##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781143_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 71487 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60943947850658 34.0 34.0 34.0 31.0 34.0 2 32.881125239554045 34.0 34.0 34.0 32.0 34.0 3 32.84316029487879 34.0 34.0 34.0 32.0 34.0 4 32.95242491641837 34.0 34.0 34.0 32.0 34.0 5 32.959908794606015 34.0 34.0 34.0 33.0 34.0 6 36.27501503769916 38.0 37.0 38.0 34.0 38.0 7 36.28973100004197 38.0 37.0 38.0 34.0 38.0 8 36.16086840964091 38.0 37.0 38.0 34.0 38.0 9 36.30057213199603 38.0 37.0 38.0 34.0 38.0 10-11 36.25876033404675 38.0 37.0 38.0 34.0 38.0 12-13 36.251157553121544 38.0 37.0 38.0 34.0 38.0 14-15 36.196343391106076 38.0 37.0 38.0 34.0 38.0 16-17 36.21201057534937 38.0 37.0 38.0 34.0 38.0 18-19 36.20635919817589 38.0 37.0 38.0 34.0 38.0 20-21 36.175164715262916 38.0 37.0 38.0 34.0 38.0 22-23 36.205072250898766 38.0 37.0 38.0 34.0 38.0 24-25 36.200903660805466 38.0 37.0 38.0 34.0 38.0 26-27 36.1617147173612 38.0 37.0 38.0 34.0 38.0 28-29 36.22743295983885 38.0 37.0 38.0 34.0 38.0 30-31 36.274539426748916 38.0 37.0 38.0 34.0 38.0 32-33 36.25074489067943 38.0 37.0 38.0 34.0 38.0 34-35 36.26592247541511 38.0 37.0 38.0 34.0 38.0 36-37 36.197189698826364 38.0 37.0 38.0 34.0 38.0 38-39 36.178361100619696 38.0 37.0 38.0 34.0 38.0 40-41 36.16699539776463 38.0 37.0 38.0 34.0 38.0 42-43 36.230741253654514 38.0 37.0 38.0 34.0 38.0 44-45 36.22475415110439 38.0 37.0 38.0 34.0 38.0 46-47 36.216284079622866 38.0 37.0 38.0 34.0 38.0 48-49 36.189328129589995 38.0 37.0 38.0 34.0 38.0 50-51 36.1061032075762 38.0 37.0 38.0 34.0 38.0 52-53 36.15018115181782 38.0 37.0 38.0 34.0 38.0 54-55 36.10236826276106 38.0 37.0 38.0 34.0 38.0 56-57 36.073041252255656 38.0 37.0 38.0 34.0 38.0 58-59 36.08267936827674 38.0 37.0 38.0 34.0 38.0 60-61 36.05956327723922 38.0 37.0 38.0 34.0 38.0 62-63 36.04579154251822 38.0 37.0 38.0 34.0 38.0 64-65 36.07021556366892 38.0 37.0 38.0 34.0 38.0 66-67 35.993075664106755 38.0 37.0 38.0 33.5 38.0 68-69 35.68909032411487 38.0 37.0 38.0 31.5 38.0 70-71 35.9293577853316 38.0 37.0 38.0 32.5 38.0 72-73 35.929553625134645 38.0 37.0 38.0 32.0 38.0 74-75 35.937121434666444 38.0 37.0 38.0 32.0 38.0 76 34.81230153734246 37.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 13.0 14 50.0 15 94.0 16 186.0 17 223.0 18 260.0 19 241.0 20 193.0 21 175.0 22 191.0 23 223.0 24 227.0 25 305.0 26 328.0 27 390.0 28 523.0 29 669.0 30 803.0 31 1138.0 32 1450.0 33 2075.0 34 3090.0 35 5279.0 36 11156.0 37 42204.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.19003455173668 18.529243079161244 9.97524025347266 26.305482115629413 2 23.08811392281114 20.683480912613483 31.12314127044078 25.1052638941346 3 19.579783736903213 21.806762068627865 28.926937764908306 29.686516429560623 4 13.728370193181977 16.254703652412328 36.32268804118231 33.694238113223385 5 13.696196511253794 33.5739365199267 35.523941415921776 17.20592555289773 6 29.746667226208963 36.77451844391288 18.536237357841287 14.942576972036875 7 28.715710548771106 29.48088463636745 21.897687691468377 19.905717123393067 8 25.30809797585575 34.1726467749381 19.62874368766349 20.890511561542656 9 24.011358708576385 16.502301117685732 21.513002364066196 37.97333780967168 10-11 24.976569166421868 24.448501126078867 27.179067522766374 23.395862184732888 12-13 25.030425112258175 23.24408633737603 26.179585099388703 25.545903450977104 14-15 23.20771608823982 23.94561248898401 23.84489487599144 29.00177654678473 16-17 23.23219606361996 26.730034831507826 25.120651307230684 24.91711779764153 18-19 22.718816008505044 26.762907941304015 26.277505000909258 24.240771049281687 20-21 22.68454404297285 26.655196049631403 26.30618154349742 24.35407836389833 22-23 22.951026060682363 26.48383622197043 26.344650076237635 24.22048764110957 24-25 22.65306978891267 26.446766544966216 26.333459230349575 24.566704435771538 26-27 22.203337669786116 26.536293312070725 26.68527144795557 24.575097570187587 28-29 22.700630883936938 26.50342020227454 26.92447577881293 23.87147313497559 30-31 22.99858715570663 26.38871403192189 26.560773287450868 24.051925524920613 32-33 22.624393246324505 26.85733070348455 26.37122833522179 24.147047714969155 34-35 23.11049561458727 25.92009736035923 26.951753465665085 24.01765355938842 36-37 23.31332969630842 26.472645376082365 26.037601242183893 24.176423685425323 38-39 22.564242449676165 26.723040552827786 26.659392616839426 24.053324380656623 40-41 22.72511085931708 25.913103081679186 27.334340509463257 24.027445549540477 42-43 22.538363618560016 26.304782687761413 26.78808734455216 24.368766349126414 44-45 22.3061535663827 26.232042189488997 26.82375816582036 24.638046078307944 46-47 22.60341041028439 26.00262984878369 26.89020381328074 24.50375592765118 48-49 22.076041797809392 25.84106201127478 27.300068543931065 24.782827646984767 50-51 22.18095597800999 26.00193042091569 27.25740344398282 24.559710157091498 52-53 21.992110453648916 25.30949683159176 27.946339893966737 24.752052820792592 54-55 21.6018297033027 25.822876886706673 27.716927553261435 24.858365856729193 56-57 21.222739798844543 25.83826429980276 27.93514904807867 25.00384685327402 58-59 21.638199952438907 25.688586736049913 27.544868297732457 25.12834501377873 60-61 21.431868731377733 25.645921636101672 27.647684194329038 25.27452543819156 62-63 20.78699623707807 25.47875837564872 28.345013778729 25.38923160854421 64-65 21.53538405584232 25.58716969518933 27.514792899408285 25.36265334956006 66-67 21.41368360680963 25.37244533971211 27.277686852154936 25.93618420132332 68-69 21.069565095751674 25.176605536671005 27.43785583392785 26.315973533649473 70-71 21.872508288220235 25.431197280624453 27.077650481905803 25.618643949249513 72-73 22.062752668317316 25.22206834809126 26.59014925790703 26.12502972568439 74-75 21.73821813756347 25.735448403206178 26.747520528207925 25.778812931022422 76 22.716018297033028 25.345867080727963 26.354442066389694 25.58367255584931 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.5 10 1.0 11 1.0 12 1.0 13 0.5 14 3.0 15 7.5 16 9.0 17 9.0 18 15.5 19 40.5 20 75.0 21 91.0 22 93.5 23 134.5 24 219.0 25 265.0 26 310.0 27 396.0 28 543.0 29 649.0 30 715.0 31 888.0 32 1167.0 33 1339.0 34 1519.0 35 1884.5 36 2274.5 37 2479.0 38 2649.0 39 3154.0 40 3775.0 41 4083.0 42 4105.0 43 4160.0 44 4200.0 45 4173.0 46 4161.0 47 4081.0 48 3803.5 49 3420.0 50 3234.0 51 3004.0 52 2467.5 53 2023.0 54 1885.0 55 1720.0 56 1456.5 57 1271.5 58 1185.0 59 1083.0 60 923.5 61 790.5 62 715.0 63 716.0 64 741.5 65 762.0 66 725.0 67 692.0 68 707.0 69 727.5 70 692.5 71 652.0 72 670.0 73 635.5 74 550.5 75 518.0 76 487.5 77 412.5 78 329.0 79 290.0 80 255.0 81 186.0 82 122.0 83 92.0 84 80.5 85 57.5 86 34.5 87 23.0 88 21.5 89 14.0 90 10.0 91 7.5 92 3.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 71487.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.577811350315436 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20733206661451 47.06310238225132 2 13.769978763831453 17.23390266761789 3 4.385827651726835 8.233664862142767 4 2.1772661227227004 5.4499419474869555 5 1.3367609254498714 4.182578650663757 6 0.7957974740136358 2.9879558521129717 7 0.6147311948139041 2.692797291815295 8 0.46272493573264784 2.3165050988291576 9 0.3151894489773108 1.7751479289940828 >10 0.9343914161171342 8.064403318085805 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0013988557360079454 0.0 5 0.0 0.0 0.0 0.0013988557360079454 0.0 6 0.0 0.0 0.0 0.0013988557360079454 0.0 7 0.0 0.0 0.0 0.0013988557360079454 0.0 8 0.0 0.0 0.0 0.0013988557360079454 0.0 9 0.0 0.0 0.0 0.0013988557360079454 0.0 10 0.0 0.0 0.0 0.0013988557360079454 0.0 11 0.0 0.0 0.0 0.0013988557360079454 0.0 12 0.0 0.0 0.0 0.0013988557360079454 0.0 13 0.0 0.0 0.0 0.0013988557360079454 0.0 14 0.0 0.0 0.0 0.0013988557360079454 0.0 15 0.0 0.0 0.0 0.0013988557360079454 0.0 16 0.0 0.0 0.0 0.0013988557360079454 0.0 17 0.0 0.0 0.0 0.0013988557360079454 0.0 18 0.0 0.0 0.0 0.0013988557360079454 0.0 19 0.0 0.0 0.0 0.0013988557360079454 0.0 20 0.0 0.0 0.0 0.0013988557360079454 0.0 21 0.0 0.0 0.0 0.0013988557360079454 0.0 22 0.0 0.0 0.0 0.008393134416047674 0.0 23 0.0 0.0 0.0 0.008393134416047674 0.0 24 0.0 0.0 0.0 0.011190845888063563 0.0 25 0.0 0.0 0.0 0.011190845888063563 0.0 26 0.0 0.0 0.0 0.011190845888063563 0.0 27 0.0 0.0 0.0 0.013988557360079455 0.0 28 0.0 0.0 0.0 0.01818512456810329 0.0 29 0.0 0.0 0.0 0.023780547512135073 0.0 30 0.0 0.0 0.0 0.023780547512135073 0.0 31 0.0 0.0 0.0 0.02797711472015891 0.0 32 0.0 0.0 0.0 0.04196567208023837 0.0 33 0.0 0.0 0.0 0.06294850812035754 0.0 34 0.0 0.0 0.0 0.08812791136850057 0.0 35 0.0 0.0 0.0 0.12309930476869921 0.0 36 0.0 0.0 0.0 0.17485696700099318 0.0 37 0.0 0.0 0.0 0.2881642816176368 0.0 38 0.0 0.0 0.0 0.4420384125785108 0.0 39 0.0 0.0 0.0 0.6001091107474086 0.0 40 0.0 0.0 0.0 0.8071397596765846 0.0 41 0.0 0.0 0.0 1.0281589659658399 0.0 42 0.0 0.0 0.0 1.3219186705275086 0.0 43 0.0 0.0 0.0 1.6212737980332088 0.0 44 0.0 0.0 0.0 2.0143522598514414 0.0 45 0.0 0.0 0.0 2.523535747758334 0.0 46 0.0 0.0 0.0 3.059297494649377 0.0 47 0.0 0.0 0.0 3.5796718284443325 0.0 48 0.0 0.0 0.0 4.1000461622392885 0.0 49 0.0 0.0 0.0 4.6218193517702515 0.0 50 0.0 0.0 0.0 5.108621147901017 0.0 51 0.0 0.0 0.0 5.606613789919845 0.0 52 0.0 0.0 0.0 6.073831605746499 0.0 53 0.0 0.0 0.0 6.566228824821296 0.0 54 0.0 0.0 0.0 7.1103837061283865 0.0 55 0.0 0.0 0.0 7.721683662763859 0.0 56 0.0 0.0 0.0 8.331584763663324 0.0 57 0.0 0.0 0.0 8.889728202330494 0.0 58 0.0 0.0 0.0 9.547190398254228 0.0 59 0.0 0.0 0.0 10.155692643417684 0.0 60 0.0 0.0 0.0 10.711038370612838 0.0013988557360079454 61 0.0 0.0 0.0 11.284569222376096 0.0013988557360079454 62 0.0 0.0 0.0 11.834319526627219 0.0013988557360079454 63 0.0 0.0 0.0 12.386867542350357 0.0013988557360079454 64 0.0 0.0 0.0 12.96459496132164 0.0013988557360079454 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAGTAC 15 0.0022163512 70.0 40 TGCGGCA 15 0.0022163512 70.0 35 TTACGTT 15 0.0022163512 70.0 52 TATGTTC 15 0.0022163512 70.0 28 TTTTACG 15 0.0022163512 70.0 50 GGAATGG 20 0.006925517 52.5 10 TGCTTAC 20 0.006925517 52.5 7 TCCGACA 20 0.006925517 52.5 66 CTGAGTC 20 0.006925517 52.5 40 TTACTCG 20 0.006925517 52.5 19 CGCCTAG 20 0.006925517 52.5 16 TACTGTA 20 0.006925517 52.5 50 TAATTCA 20 0.006925517 52.5 28 GCTTACC 20 0.006925517 52.5 8 GTATCCG 20 0.006925517 52.5 63 TATAGTC 20 0.006925517 52.5 5 CAAGAGT 20 0.006925517 52.5 4 GGTCTAC 20 0.006925517 52.5 1 ACAAGCA 20 0.006925517 52.5 34 TACGTTG 20 0.006925517 52.5 53 >>END_MODULE