##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781145_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 56785 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.990420005283084 34.0 34.0 34.0 31.0 34.0 2 33.01569076340583 34.0 34.0 34.0 31.0 34.0 3 33.08889671568196 34.0 34.0 34.0 31.0 34.0 4 33.20179624900942 34.0 34.0 34.0 32.0 34.0 5 33.16116932288457 34.0 34.0 34.0 32.0 34.0 6 36.31853482433741 38.0 37.0 38.0 34.0 38.0 7 36.22220656863608 38.0 37.0 38.0 34.0 38.0 8 35.9150303777406 38.0 36.0 38.0 31.0 38.0 9 35.92839658360482 38.0 36.0 38.0 32.0 38.0 10-11 35.82287575944352 38.0 36.0 38.0 31.0 38.0 12-13 35.75055912652989 38.0 36.0 38.0 31.0 38.0 14-15 35.787153297525755 38.0 36.0 38.0 31.0 38.0 16-17 35.69770185788501 38.0 36.0 38.0 31.0 38.0 18-19 35.71436118693317 38.0 36.0 38.0 31.0 38.0 20-21 35.619670687681605 38.0 36.0 38.0 31.0 38.0 22-23 35.70061635995421 38.0 36.0 38.0 31.0 38.0 24-25 35.697103108215195 38.0 36.0 38.0 31.0 38.0 26-27 35.421475741833234 38.0 36.0 38.0 31.0 38.0 28-29 35.379184643832 38.0 36.0 38.0 31.0 38.0 30-31 35.456837192920666 38.0 36.0 38.0 31.0 38.0 32-33 35.35117548648411 38.0 36.0 38.0 31.0 38.0 34-35 35.33861935370256 38.0 36.0 38.0 31.0 38.0 36-37 35.28536585365853 38.0 36.0 38.0 30.5 38.0 38-39 35.19166153033372 38.0 36.0 38.0 27.5 38.0 40-41 35.27871797129524 38.0 36.0 38.0 30.5 38.0 42-43 35.279589680373334 38.0 36.0 38.0 30.5 38.0 44-45 35.237069648674826 38.0 36.0 38.0 29.0 38.0 46-47 35.27187637580347 38.0 36.0 38.0 30.0 38.0 48-49 35.26157435942591 38.0 36.0 38.0 30.0 38.0 50-51 35.134445716298316 37.0 35.0 38.0 27.0 38.0 52-53 35.17103988729418 37.5 35.0 38.0 27.0 38.0 54-55 35.21021396495553 37.5 35.5 38.0 28.0 38.0 56-57 35.10068680109184 37.0 35.0 38.0 27.0 38.0 58-59 35.11392092982302 37.0 35.0 38.0 27.0 38.0 60-61 35.1190983534384 37.0 35.0 38.0 27.0 38.0 62-63 35.05498811305802 37.0 35.0 38.0 27.0 38.0 64-65 34.97869155586862 37.0 35.0 38.0 27.0 38.0 66-67 34.9676234921194 37.0 35.0 38.0 27.0 38.0 68-69 34.87724751254733 37.0 35.0 38.0 27.0 38.0 70-71 34.77206128378973 37.0 35.0 38.0 27.0 38.0 72-73 34.670476358193184 37.0 35.0 38.0 27.0 38.0 74-75 34.70354847230783 37.0 35.0 38.0 27.0 38.0 76 33.68190543277274 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 6.0 22 18.0 23 32.0 24 73.0 25 137.0 26 309.0 27 503.0 28 769.0 29 1192.0 30 1790.0 31 2489.0 32 3355.0 33 4521.0 34 5715.0 35 7421.0 36 10347.0 37 18106.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.906225235537555 19.24804085585982 10.145284846350268 25.700449062252357 2 23.19626661970591 21.070705291890466 32.23210354847231 23.50092453993132 3 20.968565642335125 22.766575680197235 29.941005547239584 26.323853130228052 4 15.229373954389363 18.689794840186668 35.96724487100467 30.113586334419303 5 14.914149863520295 34.102315752399406 35.32799154706348 15.655542837016817 6 31.163159285022452 36.93404948489918 18.032931231839395 13.86985999823897 7 29.231311085674033 29.071057497578582 21.822664436030642 19.87496698071674 8 25.991018754952893 35.63617152417011 19.253323941181648 19.119485779695342 9 25.006603856652287 16.22435502333363 21.093598661618383 37.6754424583957 10-11 25.866866249889934 25.178304129611696 27.153297525755043 21.80153209474333 12-13 25.858941621907196 22.657391916879458 26.23668222241789 25.246984238795456 14-15 23.92797393677908 23.516773795896803 23.448974200933346 29.10627806639077 16-17 25.43277273927974 26.997446508761115 24.45011886941974 23.119661882539404 18-19 24.64647354054768 25.830765166857443 25.732147574183323 23.790613718411553 20-21 23.526459452320157 26.103724575151887 25.405476798450294 24.96433917407766 22-23 24.17011534736286 26.424231751342788 25.699568548032055 23.706084353262305 24-25 24.573390860262393 26.794928238091043 25.76736814299551 22.86431275865105 26-27 24.112881923043055 26.949898740864665 25.917936074667608 23.019283261424672 28-29 23.74042440785419 26.48146517566259 26.5589504270494 23.21915998943383 30-31 24.797041472219778 26.583604825217925 26.000704411376248 22.618649291186053 32-33 23.569604649115085 26.318570044906224 25.68900237738839 24.422822928590296 34-35 25.099938364004583 26.051774236153914 26.012151096240206 22.836136303601304 36-37 24.369992075372018 26.021836752663557 25.585101699392442 24.023069472571983 38-39 23.561680021132343 26.103724575151887 26.96222593994893 23.37236946376684 40-41 23.622435502333364 25.175662586950782 27.512547327639343 23.689354583076515 42-43 24.607730914854276 25.19327287135687 26.928766399577352 23.2702298142115 44-45 22.944439552698775 26.32209210178744 27.49845910011447 23.23500924539931 46-47 24.142819406533416 24.898300607554813 26.915558686272785 24.04332129963899 48-49 23.69992075372017 24.821695870388307 26.890023773883946 24.58835960200757 50-51 22.982301664171874 24.972263802060404 27.452672360658624 24.592762173109094 52-53 22.82997270405917 24.84811129699745 29.108039094831383 23.213876904112002 54-55 22.168706524610375 25.03389979748173 28.28211675618561 24.515276921722286 56-57 22.62921546182971 25.05503213876904 27.145372897772297 25.170379501628954 58-59 21.930967685128113 24.804085585982214 28.715329752575503 24.549616976314166 60-61 22.65210883155763 25.46535176543101 27.458835960200755 24.423703442810602 62-63 20.986175926741215 26.904112001408826 27.177071409703267 24.932640662146692 64-65 21.73197147133926 26.64788236330017 26.537818085762083 25.082328079598486 66-67 21.558510169939243 26.7297701857885 26.19529805406357 25.516421590208683 68-69 21.491591089196092 26.890023773883946 26.080831205423966 25.537553931495992 70-71 22.025182706700715 26.573919168794575 25.753279915470635 25.64761820903407 72-73 21.95650259751695 25.687241348947786 25.728625517302106 26.62763053623316 74-75 21.706436558950426 26.115171260015853 25.59038478471427 26.58800739631945 76 22.306947257198203 25.769129171436116 25.342960288808662 26.580963282557015 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 3.5 15 8.0 16 16.5 17 24.0 18 25.5 19 36.0 20 62.5 21 80.0 22 85.5 23 113.0 24 190.5 25 246.0 26 278.5 27 317.5 28 385.0 29 446.0 30 518.5 31 692.0 32 909.5 33 1026.0 34 1135.5 35 1325.5 36 1612.0 37 1818.0 38 1988.0 39 2351.5 40 2713.5 41 3026.5 42 3171.0 43 3277.0 44 3489.0 45 3572.5 46 3550.0 47 3305.5 48 3028.0 49 2768.5 50 2542.0 51 2363.0 52 1991.0 53 1694.5 54 1591.0 55 1481.5 56 1303.5 57 1158.5 58 1082.0 59 917.0 60 733.0 61 665.5 62 617.0 63 615.0 64 598.5 65 600.0 66 606.5 67 597.0 68 585.5 69 585.0 70 548.5 71 501.0 72 513.5 73 487.5 74 434.0 75 419.0 76 395.0 77 349.0 78 286.0 79 245.0 80 209.5 81 154.5 82 106.5 83 78.0 84 72.5 85 50.5 86 26.5 87 19.0 88 11.0 89 3.0 90 2.5 91 1.0 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 56785.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.08884388482874 #Duplication Level Percentage of deduplicated Percentage of total 1 73.79483600837405 46.55630888438848 2 15.296580600139567 19.300871709078102 3 4.926727145847871 9.324645593026327 4 2.322400558269365 5.860702650347803 5 1.1500348918353105 3.6277185876551905 6 0.8234473133286812 3.117020339878489 7 0.43265875785066293 1.9107158580611077 8 0.3098394975575715 1.5637932552610725 9 0.2288904396371249 1.2996389891696751 >10 0.7062107466852757 5.980452584309236 >50 0.005582693649685973 0.2201285550761645 >100 0.0 0.0 >500 0.0027913468248429866 1.238002993748349 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT 703 1.238002993748349 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG 64 0.1127058201989962 No Hit CTTATACACATCTCCGAGCCCACGAGACAGACCAGCACCTCGTATGCCGT 61 0.10742273487716826 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.001761028440609316 0.0 20 0.0 0.0 0.0 0.001761028440609316 0.0 21 0.0 0.0 0.0 0.001761028440609316 0.0 22 0.0 0.0 0.0 0.001761028440609316 0.0 23 0.0 0.0 0.0 0.003522056881218632 0.0 24 0.0 0.0 0.0 0.003522056881218632 0.0 25 0.0 0.0 0.0 0.003522056881218632 0.0 26 0.0 0.0 0.0 0.003522056881218632 0.0 27 0.0 0.0 0.0 0.010566170643655896 0.0 28 0.0 0.0 0.0 0.02113234128731179 0.0 29 0.0 0.0 0.0 0.02993748349035837 0.0 30 0.0 0.0 0.0 0.03698159725279563 0.0 31 0.0 0.0 0.0 0.05635291009949811 0.0 32 0.0 0.0 0.0 0.0774852513868099 0.0 33 0.0 0.0 0.0 0.10213964955534031 0.0 34 0.0 0.0 0.0 0.14264330368935457 0.0 35 0.0 0.0 0.0 0.22012855507616447 0.0 36 0.0 0.0 0.0 0.30641894866602093 0.0 37 0.0 0.0 0.0 0.43673505327111034 0.0 38 0.0 0.0 0.0 0.6286871532975258 0.0 39 0.0 0.0 0.0 0.8118341111208947 0.0 40 0.0 0.0 0.0 1.0953596900589944 0.0 41 0.0 0.0 0.0 1.4229109800123272 0.0 42 0.0 0.0 0.0 1.762789469049925 0.0 43 0.0 0.0 0.0 2.151976754424584 0.0 44 0.0 0.0 0.0 2.7031786563352997 0.0 45 0.0 0.0 0.0 3.300167297701858 0.0 46 0.0 0.0 0.0 3.858413313375011 0.0 47 0.0 0.0 0.0 4.485339438231928 0.0 48 0.0 0.0 0.0 5.098177335563969 0.0 49 0.0 0.0 0.0 5.644096152152858 0.0 50 0.0 0.0 0.0 6.209386281588448 0.0 51 0.0 0.0 0.0 6.7781984679052565 0.0 52 0.0 0.0 0.0 7.364620938628159 0.0 53 0.0 0.0 0.0 7.907017698335828 0.0 54 0.0 0.0 0.0 8.54627102227701 0.0 55 0.0 0.0 0.0 9.159108919609052 0.0 56 0.0 0.0 0.0 9.708549793079158 0.0 57 0.0 0.0 0.0 10.331953861054856 0.0 58 0.0 0.0 0.0 10.96768512811482 0.0 59 0.0 0.0 0.0 11.522409086906753 0.0 60 0.0 0.0 0.0 12.107070529189047 0.0 61 0.0 0.0 0.0 12.637140089812451 0.0 62 0.0 0.0 0.0 13.25702210090693 0.0 63 0.0 0.0 0.0 13.794135775292771 0.0 64 0.0 0.0 0.0 14.331249449678612 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 15 0.0022139922 70.0 39 ATATCGT 15 0.0022139922 70.0 37 TCTATAC 30 1.0068288E-7 70.0 3 GCATATC 15 0.0022139922 70.0 35 CAGCATA 25 2.3716534E-4 56.000004 33 TCCATAC 20 0.0069182026 52.5 2 ACAAAGT 20 0.0069182026 52.5 2 CATATCG 20 0.0069182026 52.5 36 CGTCTTC 140 0.0 52.5 48 CTCTTGC 20 0.0069182026 52.5 1 CATTCCC 20 0.0069182026 52.5 25 CCGTCTT 140 0.0 52.5 47 ACCTAAG 20 0.0069182026 52.5 38 CGCTCAT 20 0.0069182026 52.5 65 CTAAACA 20 0.0069182026 52.5 4 ATAACAT 20 0.0069182026 52.5 36 GTAAGAC 20 0.0069182026 52.5 3 TATCGTA 20 0.0069182026 52.5 38 GCCGTCT 140 0.0 52.5 46 CGTATGC 155 0.0 51.935482 41 >>END_MODULE