##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781146_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 55732 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83666475274528 34.0 34.0 34.0 31.0 34.0 2 32.87603172324697 34.0 34.0 34.0 31.0 34.0 3 32.99694968779158 34.0 34.0 34.0 31.0 34.0 4 33.13633101270365 34.0 34.0 34.0 31.0 34.0 5 33.10198808583937 34.0 34.0 34.0 31.0 34.0 6 36.12665972870165 38.0 36.0 38.0 32.0 38.0 7 36.00008971506495 38.0 36.0 38.0 32.0 38.0 8 35.6313966841312 38.0 36.0 38.0 31.0 38.0 9 35.72491566783894 38.0 36.0 38.0 31.0 38.0 10-11 35.63607981052178 38.0 36.0 38.0 31.0 38.0 12-13 35.55784827388215 38.0 36.0 38.0 31.0 38.0 14-15 35.60268786334601 38.0 36.0 38.0 31.0 38.0 16-17 35.47417103279983 38.0 36.0 38.0 31.0 38.0 18-19 35.50216213306538 38.0 36.0 38.0 31.0 38.0 20-21 35.3742284504414 37.0 35.5 38.0 31.0 38.0 22-23 35.48144692456758 37.0 36.0 38.0 31.0 38.0 24-25 35.472870164358 37.0 36.0 38.0 31.0 38.0 26-27 35.21213127108304 37.0 35.5 38.0 29.0 38.0 28-29 35.174890547620755 37.0 35.0 38.0 27.0 38.0 30-31 35.22960776573602 37.0 35.0 38.0 30.0 38.0 32-33 35.16520132060576 37.0 35.0 38.0 28.0 38.0 34-35 35.16582932606043 37.0 35.0 38.0 28.5 38.0 36-37 35.11763439316731 37.0 35.0 38.0 27.0 38.0 38-39 35.025039474628585 37.0 35.0 38.0 27.0 38.0 40-41 35.04659800473695 37.0 35.0 38.0 27.0 38.0 42-43 35.094757051604105 37.0 35.0 38.0 27.0 38.0 44-45 35.01857998995192 37.0 35.0 38.0 27.0 38.0 46-47 35.03677420512452 37.0 35.0 38.0 27.0 38.0 48-49 35.03096964042202 37.0 35.0 38.0 27.0 38.0 50-51 34.89970752888825 37.0 35.0 38.0 27.0 38.0 52-53 34.931206488193496 37.0 35.0 38.0 27.0 38.0 54-55 34.95379674154884 37.0 35.0 38.0 27.0 38.0 56-57 34.878579631091654 37.0 35.0 38.0 27.0 38.0 58-59 34.86270903610134 37.0 35.0 38.0 27.0 38.0 60-61 34.83865642718725 37.0 34.5 38.0 27.0 38.0 62-63 34.830474413263474 37.0 35.0 38.0 27.0 38.0 64-65 34.76535024761358 37.0 34.0 38.0 27.0 38.0 66-67 34.741575755400845 37.0 34.0 38.0 27.0 38.0 68-69 34.649743414914234 37.0 34.0 38.0 27.0 38.0 70-71 34.59721524438384 37.0 34.0 38.0 26.5 38.0 72-73 34.50226081963683 37.0 34.0 38.0 25.0 38.0 74-75 34.51650757195148 37.0 34.0 38.0 25.5 38.0 76 33.506351826598724 37.0 34.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 8.0 22 11.0 23 51.0 24 72.0 25 163.0 26 296.0 27 576.0 28 887.0 29 1302.0 30 1880.0 31 2680.0 32 3697.0 33 4729.0 34 5978.0 35 7614.0 36 10450.0 37 15337.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.16435799899519 19.35333381181368 9.502619679896648 25.97968850929448 2 23.4317806646092 21.050742840737815 31.339266489628937 24.17821000502404 3 20.695471183521136 23.029857173616595 29.42474700351683 26.849924639345442 4 14.449508361444055 17.84432641929233 35.97574104643652 31.7304241728271 5 14.133711332807005 34.909926074786476 35.5469030359578 15.409459556448718 6 30.91401708174837 38.451876839158835 16.993827603531184 13.640278475561615 7 29.614942941218693 29.09818416708534 21.725400129189694 19.56147276250628 8 26.193210363884305 35.67250412689299 18.542309624632168 19.59197588459054 9 25.28708820785186 15.300007177205197 20.175123806789635 39.2377808081533 10-11 25.264659441613436 24.971291179214813 27.874470681116776 21.889578698054976 12-13 25.61993109883012 22.581281848848057 26.921696691308405 24.877090361013423 14-15 23.538541591904114 23.395894638627716 23.70451446206847 29.3610493073997 16-17 24.363920189478215 27.773092657719083 24.338799971291177 23.524187181511518 18-19 24.159369841383764 26.620254073063947 25.629799755975025 23.59057632957726 20-21 23.115983635972153 26.622945525012558 25.78590396899447 24.475166870020814 22-23 23.43716356850642 26.69561472762506 26.13758702361301 23.72963468025551 24-25 23.779875116629583 27.1199669848561 26.008397330079667 23.09176056843465 26-27 23.212875906122157 27.58738247326491 26.124129763869945 23.075611856742984 28-29 23.298105217828176 26.892987870523218 26.648065743199602 23.160841168449007 30-31 23.691057202325414 27.76232684992464 25.986865714490776 22.55975023325917 32-33 22.93296490346659 27.685171894064453 26.573602239288018 22.80826096318094 34-35 23.414734802267997 26.936948252350533 26.37802339768894 23.27029354769253 36-37 24.403394818057848 26.749443766597285 25.699777506638917 23.147383908705947 38-39 22.82261537357353 26.852616091294053 27.01500035886026 23.30976817627216 40-41 23.093554869733726 25.51137587023613 27.81525873824733 23.579810521782818 42-43 23.94315653484533 25.737457833919468 27.29401421086629 23.02537142036891 44-45 22.61447642288093 27.153161558888968 27.187253283571376 23.045108734658722 46-47 23.552896002296706 25.88907629369124 26.641785688652835 23.916242015359217 48-49 23.373465872389293 25.84511591186392 27.06075504198665 23.720663173760137 50-51 22.65395105146056 25.89176774563985 27.400775138161197 24.053506064738393 52-53 22.496052537142035 25.427940859829185 28.777004234551068 23.299002368477716 54-55 22.352508433216105 25.492535706595852 28.012631881145484 24.14232397904256 56-57 22.857604248905478 25.513170171535204 27.30298571736166 24.32623986219766 58-59 22.29867939424388 25.46562118710974 28.454927151367258 23.780772267279122 60-61 22.646773846264264 26.67498026268571 26.909136582214888 23.76910930883514 62-63 21.080348812172538 27.091258164070908 27.467164286226943 24.361228737529604 64-65 21.78730352400775 27.58738247326491 26.636402784755614 23.988911217971722 66-67 21.36205411612718 27.62775425249408 26.61576831981626 24.394423311562477 68-69 21.09290892126606 28.026089140888537 26.204873322328286 24.67612861551712 70-71 21.652730926577192 27.154058709538504 26.521567501614875 24.671642862269433 72-73 21.763977607119788 26.819421517261176 26.064020670350967 25.352580205268065 74-75 21.419471757697554 26.807758558817195 26.43364673796024 25.339122945525013 76 21.70207421230173 26.91451948611211 26.401349314576905 24.98205698700926 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 2.0 14 3.0 15 4.5 16 12.5 17 18.0 18 18.0 19 24.5 20 38.0 21 45.0 22 67.0 23 116.5 24 191.5 25 239.0 26 244.0 27 313.0 28 422.0 29 467.0 30 560.0 31 690.0 32 908.5 33 1090.0 34 1171.5 35 1401.0 36 1709.5 37 1870.0 38 2067.0 39 2549.0 40 3011.5 41 3295.5 42 3402.0 43 3473.0 44 3499.5 45 3358.5 46 3262.0 47 3245.0 48 3014.5 49 2671.0 50 2541.0 51 2335.0 52 1908.5 53 1578.5 54 1469.0 55 1393.5 56 1188.5 57 989.5 58 920.0 59 800.0 60 666.5 61 602.5 62 552.0 63 530.5 64 506.0 65 523.0 66 513.5 67 484.0 68 499.0 69 481.5 70 467.0 71 485.0 72 482.0 73 441.5 74 380.5 75 357.0 76 334.5 77 281.5 78 228.5 79 206.0 80 165.0 81 110.5 82 94.0 83 91.0 84 69.0 85 38.0 86 19.5 87 10.0 88 10.0 89 6.0 90 3.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 55732.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.16478863130697 #Duplication Level Percentage of deduplicated Percentage of total 1 75.7492259182456 47.84683844111103 2 13.638042212311452 17.228881073709896 3 4.46836917308184 8.467307830330869 4 2.06232423373008 5.210650972511304 5 1.224327472090447 3.8667192995047728 6 0.8181120927193706 3.100552644800115 7 0.5368860608470869 2.3738606186750877 8 0.36928670851916034 1.866073351037106 9 0.27270403090645684 1.5502763224000575 >10 0.8578814305598955 7.476853513241943 >50 0.0 0.0 >100 0.0 0.0 >500 0.002840666988608925 1.0119859326778153 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT 564 1.0119859326778153 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0017943012990741406 0.0 20 0.0 0.0 0.0 0.003588602598148281 0.0 21 0.0 0.0 0.0 0.003588602598148281 0.0 22 0.0 0.0 0.0 0.003588602598148281 0.0 23 0.0 0.0 0.0 0.003588602598148281 0.0 24 0.0 0.0 0.0 0.005382903897222422 0.0 25 0.0 0.0 0.0 0.007177205196296562 0.0 26 0.0 0.0 0.0 0.008971506495370703 0.0 27 0.0 0.0 0.0 0.008971506495370703 0.0 28 0.0 0.0 0.0 0.016148711691667265 0.0 29 0.0 0.0 0.0 0.025120218187037968 0.0 30 0.0 0.0 0.0 0.025120218187037968 0.0 31 0.0 0.0 0.0 0.035886025981482814 0.0 32 0.0 0.0 0.0 0.04665183377592765 0.0 33 0.0 0.0 0.0 0.061006244168520775 0.0 34 0.0 0.0 0.0 0.08433216105648461 0.0 35 0.0 0.0 0.0 0.1238067896361157 0.0 36 0.0 0.0 0.0 0.17404722601019162 0.0 37 0.0 0.0 0.0 0.28170530395464005 0.0 38 0.0 0.0 0.0 0.39654058709538503 0.0 39 0.0 0.0 0.0 0.5203473767315008 0.0 40 0.0 0.0 0.0 0.6997775066389148 0.0 41 0.0 0.0 0.0 0.8612646235555874 0.0 42 0.0 0.0 0.0 1.072992176846336 0.0 43 0.0 0.0 0.0 1.2918969353333811 0.0 44 0.0 0.0 0.0 1.5736022392880213 0.0 45 0.0 0.0 0.0 1.8965764731213666 0.0 46 0.0 0.0 0.0 2.2662025407306396 0.0 47 0.0 0.0 0.0 2.6322400057417643 0.0 48 0.0 0.0 0.0 2.974951553864925 0.0 49 0.0 0.0 0.0 3.344577621474198 0.0 50 0.0 0.0 0.0 3.701643579989952 0.0 51 0.0 0.0 0.0 4.051532333309409 0.0 52 0.0 0.0 0.0 4.413981195722386 0.0 53 0.0 0.0 0.0 4.781812962032585 0.0 54 0.0 0.0 0.0 5.190913658221489 0.0 55 0.0 0.0 0.0 5.6502547907844685 0.0 56 0.0 0.0 0.0 6.140099045431709 0.0 57 0.0 0.0 0.0 6.56534845331228 0.0 58 0.0 0.0 0.0 7.02468958587526 0.0 59 0.0 0.0 0.0 7.439173185961387 0.0 60 0.0 0.0 0.0 7.8410966769539945 0.0 61 0.0 0.0 0.0 8.20354553936697 0.0 62 0.0 0.0 0.0 8.605469030359577 0.0 63 0.0 0.0 0.0 8.976889399267925 0.0 64 0.0 0.0 0.0 9.389578698054978 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACT 15 0.0022137763 70.0 34 GTTCTGC 15 0.0022137763 70.0 24 CATGTAC 15 0.0022137763 70.0 3 GGACCGT 15 0.0022137763 70.0 6 GCTCGGA 20 7.862675E-5 70.0 11 CCGTCTT 120 0.0 58.333332 47 TATGCCG 120 0.0 55.416664 43 ATGCCGT 120 0.0 55.416664 44 GCCGTCT 120 0.0 55.416664 46 CGTCTTC 130 0.0 53.846153 48 CGTATGC 125 0.0 53.199997 41 GTATGCC 125 0.0 53.199997 42 CTTGAAA 125 0.0 53.199997 57 TCGCCCC 20 0.0069175316 52.5 38 CGAAATT 20 0.0069175316 52.5 48 CCAGGAC 20 0.0069175316 52.5 3 ATCAAAT 20 0.0069175316 52.5 28 AATGCAG 20 0.0069175316 52.5 58 GTAGCCC 20 0.0069175316 52.5 9 GTTCGTA 20 0.0069175316 52.5 25 >>END_MODULE