##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781151_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 87678 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.22979538766852 34.0 34.0 34.0 32.0 34.0 2 33.26524327653459 34.0 34.0 34.0 33.0 34.0 3 33.35076073815552 34.0 34.0 34.0 33.0 34.0 4 33.41679782841762 34.0 34.0 34.0 34.0 34.0 5 33.40858596227104 34.0 34.0 34.0 34.0 34.0 6 36.812130751157646 38.0 37.0 38.0 34.0 38.0 7 36.70648281210794 38.0 37.0 38.0 34.0 38.0 8 36.46513378498597 38.0 37.0 38.0 34.0 38.0 9 36.48444307580009 38.0 37.0 38.0 34.0 38.0 10-11 36.385108008850565 38.0 37.0 38.0 34.0 38.0 12-13 36.340290608818634 38.0 37.0 38.0 34.0 38.0 14-15 36.33608773010333 38.0 37.0 38.0 34.0 38.0 16-17 36.269662857273204 38.0 37.0 38.0 34.0 38.0 18-19 36.2538949337348 38.0 37.0 38.0 34.0 38.0 20-21 36.20175528638883 38.0 37.0 38.0 33.5 38.0 22-23 36.27639772805037 38.0 37.0 38.0 34.0 38.0 24-25 36.23400967175346 38.0 37.0 38.0 34.0 38.0 26-27 36.02880996373092 38.0 36.5 38.0 32.5 38.0 28-29 36.00373525855973 38.0 37.0 38.0 32.0 38.0 30-31 36.03910330983827 38.0 37.0 38.0 32.0 38.0 32-33 35.852425922124134 38.0 36.0 38.0 31.0 38.0 34-35 35.90403521978148 38.0 36.0 38.0 31.5 38.0 36-37 35.93314172312324 38.0 36.5 38.0 32.0 38.0 38-39 35.671171787677636 38.0 36.0 38.0 31.0 38.0 40-41 35.8372909966012 38.0 36.0 38.0 31.5 38.0 42-43 35.899410342389196 38.0 36.5 38.0 31.5 38.0 44-45 35.9015488491982 38.0 36.0 38.0 32.0 38.0 46-47 35.915126941764186 38.0 37.0 38.0 32.0 38.0 48-49 35.89480827573622 38.0 36.0 38.0 32.0 38.0 50-51 35.77018750427702 38.0 36.0 38.0 31.0 38.0 52-53 35.802208079563854 38.0 36.0 38.0 31.0 38.0 54-55 35.80857227582746 38.0 36.0 38.0 31.0 38.0 56-57 35.74065329957344 38.0 36.0 38.0 31.0 38.0 58-59 35.69062934829718 38.0 36.0 38.0 31.0 38.0 60-61 35.6850065010607 38.0 36.0 38.0 31.0 38.0 62-63 35.65536394534547 38.0 36.0 38.0 31.0 38.0 64-65 35.63254180067976 38.0 36.0 38.0 31.0 38.0 66-67 35.55885170738384 38.0 36.0 38.0 31.0 38.0 68-69 35.40474235269965 38.0 36.0 38.0 31.0 38.0 70-71 35.14671867515226 38.0 36.0 38.0 28.0 38.0 72-73 34.92129724674376 38.0 36.0 38.0 27.0 38.0 74-75 34.90497046009261 38.0 36.0 38.0 27.0 38.0 76 34.04737790551792 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 3.0 22 16.0 23 29.0 24 95.0 25 149.0 26 298.0 27 507.0 28 818.0 29 1287.0 30 1987.0 31 2829.0 32 3859.0 33 5547.0 34 7441.0 35 10253.0 36 15101.0 37 37456.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.67597344829946 17.33844293893565 8.974885376035036 29.010698236729855 2 23.17000843997354 19.5031820981318 32.3433472478843 24.98346221401036 3 20.56502201236342 20.753210611555918 30.494536827938596 28.187230548142068 4 14.775656379023244 19.174707452268528 34.11688222815302 31.932753940555216 5 14.406122402427062 32.135769520290154 36.835922352243436 16.622185725039348 6 30.332580578936565 38.26387463217683 17.072697826136547 14.330846962750062 7 29.1030817308789 27.768653482059353 20.089418098040557 23.03884668902119 8 25.65181687538493 36.087730103332646 17.923538401879604 20.336914619402815 9 24.294577887269327 15.578594402244578 19.22489107871986 40.90193663176623 10-11 25.53091995711581 24.853441000022812 26.89329136157303 22.72234768128835 12-13 25.224115513583794 21.52820547913958 26.19186112821917 27.055817879057457 14-15 23.410661739546978 22.254727525719108 22.12356577476676 32.21104495996715 16-17 25.814913661351763 26.81744565341363 22.773671844704488 24.593968840530124 18-19 25.636989894842493 24.928146171217406 24.004311229726955 25.430552704213145 20-21 23.43404274732544 24.87283012842446 23.671844704486873 28.021282419763228 22-23 23.756244439882295 26.082369579598076 24.01742740482219 26.14395857569744 24-25 25.837724400647826 26.25687173521294 23.76764980953033 24.13775405460891 26-27 24.996008120623188 26.694267661214898 24.317388626565386 23.99233559159652 28-29 23.27208649832341 24.761627774356167 26.47129268459591 25.494993042724513 30-31 23.44430758000867 26.258582540660143 24.65669837359429 25.6404115057369 32-33 23.06108715983485 27.21150117475307 23.699217591642142 26.028194073769935 34-35 23.734003969068638 24.00317069276215 26.37662811651726 25.88619722165195 36-37 23.59257738543306 25.66721412440977 24.600812062318937 26.139396427838225 38-39 22.821574397226215 25.028513424120074 26.538014097036882 25.611898081616825 40-41 22.966992860238598 23.62622322589475 27.42877346654805 25.9780104473186 42-43 25.155683295695614 23.615388124729122 26.966855995802824 24.26207258377244 44-45 22.539291498437464 25.930107894796873 27.569059513218825 23.961541093546842 46-47 24.55576085220922 23.93758981728598 25.897602591299986 25.609046739204818 48-49 23.949565455416412 23.616528661693927 25.679760031022607 26.75414585186706 50-51 22.060836241702596 23.841214443760123 27.754967038481716 26.342982276055565 52-53 21.593786354615755 23.73913638541025 30.29038071123885 24.376696548735143 54-55 21.175209288533043 23.854330618855357 28.585277948858323 26.385182143753276 56-57 23.40666986017017 24.12235680558407 25.951207828645728 26.519765505600034 58-59 21.568694541390087 23.988913980702115 29.105362804808504 25.337028673099294 60-61 23.167727366043934 25.6392709687721 26.161636898651885 25.031364766532082 62-63 20.817650950067293 28.227719610392572 25.610187276169622 25.344442163370516 64-65 20.928283035653187 28.560756404115057 24.959510937749492 25.551449622482263 66-67 21.194598416934692 29.05803052076918 24.2843130545861 25.463058007710032 68-69 21.030361094003055 29.081981797030043 24.34133990282625 25.54631720614065 70-71 21.240790164009216 27.935742147402998 24.803257373571476 26.020210315016314 72-73 21.086247405278407 26.51805470015283 25.197312894910922 27.198384999657836 74-75 20.899199343050707 26.111453272200553 25.273728871552727 27.71561851319601 76 21.532197358516388 26.00196172357946 25.01995939688405 27.445881521020098 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.5 15 5.0 16 7.5 17 8.0 18 25.5 19 43.0 20 56.0 21 69.0 22 109.5 23 176.0 24 256.0 25 310.0 26 375.0 27 468.5 28 600.5 29 704.0 30 813.0 31 972.0 32 1275.5 33 1529.0 34 1619.0 35 1924.5 36 2304.0 37 2468.0 38 2658.5 39 3198.0 40 3993.5 41 4804.0 42 5168.0 43 5310.0 44 5414.5 45 5153.0 46 4929.0 47 4843.0 48 4379.5 49 3819.5 50 3637.0 51 3311.5 52 2778.5 53 2373.5 54 2176.0 55 2178.0 56 1991.0 57 1699.5 58 1597.0 59 1519.0 60 1391.5 61 1291.5 62 1241.0 63 1161.0 64 1099.5 65 1109.5 66 1123.0 67 1145.0 68 1120.5 69 1124.5 70 1151.0 71 1149.0 72 1089.0 73 1002.0 74 941.5 75 908.0 76 855.0 77 732.0 78 609.5 79 557.0 80 469.5 81 331.0 82 253.5 83 227.0 84 169.5 85 87.0 86 49.5 87 37.0 88 28.0 89 15.0 90 7.5 91 3.5 92 3.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 87678.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.60751841967198 #Duplication Level Percentage of deduplicated Percentage of total 1 63.99727671162929 34.30735190127512 2 20.3246670354453 21.791099249526678 3 7.576273350070211 12.184356394990761 4 3.070082124164929 6.583179360843085 5 1.5318497085230416 4.105933073290905 6 0.9403855155099783 3.0247040306576336 7 0.6552912642015234 2.4589976961153313 8 0.49785115526998847 2.135085198111271 9 0.3191353559423003 1.5397249024840896 >10 1.072294795966129 7.955245329501129 >50 0.006382707118846007 0.2497775952918634 >100 0.006382707118846007 0.8097812450101507 >500 0.0 0.0 >1k 0.0021275690396153355 2.8547640229019824 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCGT 2503 2.8547640229019824 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCG 285 0.32505303496886334 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCC 261 0.29768014781359065 No Hit CTTATACACATCTCCGAGCCCACGAGACTACACCTCACCTCGTATGCCGT 164 0.1870480622276968 No Hit CTTATACACATCTCCGAGCCCACGAGACTACACCTCAACTCGTATGCCGT 92 0.1049294007618787 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0022810739296060586 0.0 2 0.0 0.0 0.0 0.003421610894409088 0.0 3 0.0 0.0 0.0 0.003421610894409088 0.0 4 0.0 0.0 0.0 0.003421610894409088 0.0 5 0.0 0.0 0.0 0.003421610894409088 0.0 6 0.0 0.0 0.0 0.0057026848240151464 0.0 7 0.0 0.0 0.0 0.0057026848240151464 0.0 8 0.0 0.0 0.0 0.0057026848240151464 0.0 9 0.0 0.0 0.0 0.006843221788818176 0.0 10 0.0 0.0 0.0 0.006843221788818176 0.0 11 0.0 0.0 0.0 0.006843221788818176 0.0 12 0.0 0.0 0.0 0.007983758753621204 0.0 13 0.0 0.0 0.0 0.007983758753621204 0.0 14 0.0 0.0 0.0 0.007983758753621204 0.0 15 0.0 0.0 0.0 0.007983758753621204 0.0 16 0.0 0.0 0.0 0.007983758753621204 0.0 17 0.0 0.0 0.0 0.009124295718424234 0.0 18 0.0 0.0 0.0 0.010264832683227263 0.0 19 0.0 0.0 0.0 0.01596751750724241 0.0 20 0.0 0.0 0.0 0.01596751750724241 0.0 21 0.0 0.0 0.0 0.01710805447204544 0.0 22 0.0 0.0 0.0 0.01710805447204544 0.0 23 0.0 0.0 0.0 0.021670202331257556 0.0 24 0.0 0.0 0.0 0.021670202331257556 0.0 25 0.0 0.0 0.0 0.023951276260863616 0.0 26 0.0 0.0 0.0 0.025091813225666643 0.0 27 0.0 0.0 0.0 0.04334040466251511 0.0 28 0.0 0.0 0.0 0.06158899609936358 0.0 29 0.0 0.0 0.0 0.09124295718424234 0.0 30 0.0 0.0 0.0 0.12203745523392413 0.0 31 0.0 0.0 0.0 0.15397249024840895 0.0 32 0.0 0.0 0.0 0.1870480622276968 0.0 33 0.0 0.0 0.0 0.2497775952918634 0.0 34 0.0 0.0 0.0 0.33645840461689364 0.0 35 0.0 0.0 0.0 0.466479618604439 0.0 36 0.0 0.0 0.0 0.6672141244097721 0.0 37 0.0 0.0 0.0 0.9546294395401355 0.0 38 0.0 0.0 0.0 1.240904217705696 0.0 39 0.0 0.0 0.0 1.6115787312666803 0.0 40 0.0 0.0 0.0 1.9400533771299528 0.0 41 0.0 0.0 0.0 2.2810739296060585 0.0 42 0.0 0.0 0.0 2.6825429412167248 0.0 43 0.0 0.0 0.0 3.121649672665891 0.0 44 0.0 0.0 0.0 3.662264193982527 0.0 45 0.0 0.0 0.0 4.278154154976162 0.0 46 0.0 0.0 0.0 4.856406396131298 0.0 47 0.0 0.0 0.0 5.446064006934464 0.0 48 0.0 0.0 0.0 6.030018932913616 0.0 49 0.0 0.0 0.0 6.556947010652615 0.0 50 0.0 0.0 0.0 7.032550924975478 0.0 51 0.0 0.0 0.0 7.505873765368736 0.0 52 0.0 0.0 0.0 7.9917425123748265 0.0 53 0.0 0.0 0.0 8.5095462943954 0.0 54 0.0 0.0 0.0 9.051301352676841 0.0 55 0.0 0.0 0.0 9.57822943041584 0.0 56 0.0 0.0 0.0 10.154200597641369 0.0 57 0.0 0.0 0.0 10.76438787381099 0.0 58 0.0 0.0 0.0 11.298159173338808 0.0 59 0.0 0.0 0.0 11.851319601268278 0.0 60 0.0 0.0 0.0 12.370263920253656 0.0 61 0.0 0.0 0.0 12.802527429914004 0.0 62 0.0 0.0 0.0 13.266725974588837 0.0 63 0.0 0.0 0.0 13.7423298889117 0.0 64 0.0 0.0 0.0 14.24758776431944 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACTA 15 0.0022180353 70.0 1 AACTCGT 45 2.6651833E-8 54.444447 37 CTTCGCA 20 0.006930739 52.5 27 TGTGGCC 20 0.006930739 52.5 21 ACCCTGC 20 0.006930739 52.5 6 GATATTC 20 0.006930739 52.5 36 TGGTCTA 20 0.006930739 52.5 15 CGTATGC 390 0.0 50.25641 41 TATGCCG 385 0.0 50.000004 43 TCGTATG 385 0.0 50.000004 40 CTCGTAT 390 0.0 49.358974 39 ACTCGTA 50 6.113805E-8 48.999996 38 TTGAAAA 365 0.0 48.90411 58 CCGTCTT 380 0.0 48.81579 47 CTTGAAA 370 0.0 48.243244 57 ATCTCGT 320 0.0 48.125 37 TCTCGTA 320 0.0 48.125 38 CTGCTTG 380 0.0 47.894733 54 CGTCTTC 395 0.0 47.848103 48 GTATGCC 410 0.0 47.80488 42 >>END_MODULE