##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781147_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 70204 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03170759500883 34.0 34.0 34.0 27.0 34.0 2 32.20233889806848 34.0 34.0 34.0 27.0 34.0 3 32.20837843997493 34.0 34.0 34.0 27.0 34.0 4 32.33755911344083 34.0 34.0 34.0 31.0 34.0 5 32.29036807019543 34.0 34.0 34.0 30.0 34.0 6 35.28477009856988 38.0 36.0 38.0 29.0 38.0 7 35.20568628568173 38.0 36.0 38.0 27.0 38.0 8 35.253974132528064 38.0 36.0 38.0 27.0 38.0 9 35.474559854139365 38.0 37.0 38.0 31.0 38.0 10-11 35.40642271095664 38.0 36.0 38.0 31.0 38.0 12-13 35.37448008660475 38.0 36.0 38.0 30.5 38.0 14-15 35.30357956811578 38.0 36.0 38.0 29.0 38.0 16-17 35.28245541564583 38.0 36.0 38.0 29.0 38.0 18-19 35.30402826049797 38.0 36.0 38.0 29.5 38.0 20-21 35.25468634265854 38.0 36.0 38.0 28.0 38.0 22-23 35.30467637171671 38.0 36.0 38.0 29.0 38.0 24-25 35.30404250470059 38.0 36.0 38.0 29.0 38.0 26-27 35.24159592046037 38.0 36.0 38.0 27.0 38.0 28-29 35.31021736653182 38.0 36.0 38.0 30.0 38.0 30-31 35.40192154293203 38.0 36.0 38.0 31.0 38.0 32-33 35.35146857728904 38.0 36.0 38.0 29.5 38.0 34-35 35.38449376103925 38.0 36.0 38.0 31.0 38.0 36-37 35.26455045296564 38.0 36.0 38.0 28.5 38.0 38-39 35.257335764343914 38.0 36.0 38.0 27.0 38.0 40-41 35.26022021537234 38.0 36.0 38.0 27.5 38.0 42-43 35.338278445672614 38.0 36.0 38.0 30.5 38.0 44-45 35.32589311150362 38.0 36.0 38.0 30.5 38.0 46-47 35.316798188137426 38.0 36.0 38.0 29.0 38.0 48-49 35.2605976867415 38.0 36.0 38.0 27.0 38.0 50-51 35.17454133667597 38.0 36.0 38.0 27.0 38.0 52-53 35.232244601447206 38.0 36.0 38.0 27.0 38.0 54-55 35.1916130135035 38.0 36.0 38.0 27.0 38.0 56-57 35.119409150475754 38.0 36.0 38.0 27.0 38.0 58-59 35.120363512050595 38.0 36.0 38.0 27.0 38.0 60-61 35.11140390860919 38.0 36.0 38.0 27.0 38.0 62-63 35.105513930830156 38.0 36.0 38.0 27.0 38.0 64-65 35.127991282548 38.0 36.0 38.0 27.0 38.0 66-67 35.02453563899493 38.0 36.0 38.0 27.0 38.0 68-69 34.76682952538317 38.0 35.5 38.0 26.0 38.0 70-71 34.981617856532395 38.0 36.0 38.0 27.0 38.0 72-73 34.9928351660874 38.0 36.0 38.0 27.0 38.0 74-75 35.01258475300553 38.0 36.0 38.0 27.0 38.0 76 33.80304541051792 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 10.0 14 33.0 15 110.0 16 177.0 17 287.0 18 385.0 19 379.0 20 376.0 21 358.0 22 314.0 23 386.0 24 418.0 25 540.0 26 627.0 27 731.0 28 910.0 29 1150.0 30 1409.0 31 1703.0 32 2341.0 33 3179.0 34 4497.0 35 6768.0 36 11884.0 37 31229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.940459233092135 19.23822004444191 10.017947695288019 25.80337302717794 2 22.454560993675575 20.377756253204947 32.077944276679396 25.089738476440086 3 19.594325109680362 21.612728619451882 29.01686513588969 29.776081134978067 4 13.939376673693808 16.25833285852658 36.3070480314512 33.49524243632842 5 14.137371089966383 33.384137655974016 35.62190188593243 16.856589368127175 6 30.795966041820975 36.3070480314512 18.1813002108142 14.715685715913624 7 29.374394621389094 28.469887755683438 22.50868896359182 19.64702865933565 8 26.15235599111162 33.86844054469831 19.84502307560823 20.134180388581846 9 24.430231895618483 15.9093498945929 21.26944333656202 38.3909748732266 10-11 25.62104723377585 24.25858925417355 27.294028830266083 22.826334681784513 12-13 25.353256224716542 22.531479687767078 26.737080508233145 25.37818357928323 14-15 23.012933735969458 23.97228078172184 24.18736824112586 28.82741724118284 16-17 23.5634721668281 26.816135832716085 25.41379408580708 24.20659791464874 18-19 22.842003304655005 26.794769528801776 26.540510512221527 23.82271665432169 20-21 22.87975044157028 26.731382827189332 26.358184718819437 24.030682012420947 22-23 23.192410688849638 26.11674548458777 26.66087402427212 24.02996980229047 24-25 22.86336960856931 26.583955330180615 26.405902797561392 24.14677226368868 26-27 22.28149393196969 26.598911742920635 27.010569198336277 24.109025126773403 28-29 22.803543957609254 26.3624579796023 27.67292461967979 23.161073443108656 30-31 23.039997720927584 26.596062902398725 26.687938009230244 23.67600136744345 32-33 22.581334396900463 26.795481738932253 26.75987123240841 23.863312631758873 34-35 23.27858811463734 26.078286137542023 26.922967352287618 23.720158395533016 36-37 23.42530340151558 26.07116403623725 26.685801378838814 23.817731183408352 38-39 22.156144949005753 26.845336448065638 27.255569483220327 23.74294911970828 40-41 23.0086604751866 25.858925417355138 27.625206540937835 23.507207566520428 42-43 22.65326762007863 25.944390633012365 27.132357130647826 24.26998461626118 44-45 22.240897954532503 25.82830038174463 27.547575636715855 24.38322602700701 46-47 22.355563785539285 25.94082958235998 27.640162953677855 24.063443678422882 48-49 21.94176969973221 25.86034983761609 28.020483163352516 24.177397299299187 50-51 22.062133211782804 25.79197766509031 27.71708164776936 24.42880747535753 52-53 21.77653694946157 25.528459916813855 28.12090479174976 24.574098341974814 54-55 21.518004672098456 25.810495128482707 28.113070480314512 24.558429719104325 56-57 21.102786166030427 25.889550452965644 28.487693008945357 24.519970372058573 58-59 21.555039598883255 25.740698535695973 28.121617001880235 24.58264486354054 60-61 21.323571306478264 25.561933792946274 28.151529827360267 24.9629650732152 62-63 21.002364537633184 25.566207053729133 28.252663665887983 25.1787647427497 64-65 21.637655974018575 25.626032704689187 27.724203749074128 25.012107572218106 66-67 21.678964161586233 25.804797447438894 27.18719731069455 25.329041080280323 68-69 21.29009743034585 25.551250640989114 27.119537348299243 26.03911458036579 70-71 21.481681955444135 25.737137485043586 27.52407270241012 25.257107857102156 72-73 21.91684234516552 25.431599339069 26.887356845763776 25.76420147000171 74-75 21.683237422369096 25.851091105919892 26.5782576491368 25.887413822574214 76 22.075665204261867 25.67659962395305 26.760583442538888 25.4871517292462 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.5 12 2.0 13 3.5 14 3.0 15 5.0 16 13.5 17 18.0 18 23.0 19 40.5 20 65.5 21 78.0 22 103.5 23 158.0 24 241.0 25 295.0 26 358.5 27 476.5 28 600.5 29 670.0 30 795.0 31 979.5 32 1204.5 33 1370.0 34 1497.0 35 1831.5 36 2247.5 37 2456.0 38 2630.0 39 3121.5 40 3631.5 41 3957.5 42 4091.0 43 4143.0 44 4217.5 45 4121.5 46 4003.0 47 3945.5 48 3649.0 49 3256.5 50 3103.0 51 2895.0 52 2453.5 53 2054.5 54 1889.0 55 1747.5 56 1496.0 57 1228.0 58 1070.0 59 1030.5 60 896.0 61 758.5 62 716.0 63 703.0 64 660.0 65 656.0 66 645.5 67 609.0 68 612.5 69 637.0 70 646.0 71 634.0 72 617.0 73 574.0 74 537.5 75 527.0 76 484.0 77 393.0 78 300.5 79 256.0 80 245.0 81 193.0 82 132.5 83 113.0 84 100.5 85 71.0 86 44.0 87 34.0 88 28.5 89 15.5 90 6.0 91 3.5 92 3.0 93 4.0 94 4.0 95 2.5 96 2.0 97 1.5 98 0.5 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 70204.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.81254629365849 #Duplication Level Percentage of deduplicated Percentage of total 1 75.56756994351773 48.977266252635175 2 14.067822685215708 18.23542818073044 3 4.709786598096745 9.157597857671927 4 1.9999560449220897 5.184889749871802 5 1.076899408804202 3.4898296393367896 6 0.6900947231928969 2.683607771636944 7 0.5362519505065823 2.4329098057090763 8 0.349442869387486 1.811862571933223 9 0.2681259752532911 1.5640134465272633 >10 0.7340498011032724 6.462594723947353 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0014244202609537918 0.0 10 0.0 0.0 0.0 0.0014244202609537918 0.0 11 0.0 0.0 0.0 0.0014244202609537918 0.0 12 0.0 0.0 0.0 0.0014244202609537918 0.0 13 0.0 0.0 0.0 0.0014244202609537918 0.0 14 0.0 0.0 0.0 0.0014244202609537918 0.0 15 0.0 0.0 0.0 0.0014244202609537918 0.0 16 0.0 0.0 0.0 0.0014244202609537918 0.0 17 0.0 0.0 0.0 0.0014244202609537918 0.0 18 0.0 0.0 0.0 0.0014244202609537918 0.0 19 0.0 0.0 0.0 0.0014244202609537918 0.0 20 0.0 0.0 0.0 0.0014244202609537918 0.0 21 0.0 0.0 0.0 0.0014244202609537918 0.0 22 0.0 0.0 0.0 0.0028488405219075836 0.0 23 0.0 0.0 0.0 0.0028488405219075836 0.0 24 0.0 0.0 0.0 0.004273260782861376 0.0 25 0.0 0.0 0.0 0.004273260782861376 0.0 26 0.0 0.0 0.0 0.004273260782861376 0.0 27 0.0 0.0 0.0 0.008546521565722751 0.0 28 0.0 0.0 0.0 0.018517463392399295 0.0 29 0.0 0.0 0.0 0.029912825480029628 0.0 30 0.0 0.0 0.0 0.04415702808956755 0.0 31 0.0 0.0 0.0 0.05127912939433651 0.0014244202609537918 32 0.0 0.0 0.0 0.06267449148196684 0.0014244202609537918 33 0.0 0.0 0.0 0.08973847644008888 0.0014244202609537918 34 0.0 0.0 0.0 0.12250014244202609 0.0014244202609537918 35 0.0 0.0 0.0 0.17805253261922396 0.0014244202609537918 36 0.0 0.0 0.0 0.27776195088598943 0.0014244202609537918 37 0.0 0.0 0.0 0.44014586063472166 0.0014244202609537918 38 0.0 0.0 0.0 0.6438379579511139 0.0014244202609537918 39 0.0 0.0 0.0 0.8760184604865819 0.0014244202609537918 40 0.0 0.0 0.0 1.14950715058971 0.0014244202609537918 41 0.0 0.0 0.0 1.4415133040852373 0.0014244202609537918 42 0.0 0.0 0.0 1.799042789584639 0.0014244202609537918 43 0.0 0.0 0.0 2.1978804626517006 0.0014244202609537918 44 0.0 0.0 0.0 2.6650903082445443 0.0014244202609537918 45 0.0 0.0 0.0 3.236282832887015 0.0014244202609537918 46 0.0 0.0 0.0 3.8373881830095153 0.0014244202609537918 47 0.0 0.0 0.0 4.468406358612045 0.0014244202609537918 48 0.0 0.0 0.0 5.066662868212638 0.0014244202609537918 49 0.0 0.0 0.0 5.6350065523332 0.0014244202609537918 50 0.0 0.0 0.0 6.139251324710843 0.0014244202609537918 51 0.0 0.0 0.0 6.680531023873284 0.0014244202609537918 52 0.0 0.0 0.0 7.237479345906216 0.0014244202609537918 53 0.0 0.0 0.0 7.784456726112472 0.0014244202609537918 54 0.0 0.0 0.0 8.419748162497863 0.0014244202609537918 55 0.0 0.0 0.0 9.089225685146145 0.0014244202609537918 56 0.0 0.0 0.0 9.691755455529599 0.0014244202609537918 57 0.0 0.0 0.0 10.307105008261637 0.0014244202609537918 58 0.0 0.0 0.0 10.909634778645092 0.0014244202609537918 59 0.0 0.0 0.0 11.351205059540767 0.0014244202609537918 60 0.0 0.0 0.0 11.869694034527948 0.0014244202609537918 61 0.0 0.0 0.0 12.469374964389493 0.0014244202609537918 62 0.0 0.0 0.0 13.049114010597687 0.0014244202609537918 63 0.0 0.0 0.0 13.560480884280098 0.0014244202609537918 64 0.0 0.0 0.0 14.08324312005014 0.0014244202609537918 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGGT 15 0.0022161894 70.0 32 GGTAACT 15 0.0022161894 70.0 30 AACTTGT 15 0.0022161894 70.0 33 GGGTAAC 15 0.0022161894 70.0 29 AGTTGTG 15 0.0022161894 70.0 35 GTTATTG 25 2.3755521E-4 55.999996 52 ACCATAG 20 0.0069250134 52.5 53 CGTTGGT 20 0.0069250134 52.5 42 TGGCGGC 20 0.0069250134 52.5 46 TGTTCCG 20 0.0069250134 52.5 37 GTTCCGT 20 0.0069250134 52.5 38 TCCGTTG 20 0.0069250134 52.5 40 ATTGGAT 20 0.0069250134 52.5 55 GTCTAGG 35 0.001247733 40.000004 1 ACACTGA 35 0.001247733 40.000004 6 AAATCAG 40 0.0024040448 35.0 5 GGCGTGA 40 0.0024040448 35.0 25 GTGTAAA 50 1.6942093E-4 35.0 1 GGATTGC 40 0.0024040448 35.0 9 TCCTAAA 45 0.004281225 31.111109 2 >>END_MODULE