018020072992698 72-73 20.958485401459853 24.50821167883212 25.19411496350365 29.339187956204384 74-75 20.844890510948904 24.677691605839417 25.747718978102192 28.72969890510949 76 21.33211678832117 24.59352189781022 25.749087591240876 28.325273722627735 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 4.5 15 9.5 16 14.0 17 15.0 18 26.0 19 54.5 20 100.5 21 129.0 22 161.5 23 249.0 24 430.5 25 557.0 26 627.5 27 791.0 28 1088.5 29 1293.0 30 1471.0 31 1912.0 32 2695.0 33 3215.0 34 3533.5 35 4259.0 36 5443.5 37 6221.0 38 7272.0 39 9490.5 40 11158.5 41 11749.5 42 11840.0 43 11939.5 44 12130.0 45 12217.0 46 12213.0 47 11963.5 48 11053.0 49 10167.0 50 9942.0 51 9152.5 52 7583.0 53 6399.5 54 5996.0 55 5679.0 56 4818.5 57 4014.0 58 3753.0 59 3500.0 60 3176.5 61 3026.5 62 2947.0 63 2930.0 64 2881.5 65 2959.5 66 3079.5 67 3090.0 68 3117.0 69 3087.0 70 3034.5 71 3039.0 72 3028.0 73 2878.5 74 2640.0 75 2540.0 76 2386.5 77 2017.5 78 1661.5 79 1521.0 80 1327.5 81 996.5 82 693.5 83 528.0 84 452.5 85 300.5 86 174.0 87 124.0 88 92.0 89 47.0 90 24.0 91 14.5 92 15.0 93 8.0 94 2.5 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 219200.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.70164233576642 #Duplication Level Percentage of deduplicated Percentage of total 1 62.84877431469802 28.094434306569344 2 19.435429551160368 17.375912408759124 3 7.482701610434144 10.034671532846716 4 3.045333006756067 5.445255474452555 5 1.5747147551691056 3.519616788321168 6 0.8868613883616027 2.3786496350364965 7 0.6858122588941277 2.1459854014598543 8 0.5684485538750433 2.0328467153284673 9 0.4470026330292083 1.7983576642335766 >10 2.9555242585675505 23.371350364963504 >50 0.06327434531463678 1.7655109489051093 >100 0.0051027697834384505 0.47992700729927007 >500 0.0 0.0 >1k 0.00102055395668769 1.5574817518248174 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT 3414 1.5574817518248174 No Hit TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG 359 0.16377737226277372 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC 289 0.13184306569343066 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0018248175182481751 0.0 2 0.0 0.0 0.0 0.002281021897810219 0.0 3 0.0 0.0 0.0 0.002281021897810219 0.0 4 0.0 0.0 0.0 0.002281021897810219 0.0 5 0.0 0.0 0.0 0.0031934306569343066 0.0 6 0.0 0.0 0.0 0.0031934306569343066 0.0 7 0.0 0.0 0.0 0.0031934306569343066 0.0 8 0.0 0.0 0.0 0.0031934306569343066 0.0 9 0.0 0.0 0.0 0.0031934306569343066 0.0 10 0.0 0.0 0.0 0.0036496350364963502 0.0 11 0.0 0.0 0.0 0.0036496350364963502 0.0 12 0.0 0.0 0.0 0.0036496350364963502 0.0 13 0.0 0.0 0.0 0.004562043795620438 0.0 14 0.0 0.0 0.0 0.004562043795620438 0.0 15 0.0 0.0 0.0 0.004562043795620438 0.0 16 0.0 0.0 0.0 0.004562043795620438 0.0 17 0.0 0.0 0.0 0.004562043795620438 0.0 18 0.0 0.0 0.0 0.005474452554744526 0.0 19 0.0 0.0 0.0 0.006386861313868613 0.0 20 0.0 0.0 0.0 0.006843065693430657 0.0 21 0.0 0.0 0.0 0.006843065693430657 0.0 22 0.0 0.0 0.0 0.006843065693430657 0.0 23 0.0 0.0 0.0 0.0072992700729927005 0.0 24 0.0 0.0 0.0 0.008211678832116789 0.0 25 0.0 0.0 0.0 0.009124087591240875 0.0 26 0.0 0.0 0.0 0.010492700729927007 0.0 27 0.0 0.0 0.0 0.020985401459854013 0.0 28 0.0 0.0 0.0 0.03923357664233577 0.0 29 0.0 0.0 0.0 0.06341240875912409 0.0 30 0.0 0.0 0.0 0.08622262773722628 0.0 31 0.0 0.0 0.0 0.1104014598540146 0.0 32 0.0 0.0 0.0 0.14005474452554745 0.0 33 0.0 0.0 0.0 0.1843065693430657 0.0 34 0.0 0.0 0.0 0.27007299270072993 0.0 35 0.0 0.0 0.0 0.4101277372262774 0.0 36 0.0 0.0 0.0 0.6446167883211679 0.0 37 0.0 0.0 0.0 0.9762773722627737 0.0 38 0.0 0.0 0.0 1.3608576642335766 0.0 39 0.0 0.0 0.0 1.8001824817518248 0.0 40 0.0 0.0 0.0 2.273266423357664 0.0 41 0.0 0.0 0.0 2.7317518248175183 0.0 42 0.0 0.0 0.0 3.260492700729927 0.0 43 0.0 0.0 0.0 3.8763686131386863 0.0 44 0.0 0.0 0.0 4.585766423357664 0.0 45 0.0 0.0 0.0 5.456204379562044 0.0 46 0.0 0.0 0.0 6.328923357664234 0.0 47 0.0 0.0 0.0 7.279653284671533 0.0 48 0.0 0.0 0.0 8.211678832116789 0.0 49 0.0 0.0 0.0 9.002737226277372 0.0 50 0.0 0.0 0.0 9.702554744525548 0.0 51 0.0 0.0 0.0 10.432481751824817 0.0 52 0.0 0.0 0.0 11.120437956204379 0.0 53 0.0 0.0 0.0 11.836678832116789 0.0 54 0.0 0.0 0.0 12.647810218978103 0.0 55 0.0 0.0 0.0 13.533759124087592 0.0 56 0.0 0.0 0.0 14.415602189781023 0.0 57 0.0 0.0 0.0 15.26779197080292 0.0 58 0.0 0.0 0.0 16.124543795620436 0.0 59 0.0 0.0 0.0 16.87043795620438 0.0 60 0.0 0.0 0.0 17.66788321167883 0.0 61 0.0 0.0 0.0 18.37226277372263 0.0 62 0.0 0.0 0.0 19.056569343065693 0.0 63 0.0 0.0 0.0 19.70027372262774 0.0 64 0.0 0.0 0.0 20.405565693430656 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCACAG 15 0.0022224968 70.0 49 TATGCCG 660 0.0 53.560604 43 CGTATGC 675 0.0 53.40741 41 TCGTATG 685 0.0 52.62774 40 AGCCGAC 20 0.0069445707 52.5 21 TTAGCGT 20 0.0069445707 52.5 26 ATCGTAT 40 7.4563286E-7 52.5 39 ACAGCGT 20 0.0069445707 52.5 8 CTCGTAT 650 0.0 52.230766 39 CTTGAAA 630 0.0 52.22222 57 ATCTCGT 590 0.0 51.01695 37 CCGTCTT 670 0.0 50.67164 47 AATCTCG 595 0.0 50.588234 36 ATGCCGT 685 0.0 50.583942 44 TGCCGTC 695 0.0 50.359715 45 TCTCGTA 605 0.0 49.752068 38 CGTCTTC 685 0.0 49.562046 48 GTATGCC 720 0.0 49.097225 42 GCCGTCT 700 0.0 49.0 46 TTGAAAA 665 0.0 48.94737 58 >>END_MODULE