##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781148_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 155686 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.797464126511056 34.0 32.0 34.0 21.0 34.0 2 30.78877998021659 34.0 32.0 34.0 21.0 34.0 3 30.667156969798185 34.0 32.0 34.0 21.0 34.0 4 30.869795614249195 34.0 32.0 34.0 21.0 34.0 5 30.900093778502885 34.0 32.0 34.0 21.0 34.0 6 33.404834089128116 37.0 34.0 38.0 21.0 38.0 7 33.32311190473132 37.0 34.0 38.0 21.0 38.0 8 33.08783705663965 37.0 33.0 38.0 21.0 38.0 9 33.54063949231145 37.0 34.0 38.0 21.0 38.0 10-11 33.371391775753764 37.0 34.0 38.0 21.0 38.0 12-13 33.32723880117673 37.0 34.0 38.0 21.0 38.0 14-15 33.224753670850305 37.0 34.0 38.0 21.0 38.0 16-17 33.17595994501754 37.0 33.5 38.0 21.0 38.0 18-19 33.204016417661194 37.0 33.5 38.0 21.0 38.0 20-21 33.158787559575046 37.0 33.5 38.0 21.0 38.0 22-23 33.22855940803926 37.0 34.0 38.0 21.0 38.0 24-25 33.212013283146845 37.0 34.0 38.0 21.0 38.0 26-27 33.14055534858626 37.0 34.0 38.0 21.0 38.0 28-29 33.229378364143216 37.0 34.0 38.0 21.0 38.0 30-31 33.30111249566435 37.0 34.0 38.0 21.0 38.0 32-33 33.25909844173529 37.0 34.0 38.0 21.0 38.0 34-35 33.28359004663233 37.0 34.0 38.0 21.0 38.0 36-37 33.11375139704276 37.0 33.5 38.0 21.0 38.0 38-39 33.130583353673416 37.0 33.5 38.0 21.0 38.0 40-41 33.14848477062806 37.0 33.5 38.0 21.0 38.0 42-43 33.212716621918474 37.0 34.0 38.0 21.0 38.0 44-45 33.23609701578819 37.0 34.0 38.0 21.0 38.0 46-47 33.17439911103118 37.0 34.0 38.0 21.0 38.0 48-49 33.1513784155287 37.0 34.0 38.0 21.0 38.0 50-51 33.009262232956075 37.0 32.5 38.0 21.0 38.0 52-53 33.088068291304296 37.0 33.0 38.0 21.0 38.0 54-55 33.0570282491682 37.0 33.0 38.0 21.0 38.0 56-57 33.028939660598894 37.0 33.0 38.0 21.0 38.0 58-59 33.01746785195843 37.0 32.5 38.0 21.0 38.0 60-61 33.00481738884678 37.0 33.0 38.0 21.0 38.0 62-63 32.964951890343386 37.0 32.5 38.0 21.0 38.0 64-65 32.97561437765759 37.0 32.5 38.0 21.0 38.0 66-67 32.872117595673345 37.0 32.0 38.0 21.0 38.0 68-69 32.611204604139104 37.0 31.5 38.0 16.0 38.0 70-71 32.80285639042688 37.0 32.0 38.0 21.0 38.0 72-73 32.78074136402759 37.0 32.0 38.0 21.0 38.0 74-75 32.79933327338361 37.0 31.0 38.0 21.0 38.0 76 31.43332091517542 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 16.0 14 79.0 15 201.0 16 441.0 17 914.0 18 1324.0 19 1614.0 20 1860.0 21 1998.0 22 2166.0 23 2403.0 24 2695.0 25 3060.0 26 3605.0 27 4197.0 28 4700.0 29 5425.0 30 6152.0 31 7004.0 32 8171.0 33 9825.0 34 11927.0 35 15129.0 36 21642.0 37 39137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.873283403774266 17.56034582428735 9.016867284148864 25.549503487789526 2 24.205773158793985 19.928574181365054 30.83642716750382 25.029225492337144 3 20.315249926133372 20.849016610356745 29.283301003301514 29.552432460208365 4 14.51447143609573 16.362421797721055 35.62748095525609 33.49562581092712 5 14.31149878601801 32.5385712266999 35.76557943553049 17.384350551751602 6 30.640520021068046 35.542052593039834 18.60604036329535 15.211387022596764 7 29.650707192682706 28.72255694153617 21.71421964723867 19.91251621854245 8 26.547024138329718 33.22649435402027 19.442981385609496 20.783500122040518 9 24.899477152730494 15.69184127024909 21.07960895648934 38.329072620531065 10-11 25.976324139614356 23.671364156057706 27.07790038924502 23.274411315082926 12-13 25.926223295607826 22.05496961833434 26.194712434001772 25.82409465205606 14-15 24.21123286615367 23.17260383078761 23.526842490654264 29.089320812404456 16-17 24.52950168929769 25.91337692534974 24.48068548231697 25.0764359030356 18-19 23.649525326618964 25.781380470947934 25.94870444355947 24.620389758873632 20-21 23.628649974949578 26.066248731420938 25.776563082101152 24.528538211528332 22-23 24.067353519263133 25.439024703570006 25.918515473452974 24.575106303713888 24-25 23.97646544968719 25.57937129863957 25.694988630962325 24.749174620710917 26-27 23.41540022866539 25.76692830440759 26.01133049856763 24.80634096835939 28-29 23.869198258032192 25.50422003262978 26.80395154349139 23.82263016584664 30-31 24.0467993268502 25.505825828912045 26.153925208432355 24.293449635805402 32-33 23.389386328892773 26.223616767082458 26.12791130865974 24.25908559536503 34-35 24.11038885962771 25.33529026373598 26.286563981347072 24.267756895289235 36-37 24.28831108770217 25.286474056755264 25.806109733694743 24.619105121847824 38-39 23.514317279652634 25.712652390067188 26.652685533702453 24.12034479657773 40-41 23.56152769035109 25.107909510167904 26.949436686664185 24.381126112816823 42-43 23.746194262811045 25.205220764872887 26.49403286101512 24.55455211130095 44-45 22.92049381447272 25.306707089911747 26.86625643924309 24.90654265637244 46-47 23.27987102244261 25.12300399522115 26.806520817543007 24.790604164793237 48-49 22.679624372133652 25.05845098467428 27.487057281964983 24.774867361227084 50-51 22.928843955140472 25.093457343627556 27.25646493583238 24.721233765399585 52-53 22.39796770422517 25.05652402913557 27.410621378929385 25.13488688770988 54-55 21.951235178500315 25.41076268900222 27.682322109887853 24.95568002260961 56-57 21.873835797695364 25.32565548604242 27.5519314517683 25.248577264493914 58-59 22.19788548745552 25.15704687640507 27.451087445242344 25.193980190897065 60-61 22.145536528653828 25.072903151214625 27.18388294387421 25.597677376257337 62-63 21.708759939878988 24.866718908572384 27.52527523348278 25.89924591806585 64-65 22.127872769548965 24.8847038269337 27.26866898757756 25.718754415939777 66-67 22.251519083283018 24.948614518967666 26.798170676875248 26.001695720874068 68-69 21.875120434721172 25.11850776563082 26.750960266176794 26.255411533471218 70-71 22.558226173194765 25.130390658119552 26.766375910486488 25.5450072581992 72-73 22.546985599218942 24.651863366005937 26.354649743714916 26.44650129106021 74-75 22.427514355818765 24.968205233611243 26.46609200570379 26.138188404866202 76 22.38736944876225 25.029225492337144 26.17897563043562 26.404429428464987 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 2.0 11 1.5 12 0.0 13 0.5 14 3.0 15 10.5 16 26.5 17 37.0 18 40.5 19 62.0 20 101.0 21 122.0 22 142.5 23 229.0 24 384.0 25 473.0 26 585.0 27 740.0 28 975.5 29 1168.0 30 1292.0 31 1615.0 32 2133.0 33 2452.0 34 2760.5 35 3491.0 36 4246.5 37 4580.0 38 5024.5 39 6034.0 40 7029.5 41 7900.0 42 8340.0 43 8441.5 44 8859.0 45 9002.5 46 8830.0 47 8724.0 48 8289.5 49 7678.5 50 7396.0 51 6971.0 52 5990.5 53 5238.0 54 5041.0 55 4739.0 56 4183.0 57 3710.5 58 3492.0 59 3242.5 60 2812.0 61 2496.5 62 2362.0 63 2262.0 64 2065.0 65 1911.0 66 1804.5 67 1755.0 68 1697.5 69 1577.0 70 1455.5 71 1397.0 72 1328.0 73 1194.5 74 1097.5 75 1065.0 76 956.5 77 800.5 78 662.0 79 571.0 80 501.5 81 375.0 82 267.0 83 216.0 84 181.0 85 121.5 86 78.5 87 60.0 88 55.5 89 38.5 90 18.5 91 9.5 92 8.0 93 8.0 94 5.5 95 2.5 96 2.0 97 1.5 98 0.5 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 155686.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.86123350847218 #Duplication Level Percentage of deduplicated Percentage of total 1 78.69708216408678 50.25692740516167 2 11.81718515836376 15.093200416222396 3 3.9648773422648684 7.59605873360482 4 1.6525351276867526 4.221317266806264 5 0.9142753688784285 2.919337641149493 6 0.6075053056133892 2.3277622907647446 7 0.4787624593906843 2.140205284996724 8 0.37013568289027693 1.8909857019899028 9 0.28967140400108626 1.6648895854476315 >10 1.2059583798517446 11.814806726359468 >50 0.0020116069722297654 0.07450894749688476 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 6.423185129041789E-4 0.0 15 0.0 0.0 0.0 6.423185129041789E-4 0.0 16 0.0 0.0 0.0 6.423185129041789E-4 0.0 17 0.0 0.0 0.0 6.423185129041789E-4 0.0 18 0.0 0.0 0.0 0.0019269555387125368 0.0 19 0.0 0.0 0.0 0.0025692740516167155 0.0 20 0.0 0.0 0.0 0.0025692740516167155 0.0 21 0.0 0.0 0.0 0.0038539110774250735 0.0 22 0.0 0.0 0.0 0.0038539110774250735 0.0 23 0.0 0.0 0.0 0.0038539110774250735 0.0 24 0.0 0.0 0.0 0.0044962295903292525 0.0 25 0.0 0.0 0.0 0.0057808666161376105 0.0 26 0.0 0.0 0.0 0.007707822154850147 0.0 27 0.0 0.0 0.0 0.014773325796796116 0.0 28 0.0 0.0 0.0 0.02376578497745462 0.0 29 0.0 0.0 0.0 0.037896792261346554 0.0 30 0.0 0.0 0.0 0.04817388846781342 0.0 31 0.0 0.0 0.0 0.06487416980332207 0.0 32 0.0 0.0 0.0 0.07836285857430983 0.0 33 0.0 0.0 0.0 0.10469791760338117 0.0 34 0.0 0.0 0.0 0.1432370283776319 0.0 35 0.0 0.0 0.0 0.21838829438742083 0.0 36 0.0 0.0 0.0 0.33079403414565217 0.0 37 0.0 0.0 0.0 0.49715452898783447 0.0 38 0.0 0.0 0.0 0.7200390529655846 0.0 39 0.0 0.0 0.0 0.9795357321788729 0.0 40 0.0 0.0 0.0 1.2660097889341366 0.0 41 0.0 0.0 0.0 1.5865267268733219 0.0 42 0.0 0.0 0.0 1.906401346299603 0.0 43 0.0 0.0 0.0 2.2924347725550147 0.0 44 0.0 0.0 0.0 2.7054455763524015 0.0 45 0.0 0.0 0.0 3.167272587130506 0.0 46 0.0 0.0 0.0 3.741505337666842 0.0 47 0.0 0.0 0.0 4.313168814151561 0.0 48 0.0 0.0 0.0 4.877766786994335 0.0 49 0.0 0.0 0.0 5.450072581991958 0.0 50 0.0 0.0 0.0 5.935665377747517 0.0 51 0.0 0.0 0.0 6.461081921303136 0.0 52 0.0 0.0 0.0 6.939609213416749 0.0 53 0.0 0.0 0.0 7.407859409323896 0.0 54 0.0 0.0 0.0 7.862620916460054 0.0 55 0.0 0.0 0.0 8.384825867451152 0.0 56 0.0 0.0 0.0 8.90253458885192 0.0 57 0.0 0.0 0.0 9.439512865639813 0.0 58 0.0 0.0 0.0 10.02466503089552 0.0 59 0.0 0.0 0.0 10.507688552599463 0.0 60 0.0 0.0 0.0 11.051090014516399 0.0 61 0.0 0.0 0.0 11.573937284020401 0.0 62 0.0 0.0 0.0 12.062099353827575 0.0 63 0.0 0.0 0.0 12.544480557018614 0.0 64 0.0 0.0 0.0 13.005022930770911 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAT 15 0.0022212823 70.0 37 CGCGATA 15 0.0022212823 70.0 38 ACTGATC 25 2.3845978E-4 55.999996 24 CTTCGTG 20 0.006940807 52.5 7 GAGTCGA 20 0.006940807 52.5 58 GTGCGTT 20 0.006940807 52.5 31 ATTTGCG 20 0.006940807 52.5 36 TACTGAT 35 2.0790874E-5 50.000004 23 CGCAGTA 30 5.863664E-4 46.666664 18 CTACCCG 30 5.863664E-4 46.666664 10 CATGTAA 30 5.863664E-4 46.666664 35 CGCAAAG 30 5.863664E-4 46.666664 12 CCGCAGT 30 5.863664E-4 46.666664 17 TACCCGC 35 0.0012524271 40.000004 11 CCGTGCG 40 0.0024130347 35.0 9 GCAGTAC 45 0.0042971354 31.111113 19 CACTACG 45 0.0042971354 31.111113 45 GTATAGA 45 0.0042971354 31.111113 1 GTCCAAG 80 2.4505553E-6 30.625 1 CCTATAC 60 4.964754E-4 29.166666 3 >>END_MODULE