##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781142_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 38036 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27523924702913 34.0 34.0 34.0 27.0 34.0 2 32.489378483541905 34.0 34.0 34.0 31.0 34.0 3 32.55142496582185 34.0 34.0 34.0 31.0 34.0 4 32.59446314018299 34.0 34.0 34.0 31.0 34.0 5 32.59930066253023 34.0 34.0 34.0 31.0 34.0 6 35.84067725312862 38.0 37.0 38.0 32.0 38.0 7 35.668945209801244 38.0 37.0 38.0 31.0 38.0 8 35.63205910190346 38.0 37.0 38.0 31.0 38.0 9 35.8724366389736 38.0 37.0 38.0 32.0 38.0 10-11 35.78045798717005 38.0 37.0 38.0 31.0 38.0 12-13 35.81188873698601 38.0 37.0 38.0 31.5 38.0 14-15 35.783284257019666 38.0 37.0 38.0 31.5 38.0 16-17 35.76898201703649 38.0 37.0 38.0 31.0 38.0 18-19 35.76172573351562 38.0 37.0 38.0 31.0 38.0 20-21 35.756717320433275 38.0 37.0 38.0 31.0 38.0 22-23 35.80422494478914 38.0 37.0 38.0 31.5 38.0 24-25 35.78662319907456 38.0 37.0 38.0 31.5 38.0 26-27 35.739431065306555 38.0 37.0 38.0 31.0 38.0 28-29 35.7835077295194 38.0 37.0 38.0 31.5 38.0 30-31 35.8663371542749 38.0 37.0 38.0 32.0 38.0 32-33 35.83758807445578 38.0 37.0 38.0 32.0 38.0 34-35 35.861657377221576 38.0 37.0 38.0 32.0 38.0 36-37 35.7738326848249 38.0 37.0 38.0 31.5 38.0 38-39 35.75792670102008 38.0 37.0 38.0 31.0 38.0 40-41 35.71296929224945 38.0 37.0 38.0 31.0 38.0 42-43 35.82218161741508 38.0 37.0 38.0 32.0 38.0 44-45 35.8133084446314 38.0 37.0 38.0 32.0 38.0 46-47 35.77897255231886 38.0 37.0 38.0 31.5 38.0 48-49 35.77076979703439 38.0 37.0 38.0 31.5 38.0 50-51 35.6765432747923 38.0 37.0 38.0 31.0 38.0 52-53 35.73899726574824 38.0 37.0 38.0 31.0 38.0 54-55 35.70117783152803 38.0 37.0 38.0 31.0 38.0 56-57 35.627037543379956 38.0 37.0 38.0 31.0 38.0 58-59 35.637277842044384 38.0 37.0 38.0 31.0 38.0 60-61 35.66401566936587 38.0 37.0 38.0 31.0 38.0 62-63 35.65654905878641 38.0 37.0 38.0 31.0 38.0 64-65 35.62828636029025 38.0 37.0 38.0 31.0 38.0 66-67 35.56420233463035 38.0 37.0 38.0 31.0 38.0 68-69 35.31345304448418 38.0 37.0 38.0 29.0 38.0 70-71 35.49755494794405 38.0 37.0 38.0 31.0 38.0 72-73 35.53712272583868 38.0 37.0 38.0 31.0 38.0 74-75 35.555776106846146 38.0 37.0 38.0 31.0 38.0 76 34.61441791986539 37.0 35.0 38.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 15.0 14 47.0 15 90.0 16 151.0 17 179.0 18 200.0 19 151.0 20 155.0 21 146.0 22 168.0 23 157.0 24 205.0 25 228.0 26 271.0 27 310.0 28 367.0 29 447.0 30 538.0 31 662.0 32 862.0 33 1277.0 34 1689.0 35 2738.0 36 5325.0 37 21654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.8883163318961 19.94952150594174 10.006309811757284 27.15585235040488 2 21.966032180039964 19.615627300452203 33.07130087285729 25.347039646650543 3 18.627090125144598 21.195709328005048 29.64034072983489 30.53685981701546 4 12.290987485540015 16.02429277526554 36.986013250604685 34.69870648858976 5 12.248922073824797 33.91786728362604 37.16742033862657 16.665790303922602 6 29.19865390682511 38.25586286675781 18.658639183931015 13.886844042486066 7 27.30571037964034 30.252918287937742 22.310442738458303 20.130928593963613 8 23.929961089494164 36.065832369334316 19.542012829950572 20.462193711220948 9 22.888842149542537 14.778104953202229 21.703123356819855 40.62992954043538 10-11 23.20696182563887 24.885634661899253 28.78983068671785 23.11757282574403 12-13 23.91944473656536 23.181985487432957 28.049742349353245 24.848827426648437 14-15 21.52434535703018 24.496529603533496 24.87774739720265 29.101377642233672 16-17 21.66368703333684 28.124671363970975 25.966189925333893 24.245451677358293 18-19 21.02350404879588 27.977442422967712 27.473972026501208 23.525081501735198 20-21 21.34951098958881 27.589651908718054 27.297823114943736 23.763013986749396 22-23 21.383689136607426 27.005994321169418 27.54890104111894 24.061415501104218 24-25 21.39157640130403 27.392470291302978 27.090125144599853 24.12582816279314 26-27 20.644915343358925 27.35434851193606 28.11284046692607 23.887895677778946 28-29 20.8328951519613 27.614628246923967 28.4322746871385 23.12020191397623 30-31 21.264065622042274 28.136502261015877 27.655379114523083 22.94405300241876 32-33 20.44773372594384 27.857818908402564 27.67115364391629 24.0232937217373 34-35 21.140498475128826 27.324113997265748 27.807866231990747 23.727521295614682 36-37 21.695236092123253 27.64486276159428 27.071721526974446 23.588179619308026 38-39 20.79082974024608 28.028709643495635 28.1838258491955 22.996634767062783 40-41 21.111578504574613 27.213692291513304 28.405983804816486 23.268745399095593 42-43 20.840782416657902 27.67772636449679 27.785518982017038 23.69597223682827 44-45 20.78294247554948 27.991902408244822 27.583079188137553 23.642075928068145 46-47 20.521348196445473 27.55415921758334 27.89199705542118 24.032495530550005 48-49 20.72641707855716 27.611999158691763 28.122042275738774 23.539541487012304 50-51 20.963035019455255 27.529182879377434 27.931433378904195 23.57634872226312 52-53 20.905195078346832 27.333315806078453 28.13518771689978 23.62630139867494 54-55 20.165106740982228 28.09180776106846 28.1877694815438 23.555316016405513 56-57 20.71327163739615 27.42007571774109 28.298191187296247 23.568461457566517 58-59 20.63176990219792 27.238668629719214 28.509832789988433 23.619728678094436 60-61 20.36623199074561 27.828898937848358 28.198285834472603 23.60658323693343 62-63 20.211115785045745 27.57650646755705 28.877905142496584 23.334472604900622 64-65 20.53317909349038 27.915658849510987 28.093122305184565 23.458039751814074 66-67 20.205857608581343 27.86439162898307 28.06420233463035 23.865548427805237 68-69 20.21505941739405 27.266274056157325 28.377063834262277 24.14160269218635 70-71 20.815806078451992 27.848617099589863 27.88673887895678 23.448837943001365 72-73 20.846040593122307 27.229466820906513 27.88805342307288 24.036439162898308 74-75 20.431959196550636 27.765800820275526 27.998475128825323 23.80376485434851 76 20.81449153433589 27.153223262172677 28.06025870228205 23.97202650120938 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 1.0 8 1.0 9 1.5 10 2.0 11 1.0 12 0.0 13 1.0 14 4.0 15 10.5 16 18.0 17 21.0 18 22.0 19 40.0 20 61.5 21 66.0 22 83.0 23 127.5 24 189.0 25 223.0 26 260.5 27 349.0 28 469.0 29 538.0 30 581.5 31 664.0 32 814.5 33 926.0 34 1018.0 35 1190.0 36 1399.0 37 1528.0 38 1608.5 39 1814.5 40 1998.0 41 2097.0 42 2138.0 43 2159.0 44 2182.5 45 2145.0 46 2105.0 47 2082.0 48 1958.5 49 1767.5 50 1677.0 51 1516.5 52 1294.5 53 1200.5 54 1168.0 55 1104.5 56 962.0 57 808.5 58 734.0 59 646.5 60 525.5 61 480.5 62 469.0 63 395.5 64 303.0 65 257.0 66 217.5 67 205.0 68 196.0 69 172.5 70 146.5 71 135.0 72 129.5 73 114.0 74 91.0 75 78.0 76 77.5 77 72.5 78 54.0 79 40.0 80 39.5 81 33.0 82 27.0 83 27.0 84 18.5 85 9.5 86 5.5 87 2.0 88 4.5 89 5.0 90 2.0 91 1.0 92 1.0 93 1.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 38036.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.40919129245978 #Duplication Level Percentage of deduplicated Percentage of total 1 83.55985273371641 63.847407719003044 2 10.690568764408354 16.33715427489747 3 2.8008120290403604 6.420233463035019 4 1.1251419330420123 3.4388474077190025 5 0.6537521935106493 2.4976338205910187 6 0.36816570897704987 1.6878746450730886 7 0.2855864845335994 1.5275002629088232 8 0.15483604583146957 0.9464717635923862 9 0.11010563259126725 0.757177410873909 >10 0.2511784743488284 2.539699232306236 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0026290882322010725 0.0 20 0.0 0.0 0.0 0.0026290882322010725 0.0 21 0.0 0.0 0.0 0.0026290882322010725 0.0 22 0.0 0.0 0.0 0.005258176464402145 0.0 23 0.0 0.0 0.0 0.005258176464402145 0.0 24 0.0 0.0 0.0 0.015774529393206435 0.0 25 0.0 0.0 0.0 0.015774529393206435 0.0 26 0.0 0.0 0.0 0.015774529393206435 0.0 27 0.0 0.0 0.0 0.015774529393206435 0.0 28 0.0 0.0 0.0 0.015774529393206435 0.0 29 0.0 0.0 0.0 0.015774529393206435 0.0 30 0.0 0.0 0.0 0.018403617625407508 0.0 31 0.0 0.0 0.0 0.02103270585760858 0.0 32 0.0 0.0 0.0 0.026290882322010725 0.0 33 0.0 0.0 0.0 0.03154905878641287 0.0 34 0.0 0.0 0.0 0.03943632348301609 0.0 35 0.0 0.0 0.0 0.047323588179619305 0.0 36 0.0 0.0 0.0 0.05521085287622252 0.0 37 0.0 0.0 0.0 0.07624355873383111 0.0 38 0.0 0.0 0.0 0.12882532337785257 0.0 39 0.0 0.0 0.0 0.17614891155747187 0.0 40 0.0 0.0 0.0 0.23398885266589547 0.0 41 0.0 0.0 0.0 0.3076033231675255 0.0 42 0.0 0.0 0.0 0.3707014407403513 0.0 43 0.0 0.0 0.0 0.46797770533179095 0.0 44 0.0 0.0 0.0 0.5810284993164371 0.0 45 0.0 0.0 0.0 0.6967083815332843 0.0 46 0.0 0.0 0.0 0.870228204858555 0.0 47 0.0 0.0 0.0 1.0437480281838258 0.0 48 0.0 0.0 0.0 1.2146387632768956 0.0 49 0.0 0.0 0.0 1.3592386160479546 0.0 50 0.0 0.0 0.0 1.488063939425807 0.0 51 0.0 0.0 0.0 1.622147439268062 0.0 52 0.0 0.0 0.0 1.7667472920391207 0.0 53 0.0 0.0 0.0 1.919234409506783 0.0 54 0.0 0.0 0.0 2.0690924387422442 0.0 55 0.0 0.0 0.0 2.245241350299716 0.0 56 0.0 0.0 0.0 2.4345357030181933 0.0 57 0.0 0.0 0.0 2.529182879377432 0.0 58 0.0 0.0 0.0 2.707960879167105 0.0 59 0.0 0.0 0.0 2.9156588495109896 0.0 60 0.0 0.0 0.0 3.115469555158271 0.0 61 0.0 0.0 0.0 3.3389420548953623 0.0 62 0.0 0.0 0.0 3.48091281943422 0.0 63 0.0 0.0 0.0 3.646545378062888 0.0 64 0.0 0.0 0.0 3.8568724366389735 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTTT 20 0.0069006784 52.5 21 CCCCGGG 20 0.0069006784 52.5 1 TATTAAT 20 0.0069006784 52.5 66 AAACAAC 20 0.0069006784 52.5 27 GAGCCCT 20 0.0069006784 52.5 18 CTGGACA 20 0.0069006784 52.5 4 GAGTAGC 35 0.0012405107 40.000004 6 CCTGGAC 40 0.0023902135 35.0 3 AATCACC 50 0.0071243388 27.999998 42 TCTAGAG 50 0.0071243388 27.999998 2 >>END_MODULE