##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781144_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 58131 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.869191997385215 34.0 34.0 34.0 31.0 34.0 2 32.94404018509917 34.0 34.0 34.0 31.0 34.0 3 33.04973250073111 34.0 34.0 34.0 31.0 34.0 4 33.1756721886773 34.0 34.0 34.0 32.0 34.0 5 33.12855447179646 34.0 34.0 34.0 31.0 34.0 6 36.18626894428102 38.0 36.0 38.0 34.0 38.0 7 36.05547814419157 38.0 36.0 38.0 32.0 38.0 8 35.712631814350345 38.0 36.0 38.0 31.0 38.0 9 35.746193941270576 38.0 36.0 38.0 31.0 38.0 10-11 35.66169513684609 38.0 36.0 38.0 31.0 38.0 12-13 35.64131014432919 38.0 36.0 38.0 31.0 38.0 14-15 35.639804923362746 38.0 36.0 38.0 31.0 38.0 16-17 35.566479159140556 38.0 36.0 38.0 31.0 38.0 18-19 35.60126266535927 38.0 36.0 38.0 31.0 38.0 20-21 35.494262957802206 38.0 36.0 38.0 31.0 38.0 22-23 35.5778672309095 38.0 36.0 38.0 31.0 38.0 24-25 35.54727253960881 38.0 36.0 38.0 31.0 38.0 26-27 35.27140424214275 37.5 35.5 38.0 30.5 38.0 28-29 35.228165694723984 37.0 35.0 38.0 30.0 38.0 30-31 35.28674889473775 37.5 35.5 38.0 31.0 38.0 32-33 35.15517537974574 37.0 35.0 38.0 27.0 38.0 34-35 35.20644750649396 37.0 35.0 38.0 28.5 38.0 36-37 35.15039307770381 37.0 35.0 38.0 28.0 38.0 38-39 35.09737489463453 37.0 35.0 38.0 27.0 38.0 40-41 35.141034903923895 37.0 35.0 38.0 27.0 38.0 42-43 35.11812974144605 37.0 35.0 38.0 27.0 38.0 44-45 35.069231563193476 37.0 35.0 38.0 27.0 38.0 46-47 35.117562058110124 37.0 35.0 38.0 27.0 38.0 48-49 35.07417728922606 37.0 35.0 38.0 27.0 38.0 50-51 34.959049388450225 37.0 35.0 38.0 27.0 38.0 52-53 35.01164610964889 37.0 35.0 38.0 27.0 38.0 54-55 35.01084619222102 37.0 35.0 38.0 27.0 38.0 56-57 34.948874094717105 37.0 35.0 38.0 27.0 38.0 58-59 34.929615867609364 37.0 35.0 38.0 27.0 38.0 60-61 34.93811391512274 37.0 35.0 38.0 27.0 38.0 62-63 34.8738624830125 37.0 35.0 38.0 27.0 38.0 64-65 34.83784899623265 37.0 35.0 38.0 27.0 38.0 66-67 34.812793518088455 37.0 35.0 38.0 27.0 38.0 68-69 34.721026646711735 37.0 34.0 38.0 27.0 38.0 70-71 34.66440453458568 37.0 34.0 38.0 27.0 38.0 72-73 34.603576405016256 37.0 34.0 38.0 26.5 38.0 74-75 34.563055856599746 37.0 34.0 38.0 26.0 38.0 76 33.527721869570456 37.0 34.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 5.0 22 18.0 23 27.0 24 82.0 25 155.0 26 322.0 27 580.0 28 802.0 29 1309.0 30 1985.0 31 2682.0 32 3705.0 33 4787.0 34 6274.0 35 7949.0 36 11092.0 37 16355.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.69838812337651 20.09771034387848 10.713732775971513 26.490168756773496 2 22.623041062427966 21.51519843112969 31.73177822504344 24.12998228139891 3 21.24511878343741 23.05654470076207 28.721336292167692 26.977000223632828 4 15.035007139048012 17.997282000997746 35.64191223271576 31.325798627238477 5 14.78385026921952 34.405050661437095 34.94176945175552 15.869329617587862 6 31.20366069739038 37.26583062393559 17.4622834632124 14.06822521546163 7 29.698439730952504 29.12731588997265 21.639056613510864 19.535187765563986 8 25.66788804596515 35.67459703084413 18.924498116323477 19.733016806867248 9 24.969465517537976 16.801706490512807 21.109218833324732 37.119609158624485 10-11 26.212347972682387 25.396088145739792 26.359429564260033 22.032134317317784 12-13 25.37630524160947 22.762381517606784 26.54607696409833 25.315236276685415 14-15 23.473705940031998 23.948495639159827 23.377371798179972 29.2004266226282 16-17 24.806901653162683 27.551564569678828 24.506717586141647 23.134816191016842 18-19 24.18675061499028 26.46780547384356 25.410710292270906 23.934733618895255 20-21 23.035041544098675 26.686277545543685 25.706593727959266 24.572087182398374 22-23 23.651752077204936 26.74218575286852 25.88119936006606 23.724862809860486 24-25 24.13428291273159 26.718102217405516 25.770243071682923 23.377371798179972 26-27 23.785931774784537 26.90044898591113 26.07988852763586 23.233730711668475 28-29 23.948495639159827 26.036022088042525 26.84024014725362 23.17524212554403 30-31 23.55541793535291 26.81787686432368 26.10139168429926 23.525313516024152 32-33 22.926665634515146 26.50135039823846 27.401902599301575 23.170081367944814 34-35 24.487794808277854 26.646711737283034 26.295780220536376 22.569713233902736 36-37 23.72142230479434 26.312982745867092 26.798954086459894 23.16664086287867 38-39 22.950749169978153 26.620907949286952 27.026027420825375 23.402315459909513 40-41 22.88193906865528 25.644664636768677 27.415664619566154 24.05773167500989 42-43 23.650891950938398 25.73497789475495 27.25998176532315 23.354148388983504 44-45 22.645404345357896 26.54521683783179 27.514579140217784 23.294799676592522 46-47 23.71196091586245 25.31093564535274 27.01828628442655 23.958817154358258 48-49 23.18556364074246 25.311795771619273 27.23933873492629 24.263301852711976 50-51 22.479399975916465 25.620581101305675 27.75541449484784 24.14460442793002 52-53 22.330598131805747 25.322977413084242 28.967332404396966 23.379092050713044 54-55 21.811941993084584 25.475219762261098 28.29213328516626 24.420704959488052 56-57 22.14051022690131 25.634343121570247 27.467272195558305 24.757874455970136 58-59 21.75775403829282 25.433073575200837 28.663707832309782 24.145464554196554 60-61 22.19297792916 25.986994890849978 27.294386815984588 24.525640364005437 62-63 20.762587947910756 26.874645197915054 27.417384872099227 24.94538198207497 64-65 21.189210576112576 27.200633052932172 26.67079527274604 24.93936109820922 66-67 21.339732672756362 26.792073076327604 26.245032770810756 25.623161480105278 68-69 21.034387848136106 27.31416972011491 26.190844816018995 25.46059761572999 70-71 21.548743355524593 26.697459187008654 26.117734083363437 25.63606337410332 72-73 21.697545199635307 25.99645627978187 26.202026457483957 26.103972063098862 74-75 21.62701484577936 26.09107016910082 25.91388415819442 26.36803082692539 76 22.239424747552942 24.971185770071045 26.40759663518605 26.381792847189967 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 4.0 15 6.0 16 13.0 17 19.0 18 16.0 19 30.5 20 53.5 21 59.0 22 76.0 23 122.5 24 199.0 25 246.0 26 286.0 27 368.5 28 468.5 29 526.0 30 610.0 31 739.5 32 946.0 33 1107.0 34 1218.0 35 1482.5 36 1763.5 37 1891.0 38 2054.5 39 2484.0 40 3135.0 41 3509.0 42 3498.0 43 3559.0 44 3629.5 45 3559.0 46 3479.0 47 3423.5 48 3113.0 49 2722.0 50 2586.0 51 2363.0 52 1926.5 53 1567.5 54 1422.0 55 1328.5 56 1134.5 57 911.5 58 789.0 59 727.5 60 613.5 61 571.0 62 581.0 63 565.0 64 540.5 65 559.5 66 576.0 67 565.0 68 589.5 69 608.5 70 600.0 71 597.0 72 596.0 73 572.0 74 492.0 75 435.0 76 428.5 77 350.0 78 255.0 79 232.0 80 207.5 81 157.5 82 115.0 83 98.0 84 76.5 85 45.5 86 29.5 87 23.0 88 16.5 89 7.5 90 3.5 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 58131.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.11831896922468 #Duplication Level Percentage of deduplicated Percentage of total 1 74.08197175297701 46.01847551220519 2 14.353364718914428 17.83213775782285 3 4.976460814178898 9.27388140579037 4 2.256992522846857 5.6080232578142475 5 1.3569648296870673 4.2146187060260445 6 0.949875380780947 3.540279713061877 7 0.5926336194959845 2.576938294541639 8 0.3849349210744946 1.9129208167759026 9 0.2353918582110219 1.315993187799969 >10 0.8031016338964275 6.5352393731399765 >50 0.005538631957906397 0.1909480311709759 >100 0.0 0.0 >500 0.0027693159789531985 0.9805439438509573 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT 570 0.9805439438509573 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.001720252533071855 0.0 21 0.0 0.0 0.0 0.00344050506614371 0.0 22 0.0 0.0 0.0 0.00344050506614371 0.0 23 0.0 0.0 0.0 0.00344050506614371 0.0 24 0.0 0.0 0.0 0.00344050506614371 0.0 25 0.0 0.0 0.0 0.0051607575992155645 0.0 26 0.0 0.0 0.0 0.00688101013228742 0.0 27 0.0 0.0 0.0 0.010321515198431129 0.0 28 0.0 0.0 0.0 0.029244293062221535 0.0 29 0.0 0.0 0.0 0.04472656585986823 0.0 30 0.0 0.0 0.0 0.051607575992155645 0.0 31 0.0 0.0 0.0 0.05676833359137121 0.0 32 0.0 0.0 0.0 0.07225060638901791 0.0 33 0.0 0.0 0.0 0.09633414185202388 0.0 34 0.0 0.0 0.0 0.1221379298481017 0.0 35 0.0 0.0 0.0 0.18578727357176034 0.0 36 0.0 0.0 0.0 0.2717999002253531 0.0 37 0.0 0.0 0.0 0.42490237566874817 0.0 38 0.0 0.0 0.0 0.569403588446784 0.0 39 0.0 0.0 0.0 0.7448693468201132 0.0 40 0.0 0.0 0.0 0.9685021761194543 0.0 41 0.0 0.0 0.0 1.2523438440763104 0.0 42 0.0 0.0 0.0 1.5619893000292442 0.0 43 0.0 0.0 0.0 1.967968897834202 0.0 44 0.0 0.0 0.0 2.4513598596273933 0.0 45 0.0 0.0 0.0 2.9571141043505187 0.0 46 0.0 0.0 0.0 3.4559873389413567 0.0 47 0.0 0.0 0.0 4.009908654590494 0.0 48 0.0 0.0 0.0 4.548347697441985 0.0 49 0.0 0.0 0.0 5.048941184565894 0.0 50 0.0 0.0 0.0 5.5925409850166 0.0 51 0.0 0.0 0.0 6.1103369974712285 0.0 52 0.0 0.0 0.0 6.688341848583372 0.0 53 0.0 0.0 0.0 7.185494830641138 0.0 54 0.0 0.0 0.0 7.7290946310918445 0.0 55 0.0 0.0 0.0 8.36558806832843 0.0 56 0.0 0.0 0.0 9.00552201063116 0.0 57 0.0 0.0 0.0 9.621372417470885 0.0 58 0.0 0.0 0.0 10.166692470454663 0.0 59 0.0 0.0 0.0 10.74813782663295 0.0 60 0.0 0.0 0.0 11.284856616951368 0.0 61 0.0 0.0 0.0 11.737283033149266 0.0 62 0.0 0.0 0.0 12.246477782938536 0.0 63 0.0 0.0 0.0 12.76943455299238 0.0 64 0.0 0.0 0.0 13.297552080645438 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCTT 15 0.0022142585 70.00001 53 TTGGGAT 15 0.0022142585 70.00001 10 CGGACCT 15 0.0022142585 70.00001 21 TCGTATG 135 0.0 57.037037 40 CCGTCTT 130 0.0 56.53846 47 GCCGTCT 130 0.0 56.53846 46 CGTATGC 140 0.0 55.0 41 TATGCCG 140 0.0 55.0 43 TCTCGTA 115 0.0 54.782608 38 CGTCTTC 135 0.0 54.444443 48 CTCGTAT 130 0.0 53.846153 39 GTATGCC 145 0.0 53.103447 42 GTATCTC 120 0.0 52.500004 35 CGGCATG 20 0.0069190287 52.5 19 CTGAGGA 20 0.0069190287 52.5 18 GGTCACT 20 0.0069190287 52.5 70 GTAAGGA 20 0.0069190287 52.5 3 CCTGCCA 20 0.0069190287 52.5 8 ATACATC 20 0.0069190287 52.5 37 GTCTTCT 130 0.0 51.153847 49 >>END_MODULE