##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781146_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 58627 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.11201323622222 34.0 34.0 34.0 27.0 34.0 2 32.411721561737764 34.0 34.0 34.0 31.0 34.0 3 32.44750712129224 34.0 34.0 34.0 31.0 34.0 4 32.57396762583792 34.0 34.0 34.0 31.0 34.0 5 32.58055162297235 34.0 34.0 34.0 31.0 34.0 6 35.69606154161052 38.0 37.0 38.0 31.0 38.0 7 35.60015010148908 38.0 37.0 38.0 31.0 38.0 8 35.416565746157914 38.0 36.0 38.0 31.0 38.0 9 35.70834257253484 38.0 37.0 38.0 31.0 38.0 10-11 35.68469305951183 38.0 37.0 38.0 31.0 38.0 12-13 35.658135330137995 38.0 37.0 38.0 31.0 38.0 14-15 35.65789653231447 38.0 37.0 38.0 31.0 38.0 16-17 35.63868183601413 38.0 37.0 38.0 31.0 38.0 18-19 35.645751957289306 38.0 37.0 38.0 31.0 38.0 20-21 35.61469118324322 38.0 37.0 38.0 31.0 38.0 22-23 35.635432479915394 38.0 37.0 38.0 31.0 38.0 24-25 35.648429904310305 38.0 37.0 38.0 31.0 38.0 26-27 35.595212103638254 38.0 37.0 38.0 31.0 38.0 28-29 35.652685622665324 38.0 37.0 38.0 31.0 38.0 30-31 35.71335732682894 38.0 37.0 38.0 31.0 38.0 32-33 35.69476521056851 38.0 37.0 38.0 31.0 38.0 34-35 35.71387756494448 38.0 37.0 38.0 31.0 38.0 36-37 35.61811963770958 38.0 37.0 38.0 31.0 38.0 38-39 35.62466952086922 38.0 37.0 38.0 31.0 38.0 40-41 35.60919883330206 38.0 37.0 38.0 31.0 38.0 42-43 35.68335408600133 38.0 37.0 38.0 31.0 38.0 44-45 35.663243897862756 38.0 37.0 38.0 31.0 38.0 46-47 35.65737629419892 38.0 37.0 38.0 31.0 38.0 48-49 35.60777457485459 38.0 37.0 38.0 31.0 38.0 50-51 35.55000255854811 38.0 37.0 38.0 31.0 38.0 52-53 35.60670851314241 38.0 37.0 38.0 31.0 38.0 54-55 35.58726354751224 38.0 37.0 38.0 31.0 38.0 56-57 35.53390076244733 38.0 37.0 38.0 31.0 38.0 58-59 35.530224981663736 38.0 37.0 38.0 31.0 38.0 60-61 35.53584525901036 38.0 37.0 38.0 31.0 38.0 62-63 35.51144523854197 38.0 37.0 38.0 31.0 38.0 64-65 35.50569703378989 38.0 37.0 38.0 31.0 38.0 66-67 35.41939720606547 38.0 37.0 38.0 31.0 38.0 68-69 35.16153819912327 38.0 36.0 38.0 27.5 38.0 70-71 35.370639807597186 38.0 36.5 38.0 30.0 38.0 72-73 35.382801439609736 38.0 36.5 38.0 30.0 38.0 74-75 35.41526088662221 38.0 37.0 38.0 31.0 38.0 76 34.28930356320467 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 7.0 14 49.0 15 112.0 16 217.0 17 295.0 18 311.0 19 334.0 20 292.0 21 255.0 22 236.0 23 259.0 24 279.0 25 304.0 26 406.0 27 467.0 28 542.0 29 707.0 30 900.0 31 1153.0 32 1543.0 33 2067.0 34 3049.0 35 4910.0 36 9687.0 37 30245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.789943200231974 18.975898476811025 9.198833302062189 27.035325020894806 2 22.44699541167039 19.462022617565285 32.69653913725758 25.394442833506748 3 19.443259931430912 21.882409128899656 28.89283094819793 29.781499991471506 4 13.923618810445697 15.828884302454501 36.7305166561482 33.51698023095161 5 13.444317464649394 33.834240196496495 35.97318641581524 16.748255923038872 6 30.404080031384854 37.00172275572689 17.788732154126937 14.805465058761321 7 29.222030804919235 28.921827826769235 22.054684701588005 19.801456666723524 8 25.558189912497653 33.76942364439593 19.86797891756358 20.80440752554284 9 24.637112593173793 14.849813225988026 21.072202227642553 39.440871953195625 10-11 25.061831579306464 23.94289320620192 28.248929674040973 22.746345540450648 12-13 24.832415098845242 22.632916574274653 26.992682552407594 25.541985774472515 14-15 23.224794036877206 23.579579374690844 24.050352226789702 29.145274361642247 16-17 23.555699592338 27.00973953980248 24.968870998004334 24.465689869855186 18-19 22.699438825114708 26.78032305934126 26.422126324048644 24.098111791495384 20-21 22.686646084568544 26.656659900728336 26.48012008119126 24.176573933511865 22-23 22.878537192761016 25.95902911627748 27.04300066522251 24.119433025738992 24-25 22.914356866290277 26.281406178040832 26.521909700308733 24.28232725536016 26-27 22.278131236461014 26.208061132242822 27.076261790642537 24.437545840653623 28-29 22.673000494652634 26.23620516144439 27.484776638750063 23.606017705152915 30-31 22.799222201374793 26.51593975472052 26.765824620055607 23.91901342384908 32-33 22.49646067511556 26.727446398417108 27.006328142323504 23.769764784143824 34-35 23.165094580995106 25.970969007453903 27.106964367953335 23.75697204359766 36-37 23.252085216709027 25.977791802411858 26.623398775308303 24.146724205570813 38-39 22.386443106418543 26.830641172156174 27.223804731608304 23.55911098981698 40-41 22.657649205997238 25.922356593378478 27.545328944001913 23.874665256622375 42-43 22.601361147594112 26.121923345898644 27.070291845054328 24.206423661452913 44-45 22.074300237092125 26.306991659133168 27.419960086649496 24.198748017125215 46-47 22.33868354171286 26.154331621948934 27.377317618162277 24.129667218175925 48-49 21.940402886042268 26.24132225766285 27.60417555051427 24.21409930578061 50-51 22.168966517133747 25.980350350521093 27.26900574820475 24.581677384140413 52-53 22.162143722175788 25.85583434253842 27.544476094632163 24.437545840653623 54-55 21.507155406212156 26.571374963753904 27.49245228307776 24.42901734695618 56-57 21.808211233731896 26.13812748392379 27.627202483497364 24.426458798846948 58-59 21.93699148856329 25.903593907244105 27.53338905282549 24.626025551367118 60-61 21.400549234994116 26.09633786480632 27.64425947089225 24.858853429307317 62-63 21.02017841608815 25.868627083084583 28.13464785849523 24.976546642332032 64-65 21.792007095706754 26.32404864652805 27.297149777406315 24.58679448035888 66-67 21.620584372388148 26.091220768587853 27.39949170177563 24.88870315724837 68-69 21.143841574701074 26.16627151312535 27.244273116482166 25.445613795691408 70-71 21.9352857898238 26.246439353881318 27.028502225936858 24.789772630358026 72-73 21.878144882050933 25.713408497791118 27.11122861480205 25.297218005355894 74-75 21.97878110768076 26.133863237075065 26.996946799256317 24.890408855987857 76 21.89776041755505 25.756050966278337 26.989271154928616 25.356917461237998 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 1.0 14 2.5 15 7.0 16 12.5 17 15.0 18 22.0 19 36.5 20 56.5 21 69.0 22 76.5 23 118.5 24 176.0 25 199.0 26 255.0 27 329.5 28 436.5 29 525.0 30 609.0 31 715.0 32 959.5 33 1182.0 34 1282.0 35 1558.5 36 1862.0 37 1989.0 38 2126.0 39 2530.5 40 3039.0 41 3376.5 42 3473.0 43 3521.5 44 3562.0 45 3520.0 46 3486.0 47 3451.5 48 3174.5 49 2821.0 50 2710.0 51 2481.5 52 2041.0 53 1714.5 54 1600.0 55 1514.5 56 1346.5 57 1138.5 58 1013.0 59 888.0 60 702.0 61 623.5 62 606.0 63 586.5 64 536.0 65 501.5 66 517.0 67 536.0 68 513.0 69 503.5 70 503.5 71 490.0 72 495.0 73 470.5 74 404.0 75 367.0 76 360.0 77 308.0 78 232.5 79 202.0 80 189.5 81 143.0 82 99.0 83 89.0 84 70.5 85 43.5 86 23.0 87 11.0 88 9.5 89 9.0 90 8.0 91 6.0 92 6.0 93 4.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 58627.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.774830709400106 #Duplication Level Percentage of deduplicated Percentage of total 1 75.37429013939081 47.31608303341464 2 13.539657093171753 16.998993637743702 3 4.556693747792299 8.581370358367305 4 2.219927723283428 5.574223480648848 5 1.2852213134798793 4.033977518890613 6 0.8260196179659267 3.111194500827264 7 0.5407167893921692 2.3760383441076636 8 0.41844414857484447 2.101420847049994 9 0.3043230171453414 1.7193443294045405 >10 0.9319892400076082 8.100363313831512 >50 0.002717169795940548 0.08699063571392021 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0017056987394886314 0.0 15 0.0 0.0 0.0 0.0017056987394886314 0.0 16 0.0 0.0 0.0 0.0017056987394886314 0.0 17 0.0 0.0 0.0 0.0017056987394886314 0.0 18 0.0 0.0 0.0 0.0017056987394886314 0.0 19 0.0 0.0 0.0 0.0017056987394886314 0.0 20 0.0 0.0 0.0 0.003411397478977263 0.0 21 0.0 0.0 0.0 0.003411397478977263 0.0 22 0.0 0.0 0.0 0.0051170962184658945 0.0 23 0.0 0.0 0.0 0.0051170962184658945 0.0 24 0.0 0.0 0.0 0.013645589915909051 0.0 25 0.0 0.0 0.0 0.013645589915909051 0.0 26 0.0 0.0 0.0 0.015351288655397683 0.0 27 0.0 0.0 0.0 0.015351288655397683 0.0 28 0.0 0.0 0.0 0.023879782352840842 0.0 29 0.0 0.0 0.0 0.03411397478977263 0.0 30 0.0 0.0 0.0 0.03581967352926126 0.0 31 0.0 0.0 0.0 0.04434816722670442 0.0 32 0.0 0.0017056987394886314 0.0 0.05799375714261347 0.0 33 0.0 0.0017056987394886314 0.0 0.07163934705852253 0.0 34 0.0 0.0017056987394886314 0.0 0.09551912941136337 0.0 35 0.0 0.0017056987394886314 0.0 0.1398672966380678 0.0 36 0.0 0.0017056987394886314 0.0 0.19274395756221535 0.0 37 0.0 0.0017056987394886314 0.0 0.28996878571306733 0.0 38 0.0 0.0017056987394886314 0.0 0.3991335050403398 0.0 39 0.0 0.0017056987394886314 0.0 0.5219438142835212 0.0 40 0.0 0.0017056987394886314 0.0 0.694219386971873 0.0 41 0.0 0.0017056987394886314 0.0 0.8630835621812476 0.0 42 0.0 0.0017056987394886314 0.0 1.0814130008357923 0.0 43 0.0 0.0017056987394886314 0.0 1.304859535708803 0.0 44 0.0 0.0017056987394886314 0.0 1.5862998277244273 0.0 45 0.0 0.0017056987394886314 0.0 1.9240281781431763 0.0 46 0.0 0.0017056987394886314 0.0 2.300987599570164 0.0 47 0.0 0.0017056987394886314 0.0 2.6643014310812423 0.0 48 0.0 0.0017056987394886314 0.0 3.013969672676412 0.0 49 0.0 0.0017056987394886314 0.0 3.4045746840193085 0.0 50 0.0 0.0017056987394886314 0.0 3.7798284067068075 0.0 51 0.0 0.0017056987394886314 0.0 4.132908045780955 0.0 52 0.0 0.0017056987394886314 0.0 4.506456069728965 0.0 53 0.0 0.0017056987394886314 0.0 4.891943984853395 0.0 54 0.0 0.0017056987394886314 0.0 5.304723079809644 0.0 55 0.0 0.0017056987394886314 0.0 5.765261739471574 0.0 56 0.0 0.0017056987394886314 0.0 6.2684428676207204 0.0 57 0.0 0.0017056987394886314 0.0 6.684633360055947 0.0 58 0.0 0.0017056987394886314 0.0 7.158817609633786 0.0 59 0.0 0.0017056987394886314 0.0 7.557951114674126 0.0 60 0.0 0.0017056987394886314 0.0 7.9741416071093525 0.0 61 0.0 0.0017056987394886314 0.0 8.347689631057362 0.0 62 0.0 0.0017056987394886314 0.0 8.755351629795145 0.0 63 0.0 0.0017056987394886314 0.0 9.142545243659065 0.0 64 0.0 0.0017056987394886314 0.0 9.548501543657359 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATATCG 15 0.0022143545 70.0 29 GTCCTAA 15 0.0022143545 70.0 20 ATCGGTT 15 0.0022143545 70.0 25 AGTAGCG 15 0.0022143545 70.0 2 CTAAACT 30 8.28169E-6 58.333332 23 ACCGTAT 25 2.3722957E-4 55.999996 11 ATCCTCG 20 0.0069193244 52.5 34 AACGTGT 20 0.0069193244 52.5 26 AACCGTA 20 0.0069193244 52.5 10 GTACCTA 20 0.0069193244 52.5 1 AATTTCG 20 0.0069193244 52.5 47 CGGTTGG 20 0.0069193244 52.5 52 TAGAACC 20 0.0069193244 52.5 4 GGTCCTA 20 0.0069193244 52.5 19 CAACCGT 20 0.0069193244 52.5 9 ACCTGCA 20 0.0069193244 52.5 35 ATCCGGA 20 0.0069193244 52.5 1 AAATTTC 20 0.0069193244 52.5 46 CACAGGT 20 0.0069193244 52.5 15 TGGGGCG 20 0.0069193244 52.5 56 >>END_MODULE