##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781144_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 61030 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.351663116500085 34.0 34.0 34.0 31.0 34.0 2 32.50101589382271 34.0 34.0 34.0 31.0 34.0 3 32.51120760281829 34.0 34.0 34.0 31.0 34.0 4 32.56418155005735 34.0 34.0 34.0 31.0 34.0 5 32.61443552351302 34.0 34.0 34.0 31.0 34.0 6 35.90188431918728 38.0 37.0 38.0 32.0 38.0 7 35.83680157299689 38.0 37.0 38.0 32.0 38.0 8 35.63357365230215 38.0 37.0 38.0 31.0 38.0 9 35.91815500573488 38.0 37.0 38.0 32.0 38.0 10-11 35.81872849418319 38.0 37.0 38.0 31.5 38.0 12-13 35.78675241684418 38.0 37.0 38.0 31.0 38.0 14-15 35.75782402097329 38.0 37.0 38.0 31.0 38.0 16-17 35.72258725217107 38.0 37.0 38.0 31.0 38.0 18-19 35.747067016221536 38.0 37.0 38.0 31.0 38.0 20-21 35.707348844830406 38.0 37.0 38.0 31.0 38.0 22-23 35.733598230378504 38.0 37.0 38.0 31.5 38.0 24-25 35.72970670162215 38.0 37.0 38.0 31.0 38.0 26-27 35.70208913649025 38.0 37.0 38.0 31.0 38.0 28-29 35.76387842044896 38.0 37.0 38.0 31.0 38.0 30-31 35.81837620842209 38.0 37.0 38.0 31.5 38.0 32-33 35.807537276749144 38.0 37.0 38.0 31.5 38.0 34-35 35.82203014910699 38.0 37.0 38.0 31.5 38.0 36-37 35.72628215631657 38.0 37.0 38.0 31.0 38.0 38-39 35.73975094215959 38.0 37.0 38.0 31.0 38.0 40-41 35.706291987547104 38.0 37.0 38.0 31.0 38.0 42-43 35.761264951663115 38.0 37.0 38.0 31.0 38.0 44-45 35.7762084220875 38.0 37.0 38.0 31.5 38.0 46-47 35.75580042601999 38.0 37.0 38.0 31.5 38.0 48-49 35.721669670653775 38.0 37.0 38.0 31.0 38.0 50-51 35.62779780435851 38.0 37.0 38.0 31.0 38.0 52-53 35.68524496149435 38.0 37.0 38.0 31.0 38.0 54-55 35.65155661150254 38.0 37.0 38.0 31.0 38.0 56-57 35.59671473046043 38.0 37.0 38.0 31.0 38.0 58-59 35.61440275274455 38.0 37.0 38.0 31.0 38.0 60-61 35.59672292315255 38.0 37.0 38.0 31.0 38.0 62-63 35.57901851548419 38.0 37.0 38.0 31.0 38.0 64-65 35.596444371620514 38.0 37.0 38.0 31.0 38.0 66-67 35.53077175159758 38.0 37.0 38.0 31.0 38.0 68-69 35.23211535310503 38.0 36.0 38.0 28.5 38.0 70-71 35.436432901851546 38.0 36.5 38.0 31.0 38.0 72-73 35.480149106996556 38.0 37.0 38.0 31.0 38.0 74-75 35.45218744879568 38.0 37.0 38.0 31.0 38.0 76 34.26350974930362 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 11.0 14 33.0 15 113.0 16 199.0 17 275.0 18 328.0 19 280.0 20 263.0 21 220.0 22 229.0 23 260.0 24 263.0 25 316.0 26 336.0 27 458.0 28 537.0 29 728.0 30 938.0 31 1207.0 32 1570.0 33 2170.0 34 3236.0 35 5236.0 36 10194.0 37 31629.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 43.39996722923152 20.052433229559234 10.340815992135017 26.206783549074224 2 22.184171718826807 20.208094379813208 31.9760773390136 25.63165656234639 3 19.336391938390957 21.63362280845486 28.905456332951008 30.12452892020318 4 14.102900213009995 16.409962313616255 35.96100278551532 33.52613468785843 5 14.281500901196134 33.986563984925446 35.20399803375389 16.52793708012453 6 30.5849582172702 36.33786662297231 17.794527281664756 15.282647878092742 7 29.69031623791578 28.356545961002787 22.159593642470917 19.79354415861052 8 25.965918400786496 34.09962313616254 19.601835163034572 20.332623300016387 9 24.635425200720956 16.513190234310997 21.425528428641652 37.425856136326395 10-11 25.479272488939863 24.573160740619368 26.6172374242176 23.33032934622317 12-13 24.94265115516959 22.910863509749305 26.51155169588727 25.63493363919384 14-15 23.08700639029985 24.03653940684909 23.628543339341306 29.247910863509752 16-17 23.866131410781584 26.644273308209076 25.05407176798296 24.435523513026382 18-19 23.032934622316894 26.382926429624774 26.310011469768966 24.274127478289365 20-21 22.76011797476651 26.42798623627724 26.56726200229396 24.2446337866623 22-23 23.402425036867115 26.04047189906603 26.43535965918401 24.121743404882846 24-25 22.871538587579877 26.24201212518433 26.395215467802718 24.491233819433067 26-27 22.267737178436832 26.699164345403897 26.73766999836146 24.295428477797802 28-29 23.061609044732098 26.282975585777486 27.357037522529904 23.29837784696051 30-31 22.979682123545796 26.220711125675898 26.88104211043749 23.91856464034082 32-33 22.598721940029492 26.759790267081762 26.640176962149763 24.00131083073898 34-35 23.326233000163853 25.933147632311975 26.97116172374242 23.769457643781745 36-37 23.445846305095856 25.86269048009176 26.349336391938387 24.342126822873997 38-39 22.216123218089464 26.44846796657382 27.523349172538097 23.812059642798626 40-41 22.62248074717352 25.870063902998524 27.48975913485171 24.01769621497624 42-43 22.57496313288547 25.802064558413896 27.138292642962476 24.484679665738163 44-45 22.111256758971 26.225626740947078 27.243159102080945 24.41995739800098 46-47 22.52744551859741 25.636572177617566 27.393085367851878 24.44289693593315 48-49 21.96542683925938 25.75290840570211 27.788792397181716 24.492872357856793 50-51 22.04981156808127 26.05276093724398 27.52171063411437 24.37571686056038 52-53 21.79092249713256 25.59397017860069 28.037850237588067 24.577257086678685 54-55 21.545141733573654 25.87088317221039 27.92888743241029 24.65508766180567 56-57 21.069146321481238 26.019170899557594 27.883008356545965 25.028674422415204 58-59 21.37964935277732 25.893822710142555 27.672456169097163 25.05407176798296 60-61 20.90119613304932 25.616909716532852 28.22464361789284 25.25725053252499 62-63 20.66442733082091 25.494838603965263 28.39423234474848 25.44650172046535 64-65 21.489431427166966 25.807799442896933 27.663444207766673 25.039324922169428 66-67 21.18384401114206 25.515320334261837 27.45125348189415 25.84958217270195 68-69 20.983123054235623 25.638210716041293 27.158774373259053 26.219891856464034 70-71 21.709814845158117 25.818449942651156 26.99983614615763 25.4718990660331 72-73 21.89251187940357 25.334261838440113 26.619695231853186 26.15353105030313 74-75 22.083401605767655 25.486645911846633 26.586105194166805 25.843847288218907 76 22.428313943961985 25.605439947566772 26.65082746190398 25.315418646567263 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 2.5 12 4.0 13 3.5 14 6.0 15 6.5 16 12.5 17 21.0 18 27.5 19 39.5 20 59.0 21 73.0 22 81.5 23 132.0 24 210.5 25 247.0 26 296.0 27 398.0 28 512.0 29 573.0 30 640.5 31 766.0 32 1003.0 33 1182.0 34 1279.0 35 1534.0 36 1926.5 37 2161.0 38 2305.5 39 2666.5 40 3160.0 41 3530.5 42 3624.0 43 3672.0 44 3672.0 45 3586.0 46 3548.0 47 3506.0 48 3264.0 49 2942.5 50 2821.0 51 2596.5 52 2100.5 53 1679.5 54 1530.0 55 1404.5 56 1176.0 57 985.5 58 898.0 59 819.0 60 672.5 61 603.5 62 602.0 63 568.5 64 563.0 65 595.5 66 619.0 67 638.0 68 628.0 69 586.0 70 584.0 71 614.0 72 634.5 73 616.0 74 519.0 75 461.0 76 429.5 77 357.5 78 298.5 79 280.0 80 248.0 81 183.0 82 124.0 83 98.0 84 75.0 85 48.0 86 33.0 87 22.0 88 14.5 89 8.0 90 7.5 91 3.5 92 1.0 93 2.0 94 2.0 95 0.5 96 0.0 97 0.5 98 0.5 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 61030.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.56808127150582 #Duplication Level Percentage of deduplicated Percentage of total 1 73.49833666001331 45.251515648041945 2 14.536260811709914 17.89939374078322 3 4.9634065202927475 9.167622480747173 4 2.421823020625416 5.964279862362773 5 1.5196274118429807 4.6780271997378335 6 0.7984031936127743 2.9493691627068657 7 0.5748502994011976 2.477470096673767 8 0.45242847638057215 2.2284122562674096 9 0.26879574184963406 1.489431427166967 >10 0.9660678642714572 7.894478125512043 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0016385384237260364 0.0 5 0.0 0.0 0.0 0.0016385384237260364 0.0 6 0.0 0.0 0.0 0.0016385384237260364 0.0 7 0.0 0.0 0.0 0.0016385384237260364 0.0 8 0.0 0.0 0.0 0.0016385384237260364 0.0 9 0.0 0.0 0.0 0.0016385384237260364 0.0 10 0.0 0.0 0.0 0.0016385384237260364 0.0 11 0.0 0.0 0.0 0.0016385384237260364 0.0 12 0.0 0.0 0.0 0.0016385384237260364 0.0 13 0.0 0.0 0.0 0.0016385384237260364 0.0 14 0.0 0.0 0.0 0.0016385384237260364 0.0 15 0.0 0.0 0.0 0.0016385384237260364 0.0 16 0.0 0.0 0.0 0.0016385384237260364 0.0 17 0.0 0.0 0.0 0.0016385384237260364 0.0 18 0.0 0.0 0.0 0.0016385384237260364 0.0 19 0.0 0.0 0.0 0.0016385384237260364 0.0 20 0.0 0.0 0.0 0.0016385384237260364 0.0 21 0.0 0.0 0.0 0.0016385384237260364 0.0 22 0.0 0.0 0.0 0.004915615271178109 0.0 23 0.0 0.0 0.0 0.006554153694904146 0.0 24 0.0 0.0 0.0 0.013108307389808291 0.0 25 0.0 0.0 0.0 0.014746845813534328 0.0 26 0.0 0.0 0.0 0.016385384237260363 0.0 27 0.0 0.0 0.0 0.019662461084712438 0.0 28 0.0 0.0 0.0 0.03440930689824676 0.0 29 0.0 0.0 0.0 0.045879075864329016 0.0 30 0.0 0.0 0.0 0.052433229559233165 0.0 31 0.0 0.0 0.0 0.06062592167786335 0.0 32 0.0 0.0 0.0 0.07537276749139768 0.0 33 0.0 0.0 0.0 0.09667376699983615 0.0 34 0.0 0.0 0.0 0.1212518433557267 0.0 35 0.0 0.0 0.0 0.18679338030476814 0.0 36 0.0 0.0 0.0 0.2736359167622481 0.0 37 0.0 0.0 0.0 0.4178272980501393 0.0 38 0.0 0.0 0.0 0.5620186793380305 0.0 39 0.0 0.0 0.0 0.7488120596427986 0.0 40 0.0 0.0 0.0 0.9749303621169917 0.0 41 0.0 0.0 0.0 1.2534818941504178 0.0 42 0.0 0.0 0.0 1.5861051941668032 0.0 43 0.0 0.0 0.0 1.9990168769457644 0.0 44 0.0 0.0 0.0 2.482385711944945 0.0 45 0.0 0.0 0.0 2.9919711617237423 0.0 46 0.0 0.0 0.0 3.506472226773718 0.0 47 0.0 0.0 0.0 4.078322136654105 0.0 48 0.0 0.0 0.0 4.630509585449778 0.0 49 0.0 0.0 0.0 5.145010650499755 0.0 50 0.0 0.0 0.0 5.6922824840242505 0.0 51 0.0 0.0 0.0 6.214976241192856 0.0 52 0.0 0.0 0.0 6.806488612157955 0.0 53 0.0 0.0 0.0 7.309519908241848 0.0 54 0.0 0.0 0.0 7.8780927412747825 0.0 55 0.0 0.0 0.0 8.526953957070294 0.0 56 0.0 0.0 0.0 9.16106832705227 0.0 57 0.0 0.0 0.0 9.74766508274619 0.0 58 0.0 0.0 0.0 10.294936916270686 0.0 59 0.0 0.0 0.0 10.848762903490087 0.0 60 0.0 0.0 0.0 11.407504505980665 0.0 61 0.0 0.0 0.0 11.856464034081599 0.0 62 0.0 0.0 0.0 12.390627560216288 0.0 63 0.0 0.0 0.0 12.928068163198427 0.0 64 0.0 0.0 0.0 13.458954612485662 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTGCCG 15 0.0022147913 70.0 64 GCTTGTA 15 0.0022147913 70.0 1 CCAGTAA 15 0.0022147913 70.0 26 CGTTACT 25 2.3730705E-4 56.000004 17 CGACGTT 20 0.0069206776 52.500004 14 CCGATGC 20 0.0069206776 52.500004 33 ACGTTAC 20 0.0069206776 52.500004 16 GACGTTA 20 0.0069206776 52.500004 15 GACCGGG 20 0.0069206776 52.500004 32 CCGGAAT 20 0.0069206776 52.500004 3 AAGGTGA 20 0.0069206776 52.500004 53 TTCCGGC 20 0.0069206776 52.500004 54 TCGGCCA 20 0.0069206776 52.500004 21 ATCCGGA 20 0.0069206776 52.500004 1 CAAGGGT 20 0.0069206776 52.500004 32 CGCTACA 20 0.0069206776 52.500004 24 GGTATAC 20 0.0069206776 52.500004 39 ACTCGGA 20 0.0069206776 52.500004 21 TACTCGG 20 0.0069206776 52.500004 20 TACACGA 20 0.0069206776 52.500004 27 >>END_MODULE