##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781150_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 146300 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.207060833902936 34.0 34.0 34.0 32.0 34.0 2 33.24195488721804 34.0 34.0 34.0 32.0 34.0 3 33.33293233082707 34.0 34.0 34.0 33.0 34.0 4 33.38359535201641 34.0 34.0 34.0 33.0 34.0 5 33.38687628161313 34.0 34.0 34.0 34.0 34.0 6 36.77094326725906 38.0 37.0 38.0 34.0 38.0 7 36.70501708817498 38.0 37.0 38.0 34.0 38.0 8 36.470123034859874 38.0 37.0 38.0 34.0 38.0 9 36.43531784005468 38.0 37.0 38.0 34.0 38.0 10-11 36.35933356117567 38.0 37.0 38.0 34.0 38.0 12-13 36.28277511961723 38.0 37.0 38.0 34.0 38.0 14-15 36.298045112781956 38.0 37.0 38.0 34.0 38.0 16-17 36.22777511961722 38.0 37.0 38.0 34.0 38.0 18-19 36.225095693779906 38.0 37.0 38.0 34.0 38.0 20-21 36.169039644565956 38.0 37.0 38.0 33.0 38.0 22-23 36.22813397129187 38.0 37.0 38.0 34.0 38.0 24-25 36.243831168831164 38.0 37.0 38.0 34.0 38.0 26-27 36.01794600136705 38.0 37.0 38.0 32.0 38.0 28-29 35.98262474367738 38.0 37.0 38.0 32.0 38.0 30-31 36.04512303485988 38.0 37.0 38.0 32.0 38.0 32-33 35.968885850991114 38.0 37.0 38.0 32.0 38.0 34-35 35.95972317156527 38.0 37.0 38.0 32.0 38.0 36-37 35.912286397812714 38.0 36.5 38.0 31.5 38.0 38-39 35.82547846889952 38.0 36.0 38.0 31.0 38.0 40-41 35.89816473000683 38.0 36.5 38.0 32.0 38.0 42-43 35.9253998632946 38.0 36.5 38.0 32.0 38.0 44-45 35.87580314422419 38.0 36.0 38.0 31.5 38.0 46-47 35.89913875598086 38.0 36.5 38.0 32.0 38.0 48-49 35.90767600820233 38.0 36.0 38.0 32.0 38.0 50-51 35.79504442925496 38.0 36.0 38.0 31.0 38.0 52-53 35.82334928229665 38.0 36.0 38.0 31.0 38.0 54-55 35.83245727956254 38.0 36.0 38.0 31.0 38.0 56-57 35.77935064935065 38.0 36.0 38.0 31.0 38.0 58-59 35.785352016404644 38.0 36.0 38.0 31.0 38.0 60-61 35.777036910457966 38.0 36.0 38.0 31.0 38.0 62-63 35.744309637730694 38.0 36.0 38.0 31.0 38.0 64-65 35.68727956254272 38.0 36.0 38.0 31.0 38.0 66-67 35.67609364319891 38.0 36.0 38.0 31.0 38.0 68-69 35.60393369788107 38.0 36.0 38.0 31.0 38.0 70-71 35.50085099111415 38.0 36.0 38.0 31.0 38.0 72-73 35.42430963773069 38.0 36.0 38.0 31.0 38.0 74-75 35.44326042378674 38.0 36.0 38.0 31.0 38.0 76 34.50595352016405 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 3.0 21 7.0 22 25.0 23 56.0 24 96.0 25 230.0 26 403.0 27 725.0 28 1253.0 29 2066.0 30 3052.0 31 4562.0 32 6414.0 33 9065.0 34 12218.0 35 16805.0 36 25817.0 37 63500.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.88926862611073 17.555707450444295 9.101161995898838 26.45386192754614 2 24.661654135338345 20.91045796308954 29.822282980177718 24.605604921394395 3 20.3568010936432 22.04101161995899 29.604921394395078 27.99726589200273 4 14.024606971975393 18.092959671907042 36.74572795625427 31.136705399863295 5 13.673274094326725 33.194121667805874 36.63431305536569 16.49829118250171 6 28.60218728639781 38.95352016404648 18.522214627477783 13.922077922077921 7 28.422419685577584 29.887901572112096 21.440874914559124 20.248803827751196 8 25.72043745727956 35.26110731373889 19.157894736842103 19.860560492139438 9 24.415584415584416 17.120984278879014 20.080656185919345 38.38277511961722 10-11 24.661995898838004 25.23069036226931 27.727272727272727 22.38004101161996 12-13 25.0228981544771 23.130553656869445 26.60287081339713 25.243677375256325 14-15 23.144565960355436 23.59876965140123 23.580656185919345 29.676008202323988 16-17 24.196855775803144 27.25085440874915 24.42071086807929 24.13157894736842 18-19 23.794600136705398 26.766575529733423 25.580997949419004 23.85782638414217 20-21 22.706766917293233 26.508544087491455 25.6596035543404 25.125085440874916 22-23 23.090567327409435 26.99350649350649 25.99521531100478 23.92071086807929 24-25 23.545796308954202 26.984278879015722 26.132604237867398 23.33732057416268 26-27 23.112781954887218 27.13192071086808 26.32775119617225 23.42754613807245 28-29 22.69788106630212 26.462747778537256 26.902255639097746 23.937115516062885 30-31 22.917976760082023 26.14217361585783 26.956596035543406 23.983253588516746 32-33 23.012303485987694 26.749487354750514 26.13568010936432 24.10252904989747 34-35 23.33697881066302 26.72693096377307 26.151059466848942 23.78503075871497 36-37 24.111756664388242 26.583048530416953 25.876965140123037 23.428229665071772 38-39 22.604921394395078 26.77272727272727 27.008885850991117 23.613465481886532 40-41 22.57928913192071 25.55775803144224 27.837662337662337 24.025290498974712 42-43 23.31852358168148 25.935064935064933 27.33526999316473 23.41114149008886 44-45 22.439507860560493 26.61449077238551 27.28298017771702 23.66302118933698 46-47 23.223855092276143 25.44053315105947 26.927204374572796 24.408407382091593 48-49 22.85645933014354 25.317156527682844 27.185235816814764 24.641148325358852 50-51 22.091592617908407 25.30451127819549 27.773069036226932 24.830827067669173 52-53 21.746753246753247 24.989747095010255 29.24436090225564 24.019138755980862 54-55 21.231373889268625 25.51537935748462 28.477785372522213 24.77546138072454 56-57 21.642857142857146 25.640806561859193 27.500683526999314 25.215652768284347 58-59 21.031442241968556 25.48838004101162 28.60423786739576 24.87593984962406 60-61 21.439166097060834 26.234791524265212 27.38004101161996 24.946001367054 62-63 20.028024606971975 26.742993848257008 27.907723855092275 25.321257689678745 64-65 20.40772385509228 26.9377990430622 26.913533834586467 25.74094326725906 66-67 20.449419002050583 26.813055365686942 26.784688995215312 25.95283663704716 68-69 20.295283663704716 27.284688995215312 26.2323991797676 26.18762816131237 70-71 20.772043745727956 26.38004101161996 26.173957621326043 26.673957621326043 72-73 20.641148325358852 25.471975393028025 26.14217361585783 27.744702665755298 74-75 20.54442925495557 25.7053998632946 25.969583048530414 27.78058783321941 76 21.13192071086808 25.55639097744361 25.76213260423787 27.549555707450445 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 2.0 11 1.5 12 1.0 13 3.0 14 4.0 15 12.5 16 27.0 17 32.0 18 48.0 19 64.5 20 92.5 21 120.0 22 137.0 23 209.0 24 313.5 25 363.0 26 476.0 27 634.5 28 829.5 29 979.0 30 1132.5 31 1431.0 32 1968.5 33 2361.0 34 2644.5 35 3277.5 36 4059.5 37 4492.0 38 5130.0 39 6331.0 40 7470.5 41 8305.5 42 8564.0 43 9128.5 44 9747.0 45 9913.0 46 10025.0 47 9890.5 48 9112.5 49 7825.5 50 7182.0 51 6670.5 52 5534.5 53 4588.5 54 4267.0 55 3954.0 56 3285.5 57 2531.0 58 2132.0 59 1880.5 60 1541.5 61 1352.5 62 1251.0 63 1219.0 64 1146.0 65 1127.5 66 1175.5 67 1201.0 68 1211.0 69 1177.5 70 1073.5 71 1013.0 72 1025.5 73 1016.0 74 931.0 75 868.0 76 811.0 77 696.0 78 593.5 79 549.0 80 477.0 81 353.0 82 255.5 83 210.0 84 173.0 85 112.0 86 68.5 87 49.0 88 43.0 89 24.0 90 12.0 91 9.5 92 6.0 93 3.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 146300.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.731373889268625 #Duplication Level Percentage of deduplicated Percentage of total 1 61.69140699980805 26.361585782638414 2 18.18894363043061 15.544771018455227 3 7.43969543796788 9.537252221462749 4 3.467912214473095 5.9275461380724535 5 2.0842664277944847 4.453178400546822 6 1.3100646234563953 3.358851674641148 7 1.0029432465288888 3.0 8 0.7454091752511357 2.5481886534518114 9 0.5934480772922133 2.2822966507177034 >10 3.4375199948813107 24.71701982228298 >50 0.0303922195917845 0.8462064251537936 >100 0.006398362019323054 0.35611756664388244 >500 0.0 0.0 >1k 0.0015995905048307635 1.0669856459330143 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGT 1561 1.0669856459330143 No Hit TCTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCG 177 0.12098427887901571 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002050580997949419 0.0 2 0.0 0.0 0.0 0.002050580997949419 0.0 3 0.0 0.0 0.0 0.002050580997949419 0.0 4 0.0 0.0 0.0 0.002734107997265892 0.0 5 0.0 0.0 0.0 0.002734107997265892 0.0 6 0.0 0.0 0.0 0.002734107997265892 0.0 7 0.0 0.0 0.0 0.002734107997265892 0.0 8 0.0 0.0 0.0 0.002734107997265892 0.0 9 0.0 0.0 0.0 0.004101161995898838 0.0 10 0.0 0.0 0.0 0.004784688995215311 0.0 11 0.0 0.0 0.0 0.004784688995215311 0.0 12 0.0 0.0 0.0 0.004784688995215311 0.0 13 0.0 0.0 0.0 0.004784688995215311 0.0 14 0.0 0.0 0.0 0.004784688995215311 0.0 15 0.0 0.0 0.0 0.004784688995215311 0.0 16 0.0 0.0 0.0 0.004784688995215311 0.0 17 0.0 0.0 0.0 0.004784688995215311 0.0 18 0.0 0.0 0.0 0.004784688995215311 0.0 19 0.0 0.0 0.0 0.005468215994531784 0.0 20 0.0 0.0 0.0 0.006151742993848257 0.0 21 0.0 0.0 0.0 0.00683526999316473 0.0 22 0.0 0.0 0.0 0.00683526999316473 0.0 23 0.0 0.0 0.0 0.007518796992481203 0.0 24 0.0 0.0 0.0 0.009569377990430622 0.0 25 0.0 0.0 0.0 0.009569377990430622 0.0 26 0.0 0.0 0.0 0.010252904989747095 0.0 27 0.0 0.0 0.0 0.012987012987012988 0.0 28 0.0 0.0 0.0 0.02460697197539303 0.0 29 0.0 0.0 0.0 0.03417634996582365 0.0 30 0.0 0.0 0.0 0.041695146958304855 0.0 31 0.0 0.0 0.0 0.05194805194805195 0.0 32 0.0 0.0 0.0 0.0710868079289132 0.0 33 0.0 0.0 0.0 0.0936431989063568 0.0 34 0.0 0.0 0.0 0.14080656185919344 0.0 35 0.0 0.0 0.0 0.18660287081339713 0.0 36 0.0 0.0 0.0 0.2631578947368421 0.0 37 0.0 0.0 0.0 0.38072453861927547 0.0 38 0.0 0.0 0.0 0.5393028024606972 0.0 39 0.0 0.0 0.0 0.7361585782638415 0.0 40 0.0 0.0 0.0 0.9788106630211894 0.0 41 0.0 0.0 0.0 1.2303485987696514 0.0 42 0.0 0.0 0.0 1.5584415584415585 0.0 43 0.0 0.0 0.0 1.9316473000683527 0.0 44 0.0 0.0 0.0 2.421736158578264 0.0 45 0.0 0.0 0.0 3.0054682159945316 0.0 46 0.0 0.0 0.0 3.6855775803144226 0.0 47 0.0 0.0 0.0 4.388243335611756 0.0 48 0.0 0.0 0.0 5.028708133971292 0.0 49 0.0 0.0 0.0 5.700615174299385 0.0 50 0.0 0.0 0.0 6.252221462747778 0.0 51 0.0 0.0 0.0 6.817498291182502 0.0 52 0.0 0.0 0.0 7.398496240601504 0.0 53 0.0 0.0 0.0 8.015037593984962 0.0 54 0.0 0.0 0.0 8.63362952836637 0.0 55 0.0 0.0 0.0 9.32946001367054 0.0 56 0.0 0.0 0.0 10.033492822966506 0.0 57 0.0 0.0 0.0 10.74436090225564 0.0 58 0.0 0.0 0.0 11.444976076555024 0.0 59 0.0 0.0 0.0 12.150375939849624 0.0 60 0.0 0.0 0.0 12.829801777170198 0.0 61 0.0 0.0 0.0 13.436090225563909 0.0 62 0.0 0.0 0.0 14.03691045796309 0.0 63 0.0 0.0 0.0 14.630211893369788 0.0 64 0.0 0.0 0.0 15.257006151742994 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTATA 15 0.002221015 70.0 48 TTCGTAC 15 0.002221015 70.0 64 ACTCGTA 15 0.002221015 70.0 38 CAGTCGT 15 0.002221015 70.0 1 ATCTCGT 240 0.0 61.25 37 AGATCTC 245 0.0 60.0 35 TCTCGTA 240 0.0 59.791664 38 CGCAGAT 255 0.0 59.019604 32 CTCGTAT 285 0.0 58.94737 39 CAGATCT 250 0.0 58.8 34 GATCTCG 250 0.0 58.8 36 CCGTCTT 300 0.0 58.333332 47 CGTATGC 295 0.0 58.13559 41 TCGTATG 295 0.0 58.13559 40 GCCGTCT 295 0.0 58.13559 46 TATGCCG 300 0.0 57.166668 43 CGCAGAA 25 2.384122E-4 56.000004 32 TCGCAGA 325 0.0 55.999996 31 CGTCTTC 295 0.0 55.76271 48 GTATGCC 305 0.0 55.08197 42 >>END_MODULE