##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781142_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 36027 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.628112249146476 34.0 34.0 34.0 31.0 34.0 2 32.78693757459683 34.0 34.0 34.0 31.0 34.0 3 32.93588142226663 34.0 34.0 34.0 31.0 34.0 4 33.12493407721986 34.0 34.0 34.0 31.0 34.0 5 32.99578094207122 34.0 34.0 34.0 31.0 34.0 6 35.89363532905876 38.0 36.0 38.0 32.0 38.0 7 35.84991811696783 38.0 36.0 38.0 31.0 38.0 8 35.45565825630777 37.0 36.0 38.0 31.0 38.0 9 35.47558775362922 37.0 36.0 38.0 31.0 38.0 10-11 35.49739084575457 37.0 36.0 38.0 31.0 38.0 12-13 35.40673661420601 37.0 35.5 38.0 31.0 38.0 14-15 35.46037693951759 37.0 36.0 38.0 31.0 38.0 16-17 35.33516529269714 37.0 35.0 38.0 31.0 38.0 18-19 35.371415882532546 37.0 35.5 38.0 31.0 38.0 20-21 35.28542482027368 37.0 35.0 38.0 30.5 38.0 22-23 35.31792822050129 37.0 35.0 38.0 31.0 38.0 24-25 35.34998750936798 37.0 35.0 38.0 31.0 38.0 26-27 35.07584589335776 37.0 35.0 38.0 27.0 38.0 28-29 35.05737363643934 37.0 35.0 38.0 27.0 38.0 30-31 35.07298692647181 37.0 35.0 38.0 27.0 38.0 32-33 34.98174979876204 37.0 35.0 38.0 27.0 38.0 34-35 34.95299358814223 37.0 35.0 38.0 27.0 38.0 36-37 34.94984317317567 37.0 35.0 38.0 27.0 38.0 38-39 34.968828933855164 37.0 35.0 38.0 27.0 38.0 40-41 34.95321564382269 37.0 35.0 38.0 27.0 38.0 42-43 34.896438782024596 37.0 35.0 38.0 27.0 38.0 44-45 34.87065256613096 37.0 35.0 38.0 27.0 38.0 46-47 34.915507813584256 37.0 34.5 38.0 27.0 38.0 48-49 34.85213867377245 37.0 35.0 38.0 27.0 38.0 50-51 34.794251533572044 37.0 34.0 38.0 27.0 38.0 52-53 34.78170538762595 37.0 34.0 38.0 27.0 38.0 54-55 34.81747023066034 37.0 34.0 38.0 27.0 38.0 56-57 34.734657340328084 37.0 34.0 38.0 27.0 38.0 58-59 34.72828711799484 37.0 34.0 38.0 27.0 38.0 60-61 34.736988924972934 37.0 34.0 38.0 27.0 38.0 62-63 34.67003913731368 37.0 34.0 38.0 27.0 38.0 64-65 34.603339162294944 37.0 34.0 38.0 27.0 38.0 66-67 34.64387820245927 37.0 34.0 38.0 27.0 38.0 68-69 34.58697643434091 37.0 34.0 38.0 27.0 38.0 70-71 34.56804618758153 37.0 34.0 38.0 26.5 38.0 72-73 34.59163960363061 37.0 34.0 38.0 27.0 38.0 74-75 34.62400421905793 37.0 34.0 38.0 27.0 38.0 76 33.684181308463096 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 5.0 21 5.0 22 8.0 23 19.0 24 58.0 25 113.0 26 196.0 27 365.0 28 537.0 29 840.0 30 1276.0 31 1796.0 32 2521.0 33 3230.0 34 4101.0 35 5389.0 36 7272.0 37 8295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.63244233491548 21.336775196380493 9.501207427762512 23.529575040941516 2 22.372109806533988 23.37968745662975 31.57076636966719 22.67743636716907 3 20.74832764315652 25.36153440475199 29.580592333527633 24.309545618563856 4 14.644572126460709 17.88103366919255 38.15749299136758 29.316901212979158 5 13.853498764815278 37.052765981069754 35.30962888944403 13.784106364670942 6 31.18216892885891 39.32606100979821 17.708940516834595 11.782829544508285 7 29.06431287645377 31.25988841702057 22.383212590557083 17.29258611596858 8 25.09506758819774 37.10550420517945 19.29941432814278 18.50001387848003 9 24.892441779776277 16.087934049462906 21.619896188969385 37.399727981791436 10-11 25.115885308241044 26.177589030449383 28.406472923085463 20.30005273822411 12-13 25.03261442806784 24.297054986537876 27.915174730063562 22.755155855330724 14-15 23.225636328309324 25.652982485358205 24.61209648319316 26.509284703139315 16-17 23.09517861603797 29.5528353734699 25.272712132567243 22.07927387792489 18-19 22.78568851139423 28.321814194909372 27.204596552585556 21.687900741110834 20-21 22.93002470369445 28.41618785910567 27.056096816276682 21.597690620923196 22-23 22.87034723957032 28.10530990645905 27.233741360646178 21.790601493324452 24-25 23.04105254392539 27.725039553668086 27.436367169067644 21.797540733338884 26-27 22.542815110889055 27.908235490049133 27.79026840980376 21.758680989258057 28-29 22.39015183057152 27.987342826213673 28.21217420268132 21.41033114053349 30-31 23.0813001360091 28.028978266300275 27.935992450106866 20.953729147583758 32-33 22.83703888750104 28.40369722707969 27.440530713076306 21.318733172342966 34-35 23.258944680378605 27.41277375301857 27.94154384211841 21.386737724484416 36-37 23.00219279984456 28.174702306603383 27.210147944597107 21.61295694895495 38-39 22.73156243928165 28.398145835068146 27.923501818080883 20.946789907569325 40-41 22.541427262886167 28.169150914591835 28.056735226358008 21.232686596163987 42-43 22.535875870874623 27.922113970078 27.958198018153052 21.583812140894327 44-45 22.548366502900603 28.05257168234935 27.711161073639218 21.687900741110834 46-47 22.36794626252533 27.745857273711383 27.93044105809532 21.955755405667972 48-49 22.141727038054793 27.89990840203181 28.38981874705082 21.568545812862574 50-51 22.26940905432037 28.06922585838399 27.958198018153052 21.703167069142587 52-53 22.74821661531629 27.580703361367863 28.192744330640906 21.47833569267494 54-55 22.538651566880397 27.618175257445802 28.3190384989036 21.524134676770203 56-57 22.11813362200572 27.9110111860549 27.980403586199238 21.990451605740137 58-59 22.287451078357897 27.818025369861495 28.209398506675548 21.68512504510506 60-61 22.220834374219336 27.704221833624782 28.26768812279679 21.80725566935909 62-63 21.696227829128155 28.01371193826852 28.746495683792713 21.543564548810615 64-65 21.965470341688178 27.974852194187694 28.11502484247925 21.944652621644877 66-67 21.966858189691067 27.786104865795096 28.05118383434646 22.195853110167374 68-69 22.03208704582674 28.117800538485028 28.144169650539872 21.70594276514836 70-71 22.295778166375218 28.142781802536987 27.804146889832626 21.757293141255168 72-73 21.957143253670857 27.55294640131013 28.01926333028007 22.470647014738944 74-75 22.152829822077884 27.715324617647873 28.00954839425986 22.12229716601438 76 22.163932606100982 27.59041829738807 28.00954839425986 22.23610070225109 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 1.0 11 2.5 12 3.0 13 1.5 14 3.5 15 7.5 16 10.5 17 13.0 18 20.0 19 34.5 20 58.5 21 75.0 22 99.0 23 143.5 24 214.0 25 264.0 26 306.5 27 367.0 28 448.0 29 511.0 30 570.5 31 728.0 32 925.0 33 1024.0 34 1058.0 35 1183.5 36 1341.0 37 1407.0 38 1509.0 39 1677.0 40 1919.5 41 2082.0 42 2068.0 43 2081.5 44 2080.0 45 2033.0 46 2001.0 47 1959.5 48 1833.5 49 1657.0 50 1565.0 51 1431.0 52 1185.0 53 1039.0 54 1005.0 55 949.5 56 836.5 57 706.5 58 634.0 59 583.5 60 487.5 61 395.0 62 348.0 63 313.5 64 254.5 65 219.5 66 201.0 67 193.0 68 174.5 69 142.5 70 129.0 71 129.0 72 116.0 73 111.0 74 104.5 75 90.0 76 79.0 77 56.0 78 41.0 79 38.0 80 31.5 81 26.0 82 22.0 83 17.0 84 12.5 85 5.5 86 5.0 87 7.0 88 5.0 89 3.0 90 2.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 36027.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.51333721930774 #Duplication Level Percentage of deduplicated Percentage of total 1 84.60369087180938 66.42518111416437 2 10.019090716255391 15.732644960723901 3 2.8070423531075446 6.611707885752352 4 1.1313017040231916 3.552890887390013 5 0.5479742628862335 2.151164404474422 6 0.3393905112069575 1.5988008993255058 7 0.19444248037898607 1.0686429622227773 8 0.12020080605246411 0.7549893135703778 9 0.09191826345188432 0.6495128653509868 >10 0.14494803082797145 1.4544647070252865 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCGT 42 0.1165792322424848 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0027756960057734475 0.0 20 0.0 0.0 0.0 0.0027756960057734475 0.0 21 0.0 0.0 0.0 0.0027756960057734475 0.0 22 0.0 0.0 0.0 0.0027756960057734475 0.0 23 0.0 0.0 0.0 0.0027756960057734475 0.0 24 0.0 0.0 0.0 0.0027756960057734475 0.0 25 0.0 0.0 0.0 0.0027756960057734475 0.0 26 0.0 0.0 0.0 0.0027756960057734475 0.0 27 0.0 0.0 0.0 0.0027756960057734475 0.0 28 0.0 0.0 0.0 0.0027756960057734475 0.0 29 0.0 0.0 0.0 0.0027756960057734475 0.0 30 0.0 0.0 0.0 0.008327088017320343 0.0 31 0.0 0.0 0.0 0.01110278402309379 0.0 32 0.0 0.0 0.0 0.019429872040414135 0.0 33 0.0 0.0 0.0 0.02220556804618758 0.0 34 0.0 0.0 0.0 0.027756960057734478 0.0 35 0.0 0.0 0.0 0.030532656063507923 0.0 36 0.0 0.0 0.0 0.03330835206928137 0.0 37 0.0 0.0 0.0 0.07216809615010963 0.0 38 0.0 0.0 0.0 0.11380353623671136 0.0 39 0.0 0.0 0.0 0.15266328031753962 0.0 40 0.0 0.0 0.0 0.20817720043300858 0.0 41 0.0 0.0 0.0 0.27756960057734475 0.0 42 0.0 0.0 0.0 0.33863491270436064 0.0 43 0.0 0.0 0.0 0.421905792877564 0.0 44 0.0 0.0 0.0 0.5190551530796347 0.0 45 0.0 0.0 0.0 0.6245316012990257 0.0 46 0.0 0.0 0.0 0.7799705776223388 0.0 47 0.0 0.0 0.0 0.9492880339745191 0.0 48 0.0 0.0 0.0 1.1158297943209259 0.0 49 0.0 0.0 0.0 1.246287506592278 0.0 50 0.0 0.0 0.0 1.3711938268520831 0.0 51 0.0 0.0 0.0 1.4933244511061148 0.0 52 0.0 0.0 0.0 1.6348849474005607 0.0 53 0.0 0.0 0.0 1.77922113970078 0.0 54 0.0 0.0 0.0 1.9207816359952259 0.0 55 0.0 0.0 0.0 2.0762206123185387 0.0 56 0.0 0.0 0.0 2.2594165486995865 0.0 57 0.0 0.0 0.0 2.3565659089016573 0.0 58 0.0 0.0 0.0 2.5258833652538373 0.0 59 0.0 0.0 0.0 2.717406389652205 0.0 60 0.0 0.0 0.0 2.903378022039026 0.0 61 0.0 0.0 0.0 3.122658006495129 0.0 62 0.0 0.0 0.0 3.261442806783801 0.0 63 0.0 0.0 0.0 3.4168817831071143 0.0 64 0.0 0.0 0.0 3.613956199517029 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAATACC 20 0.006897733 52.500004 61 TAGCGTG 20 0.006897733 52.500004 4 TAGAAGA 20 0.006897733 52.500004 65 ATTGAGA 20 0.006897733 52.500004 59 AAAGCCC 20 0.006897733 52.500004 62 TACACAA 30 5.803426E-4 46.666664 5 ATCCTCC 35 0.0012396383 40.0 35 GCATTAT 35 0.0012396383 40.0 1 >>END_MODULE