##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781154_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 104315 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.03847960504242 34.0 32.0 34.0 21.0 34.0 2 31.144456693668218 34.0 32.0 34.0 23.0 34.0 3 31.132723002444518 34.0 32.0 34.0 23.0 34.0 4 31.26442026554187 34.0 33.0 34.0 23.0 34.0 5 31.23821118726933 34.0 33.0 34.0 23.0 34.0 6 34.04416431002253 37.0 34.0 38.0 24.0 38.0 7 33.83799070124143 37.0 34.0 38.0 23.0 38.0 8 33.695029478023294 37.0 34.0 38.0 22.0 38.0 9 34.04109667833006 37.0 34.0 38.0 24.0 38.0 10-11 33.88323826870536 37.0 34.0 38.0 23.0 38.0 12-13 33.847452427742894 37.0 34.0 38.0 23.0 38.0 14-15 33.738057805684704 37.0 34.0 38.0 22.0 38.0 16-17 33.69844221828117 37.0 34.0 38.0 22.5 38.0 18-19 33.77496045631021 37.0 34.0 38.0 22.5 38.0 20-21 33.668571154675746 37.0 34.0 38.0 22.0 38.0 22-23 33.74226621291281 37.0 34.0 38.0 22.5 38.0 24-25 33.74074198341562 37.0 34.0 38.0 22.0 38.0 26-27 33.663964913962516 37.0 34.0 38.0 22.0 38.0 28-29 33.75996740641327 37.0 34.0 38.0 22.5 38.0 30-31 33.844341657479745 37.0 34.0 38.0 23.0 38.0 32-33 33.77993097828692 37.0 34.0 38.0 23.0 38.0 34-35 33.82273881992043 37.0 34.0 38.0 23.0 38.0 36-37 33.662991899535065 37.0 34.0 38.0 22.0 38.0 38-39 33.69676940037387 37.0 34.0 38.0 22.0 38.0 40-41 33.66192781479174 37.0 34.0 38.0 22.0 38.0 42-43 33.765666490916935 37.0 34.0 38.0 23.0 38.0 44-45 33.769831759574366 37.0 34.0 38.0 23.0 38.0 46-47 33.76532138235153 37.0 34.0 38.0 23.0 38.0 48-49 33.70069980347985 37.0 34.0 38.0 22.5 38.0 50-51 33.590940900158174 37.0 34.0 38.0 22.0 38.0 52-53 33.674495518381825 37.0 34.0 38.0 22.5 38.0 54-55 33.66003930403106 37.0 34.0 38.0 22.0 38.0 56-57 33.61386665388487 37.0 34.0 38.0 22.0 38.0 58-59 33.60187413123712 37.0 34.0 38.0 22.0 38.0 60-61 33.587715093706564 37.0 34.0 38.0 22.0 38.0 62-63 33.550932272444044 37.0 34.0 38.0 22.0 38.0 64-65 33.5827301922063 37.0 34.0 38.0 22.0 38.0 66-67 33.479235967981595 37.0 34.0 38.0 22.0 38.0 68-69 33.25640128457077 37.0 33.5 38.0 21.0 38.0 70-71 33.46094042084072 37.0 34.0 38.0 21.5 38.0 72-73 33.42659732540862 37.0 33.5 38.0 22.0 38.0 74-75 33.42489095527968 37.0 33.0 38.0 21.5 38.0 76 32.08330537314863 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 13.0 14 67.0 15 225.0 16 502.0 17 813.0 18 1098.0 19 1112.0 20 1021.0 21 1013.0 22 1009.0 23 1155.0 24 1257.0 25 1498.0 26 1838.0 27 2052.0 28 2548.0 29 2899.0 30 3526.0 31 4178.0 32 5056.0 33 6079.0 34 7723.0 35 10178.0 36 15358.0 37 32092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.8754733259838 19.35100417006183 9.443512438287877 25.330010065666492 2 22.788668935435936 19.810190289028423 32.570579494799404 24.830561280736234 3 19.82936298710636 22.277716531658918 29.130997459617504 28.76192302161722 4 13.92704788381345 16.19230216172171 37.797056990845036 32.08359296361981 5 13.476489478981929 33.996069596894024 36.31309015961271 16.214350764511337 6 30.171116330345587 37.49700426592532 17.590950486507214 14.740928917221877 7 28.582658294588505 28.68043905478598 22.813593442937258 19.923309207688252 8 25.918611896659154 34.80995063030245 19.02219239802521 20.24924507501318 9 24.8708239466999 14.860758280208982 21.66514882806883 38.60326894502229 10-11 25.63725255236543 24.182044768250012 27.895796385946415 22.284906293438144 12-13 25.228394765853423 22.5724967646072 26.672098931122086 25.527009538417296 14-15 23.718544792215884 24.019556152039495 24.004697311029094 28.257201744715527 16-17 23.894933614532903 26.602597900589558 25.276326511048268 24.226141973829268 18-19 23.347553084407803 26.166419019316496 26.4228538561089 24.0631740401668 20-21 23.188899007812875 26.341849206729616 26.297272683698413 24.171979101759096 22-23 23.912189042803046 25.53419930019652 26.726741120644203 23.82687053635623 24-25 23.39165028998706 26.24023390691655 26.406557062742653 23.961558740353738 26-27 22.460336480851268 26.790490341753344 26.73153429516369 24.0176388822317 28-29 23.352825576379235 25.874514691079902 27.62210612088386 23.150553611657003 30-31 23.56372525523654 25.94353640416048 26.743037914010447 23.749700426592533 32-33 22.79442074485932 26.450174950869958 26.871974308584573 23.883429995686143 34-35 23.750659061496428 25.699563821118726 27.015769544169103 23.53400757321574 36-37 23.889181805109523 25.533240665292624 26.25796865263864 24.319608876959208 38-39 23.052772851459522 26.314528111968556 27.262138714470595 23.370560322101326 40-41 23.30872837079998 25.41293198485357 27.7639840866606 23.514355557685857 42-43 22.91329147294253 25.525571586061446 27.242966016392657 24.318170924603365 44-45 22.37118343478886 25.51694387192638 27.776446340411255 24.335426352873508 46-47 22.850980204189234 25.3578104778795 27.659972199587784 24.131237118343478 48-49 22.214925945453672 25.316109859559987 27.96625605138283 24.502708143603506 50-51 22.27052676987969 25.373148636341845 27.93941427407372 24.41691031970474 52-53 22.193356660115995 25.51694387192638 28.117241048746582 24.172458419211043 54-55 21.668504050232468 25.617600536835543 28.349230695489624 24.36466471744236 56-57 21.40987786874245 25.68734781525011 28.088271948156528 24.814502367850913 58-59 21.981977663806738 25.686142932464172 27.477352250395437 24.854527153333652 60-61 21.452914024416547 25.34115583164373 27.879153904778338 25.32677623916138 62-63 21.214590423237308 25.359248430235343 28.35881704452859 25.067344101998756 64-65 22.100369074438 25.232708622920963 27.527680582850024 25.139241719791016 66-67 21.718832382687054 25.496812538944543 27.2156449216316 25.568710156736806 68-69 21.458563006279057 25.76331304222787 27.128888462828932 25.64923548866414 70-71 21.882279633801467 25.596510568949814 27.38148876000575 25.139721037242968 72-73 21.91439390308201 25.353017303360016 26.9256578632028 25.806930930355175 74-75 21.632555241336338 25.761395772420077 26.84992570579495 25.75612328044864 76 21.99396060010545 25.420121746632795 26.76987969131956 25.816037961942197 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.5 14 1.5 15 4.0 16 15.5 17 24.0 18 30.5 19 48.0 20 76.0 21 93.0 22 111.5 23 164.5 24 255.0 25 311.0 26 386.0 27 506.5 28 633.5 29 715.0 30 868.5 31 1088.0 32 1462.5 33 1771.0 34 1973.5 35 2437.0 36 3075.0 37 3452.0 38 3805.5 39 4559.0 40 5387.0 41 6054.5 42 6294.0 43 6378.0 44 6524.5 45 6621.0 46 6655.0 47 6458.0 48 5995.5 49 5436.0 50 5142.0 51 4717.0 52 3854.0 53 3243.0 54 3070.0 55 2790.5 56 2317.5 57 1902.0 58 1680.0 59 1509.0 60 1259.5 61 1100.0 62 1019.0 63 985.5 64 922.5 65 866.0 66 814.5 67 790.0 68 832.0 69 859.5 70 842.5 71 840.0 72 849.5 73 791.5 74 728.5 75 733.0 76 670.0 77 563.5 78 465.5 79 411.0 80 342.0 81 246.5 82 184.5 83 149.0 84 124.0 85 82.5 86 51.0 87 36.0 88 24.0 89 10.0 90 4.0 91 1.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 9.586349038968509E-4 58-59 0.0 60-61 4.7931745194842545E-4 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 104315.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.44921631596607 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76802241657468 42.7704548722619 2 11.845121847669187 13.37295690936107 3 4.405196569584784 7.460096822125293 4 2.165237326993292 4.889038009873939 5 1.3382015793495798 3.7770215213535927 6 0.9187399167869577 3.111728898049178 7 0.6775919164473125 2.6774672865839046 8 0.4890889020973083 2.208694818578344 9 0.3583255498004585 1.82044768250012 >10 2.0293792986329287 17.754877055073575 >50 0.005094676063513628 0.15721612423908354 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.586349038968509E-4 0.0 2 0.0 0.0 0.0 9.586349038968509E-4 0.0 3 0.0 0.0 0.0 9.586349038968509E-4 0.0 4 0.0 0.0 0.0 0.0019172698077937018 0.0 5 0.0 0.0 0.0 0.0019172698077937018 0.0 6 0.0 0.0 0.0 0.0019172698077937018 0.0 7 0.0 0.0 0.0 0.0019172698077937018 0.0 8 0.0 0.0 0.0 0.0019172698077937018 0.0 9 0.0 0.0 0.0 0.0028759047116905527 0.0 10 0.0 0.0 0.0 0.0038345396155874036 0.0 11 0.0 0.0 0.0 0.004793174519484254 0.0 12 0.0 0.0 0.0 0.004793174519484254 0.0 13 0.0 0.0 0.0 0.004793174519484254 0.0 14 0.0 0.0 0.0 0.004793174519484254 0.0 15 0.0 0.0 0.0 0.004793174519484254 0.0 16 0.0 0.0 0.0 0.004793174519484254 0.0 17 0.0 0.0 0.0 0.004793174519484254 0.0 18 0.0 0.0 0.0 0.004793174519484254 0.0 19 0.0 0.0 0.0 0.004793174519484254 0.0 20 0.0 0.0 0.0 0.004793174519484254 0.0 21 0.0 0.0 0.0 0.004793174519484254 0.0 22 0.0 0.0 0.0 0.012462253750659062 0.0 23 0.0 0.0 0.0 0.013420888654555912 0.0 24 0.0 0.0 0.0 0.015338158462349614 0.0 25 0.0 0.0 0.0 0.015338158462349614 0.0 26 0.0 0.0 0.0 0.016296793366246464 0.0 27 0.0 0.0 0.0 0.02013133298183387 0.0 28 0.0 0.0 0.0 0.028759047116905526 0.0 29 0.0 0.0 0.0 0.04026266596366774 0.0 30 0.0 0.0 0.0 0.0565594593299142 0.0 31 0.0 0.0 0.0 0.07669079231174807 0.0 32 0.0 0.0 0.0 0.09682212529358195 0.0 33 0.0 0.0 0.0 0.13133298183386857 0.0 34 0.0 0.0 0.0 0.18501653645209223 0.0 35 0.0 0.0 0.0 0.2732109476106025 0.0 36 0.0 0.0 0.0 0.3767435172314624 0.0 37 0.0 0.0 0.0 0.5608014187796577 0.0 38 0.0 0.0 0.0 0.8205914777357044 0.0 39 0.0 0.0 0.0 1.0957196951541006 0.0 40 0.0 0.0 0.0 1.3622201984374251 0.0 41 0.0 0.0 0.0 1.6536452092220677 0.0 42 0.0 0.0 0.0 1.9719119973158223 0.0 43 0.0 0.0 0.0 2.397545894646024 0.0 44 0.0 0.0 0.0 2.866318362651584 0.0 45 0.0 0.0 0.0 3.409864353161099 0.0 46 0.0 0.0 0.0 4.02434932655898 0.0 47 0.0 0.0 0.0 4.656089728227005 0.0 48 0.0 0.0 0.0 5.227436130949528 0.0 49 0.0 0.0 0.0 5.7633130422278676 0.0 50 0.0 0.0 0.0 6.257968652638643 0.0 51 0.0 0.0 0.0 6.724823850836409 0.0 52 0.0 0.0 0.0 7.226189905574462 0.0 53 0.0 0.0 0.0 7.766859991372286 0.0 54 0.0 0.0 0.0 8.295067823419451 0.0 55 0.0 0.0 0.0 8.875041940277045 0.0 56 0.0 0.0 0.0 9.514451421176245 0.0 57 0.0 0.0 0.0 10.080046014475387 0.0 58 0.0 0.0 0.0 10.623592004984902 0.0 59 0.0 0.0 0.0 11.189186598284044 0.0 60 0.0 0.0 0.0 11.76532617552605 0.0 61 0.0 0.0 0.0 12.259981785936827 0.0 62 0.0 0.0 0.0 12.807362316061928 0.0 63 0.0 0.0 0.0 13.387336432919522 0.0 64 0.0 0.0 0.0 13.894454297080957 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACACG 15 0.0022192213 70.0 4 ACCAGGT 15 0.0022192213 70.0 30 TCGTGTA 25 2.3809366E-4 55.999996 13 GTCGTGT 25 2.3809366E-4 55.999996 12 TGATCAA 20 0.006934416 52.5 10 ACCGGGT 20 0.006934416 52.5 14 GCAACTC 20 0.006934416 52.5 25 TACGGCG 20 0.006934416 52.5 26 CTGGTCC 20 0.006934416 52.5 36 AGTCTAA 20 0.006934416 52.5 58 CGATGCC 20 0.006934416 52.5 63 GCGGACT 20 0.006934416 52.5 30 GCATTAC 35 0.0012505274 40.0 43 GAAACCG 35 0.0012505274 40.0 21 CGTGTAG 35 0.0012505274 40.0 14 GTGGTAC 35 0.0012505274 40.0 14 GTAACAC 35 0.0012505274 40.0 3 TGGTACC 35 0.0012505274 40.0 15 GGTACCC 40 0.0024093955 35.0 16 TACCCAA 60 1.2059934E-5 35.0 18 >>END_MODULE