##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781141_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 48176 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72291182331451 34.0 34.0 34.0 31.0 34.0 2 32.80693706409831 34.0 34.0 34.0 31.0 34.0 3 32.94335353703089 34.0 34.0 34.0 31.0 34.0 4 33.094694453669874 34.0 34.0 34.0 31.0 34.0 5 33.010544669545 34.0 34.0 34.0 31.0 34.0 6 35.98866655596147 38.0 36.0 38.0 32.0 38.0 7 35.87182414480239 38.0 36.0 38.0 32.0 38.0 8 35.4959315841913 37.0 36.0 38.0 31.0 38.0 9 35.5292261707074 37.0 36.0 38.0 31.0 38.0 10-11 35.46228412487545 37.0 35.5 38.0 31.0 38.0 12-13 35.386883510461644 37.0 35.0 38.0 31.0 38.0 14-15 35.44489995018266 37.0 36.0 38.0 31.0 38.0 16-17 35.37870516439721 37.0 35.5 38.0 31.0 38.0 18-19 35.40520176021255 37.0 35.5 38.0 31.0 38.0 20-21 35.286916722019264 37.0 35.0 38.0 30.5 38.0 22-23 35.348607190302225 37.0 35.0 38.0 31.0 38.0 24-25 35.36991448023912 37.0 35.0 38.0 31.0 38.0 26-27 35.03685445034872 37.0 35.0 38.0 27.0 38.0 28-29 34.95308867485885 37.0 35.0 38.0 27.0 38.0 30-31 35.09353204915311 37.0 35.0 38.0 27.0 38.0 32-33 34.951002573895714 37.0 35.0 38.0 27.0 38.0 34-35 34.985200099634675 37.0 35.0 38.0 27.0 38.0 36-37 34.93098223181667 37.0 35.0 38.0 27.0 38.0 38-39 34.964328711391566 37.0 35.0 38.0 27.0 38.0 40-41 34.949508053802724 37.0 35.0 38.0 27.0 38.0 42-43 34.90101917967452 37.0 35.0 38.0 27.0 38.0 44-45 34.84125913317835 37.0 34.0 38.0 27.0 38.0 46-47 34.91581908003985 37.0 35.0 38.0 27.0 38.0 48-49 34.882036698771174 37.0 34.5 38.0 27.0 38.0 50-51 34.78502781467951 37.0 34.0 38.0 27.0 38.0 52-53 34.774618067087346 37.0 34.0 38.0 27.0 38.0 54-55 34.778416638990365 37.0 34.0 38.0 27.0 38.0 56-57 34.74429176353371 37.0 34.0 38.0 27.0 38.0 58-59 34.727187811358355 37.0 34.0 38.0 27.0 38.0 60-61 34.71989164729325 37.0 34.0 38.0 27.0 38.0 62-63 34.68291265360345 37.0 34.0 38.0 27.0 38.0 64-65 34.65069744271007 37.0 34.0 38.0 27.0 38.0 66-67 34.6204022749917 37.0 34.0 38.0 27.0 38.0 68-69 34.51057580538027 37.0 34.0 38.0 26.5 38.0 70-71 34.54098513782796 37.0 34.0 38.0 27.0 38.0 72-73 34.542126785121226 37.0 34.0 38.0 27.0 38.0 74-75 34.520809116572565 37.0 34.0 38.0 26.5 38.0 76 33.49931501162405 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 7.0 22 16.0 23 23.0 24 77.0 25 138.0 26 276.0 27 458.0 28 781.0 29 1132.0 30 1815.0 31 2361.0 32 3272.0 33 4409.0 34 5607.0 35 7171.0 36 9138.0 37 11493.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.689721022915975 19.588591829956826 9.367734971770176 23.353952175357023 2 25.022832945865158 22.56517768183328 30.185154433742944 22.226834938558618 3 20.989704417137165 24.389737628694785 29.987960810362008 24.632597143806045 4 14.880853537030886 18.478080371969448 38.19536698771173 28.445699103287946 5 13.502573895715708 36.72367984058452 35.52391232148788 14.24983394221189 6 29.50224178013949 39.25606110926603 19.24402191962803 11.997675190966456 7 29.159747592162073 31.303968781135836 22.702175357024245 16.83410826967785 8 25.799153105280638 36.36665559614746 19.33950514779143 18.49468615078047 9 25.257389571570904 17.058286283626703 21.616572567253403 36.06775157754898 10-11 25.005189305878446 25.661117568913983 28.732148787778144 20.601544337429427 12-13 25.318623380936568 24.101212221853206 27.26668880770508 23.31347558950515 14-15 23.30932414480239 24.909706077715043 24.95122052474261 26.829749252739955 16-17 23.797118897376286 28.52769013616739 25.691215543008965 21.98397542344736 18-19 23.04570740617735 27.966207240119562 27.145259050149452 21.842826303553636 20-21 22.73331119229492 28.11358352706742 27.222060777150446 21.93104450348721 22-23 23.279226170707407 27.52407837927599 27.448314513450683 21.748380936565926 24-25 23.158834274327468 27.81467950846895 27.356982729990037 21.66950348721355 26-27 22.558950514779145 28.04404682829625 27.625788774493525 21.771213882431088 28-29 22.602540684158086 27.362172035868483 28.650157754898704 21.385129525074724 30-31 22.846438060445035 27.73476419794088 27.988002324809035 21.430795416805047 32-33 22.36902191962803 28.24435403520425 27.605031550979742 21.781592494187976 34-35 23.30621056127532 27.16082696778479 28.404184656260377 21.12877781467951 36-37 23.451511125871804 27.912238458983722 27.05185154433743 21.584398870807043 38-39 22.619146462969113 28.194536698771174 28.00357024244437 21.182746595815345 40-41 22.777939222849554 26.89098306210561 28.534955164397207 21.796122550647627 42-43 22.972019262703423 27.503321155762205 27.877989040185984 21.64667054134839 44-45 22.42818000664231 27.904973430753905 27.77524078379276 21.891605778811027 46-47 23.14534207904351 27.149410494852212 27.515775489870475 22.189471936233808 48-49 22.763409166389902 26.852582198605113 28.059614745931583 22.324393889073395 50-51 22.581783460644303 26.826635669212884 28.164438724676188 22.42714214546662 52-53 22.207115576220524 26.763326137495845 29.016522749916973 22.013035536366658 54-55 22.010959814015276 26.770591165725673 28.683369312520757 22.53507970773829 56-57 22.25900863500498 26.572359681169043 28.55882597143806 22.609805712387914 58-59 22.024452009299235 26.53084523414148 28.89509299236134 22.549609764197942 60-61 21.834523414148123 26.913816007970777 28.438434075058122 22.813226502822985 62-63 20.881766854865493 27.212720026569247 29.012371305214213 22.893141813351043 64-65 21.38824310860179 27.569744271006307 27.95479076718698 23.087221853204916 66-67 21.562603786117567 27.088176685486548 27.80222517436068 23.546994354035206 68-69 21.106982729990037 27.73891564264364 27.610220856858188 23.54388077050814 70-71 21.419378943872466 27.319619727665227 27.61956160743939 23.641439721022916 72-73 21.570906675523084 26.44989206243773 27.714006974427104 24.265194287612086 74-75 21.350880106276986 26.877490866821653 27.408875788774495 24.36275323812687 76 21.51486217203587 26.25788774493524 28.09905347060777 24.128196612421124 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 1.0 14 1.5 15 5.0 16 11.5 17 14.0 18 19.5 19 28.5 20 44.5 21 57.0 22 66.0 23 109.0 24 165.5 25 188.0 26 235.0 27 315.0 28 421.5 29 495.0 30 529.5 31 664.0 32 912.5 33 1061.0 34 1153.0 35 1376.0 36 1642.5 37 1778.0 38 1941.0 39 2376.0 40 2835.0 41 3069.0 42 3116.0 43 3180.5 44 3232.5 45 3179.0 46 3138.0 47 3012.5 48 2744.0 49 2471.0 50 2341.0 51 2163.5 52 1810.0 53 1489.5 54 1345.0 55 1261.0 56 1029.0 57 773.5 58 666.0 59 565.5 60 438.5 61 355.5 62 299.0 63 288.5 64 257.0 65 232.5 66 216.0 67 203.0 68 208.0 69 203.5 70 186.0 71 178.0 72 157.0 73 144.0 74 138.5 75 125.0 76 118.5 77 106.5 78 87.0 79 73.0 80 59.5 81 43.5 82 34.0 83 27.0 84 28.0 85 20.0 86 7.0 87 3.0 88 3.5 89 2.5 90 1.0 91 0.5 92 0.0 93 2.0 94 2.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 48176.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.65410162736632 #Duplication Level Percentage of deduplicated Percentage of total 1 77.39516076436445 49.26519428761209 2 11.765473162460054 14.978412487545667 3 4.138133437683428 7.90227499169711 4 2.197873866823192 5.5961474593158425 5 1.4609013239418247 4.649618067087347 6 0.8478445183590947 3.2381268681501165 7 0.5967521033065937 2.659000332115576 8 0.42066131872432005 2.1421454666223845 9 0.28370181960477403 1.625290601129193 >10 0.8902367442770496 7.642809697774826 >50 0.0 0.0 >100 0.0032609404552272877 0.3009797409498506 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT 145 0.3009797409498506 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0020757223513782797 0.0 2 0.0 0.0 0.0 0.0020757223513782797 0.0 3 0.0 0.0 0.0 0.0020757223513782797 0.0 4 0.0 0.0 0.0 0.0020757223513782797 0.0 5 0.0 0.0 0.0 0.0020757223513782797 0.0 6 0.0 0.0 0.0 0.0020757223513782797 0.0 7 0.0 0.0 0.0 0.0020757223513782797 0.0 8 0.0 0.0 0.0 0.0020757223513782797 0.0 9 0.0 0.0 0.0 0.0020757223513782797 0.0 10 0.0 0.0 0.0 0.0020757223513782797 0.0 11 0.0 0.0 0.0 0.0020757223513782797 0.0 12 0.0 0.0 0.0 0.0020757223513782797 0.0 13 0.0 0.0 0.0 0.0020757223513782797 0.0 14 0.0 0.0 0.0 0.0020757223513782797 0.0 15 0.0 0.0 0.0 0.0020757223513782797 0.0 16 0.0 0.0 0.0 0.0020757223513782797 0.0 17 0.0 0.0 0.0 0.0020757223513782797 0.0 18 0.0 0.0 0.0 0.0020757223513782797 0.0 19 0.0 0.0 0.0 0.0020757223513782797 0.0 20 0.0 0.0 0.0 0.0020757223513782797 0.0 21 0.0 0.0 0.0 0.0020757223513782797 0.0 22 0.0 0.0 0.0 0.004151444702756559 0.0 23 0.0 0.0 0.0 0.004151444702756559 0.0 24 0.0 0.0 0.0 0.004151444702756559 0.0 25 0.0 0.0 0.0 0.004151444702756559 0.0 26 0.0 0.0 0.0 0.004151444702756559 0.0 27 0.0 0.0 0.0 0.004151444702756559 0.0 28 0.0 0.0 0.0 0.004151444702756559 0.0 29 0.0 0.0 0.0 0.006227167054134839 0.0 30 0.0 0.0 0.0 0.010378611756891398 0.0 31 0.0 0.0 0.0 0.012454334108269677 0.0 32 0.0 0.0 0.0 0.016605778811026237 0.0 33 0.0 0.0 0.0 0.026984390567917637 0.0 34 0.0 0.0 0.0 0.03736300232480903 0.0 35 0.0 0.0 0.0 0.06227167054134839 0.0 36 0.0 0.0 0.0 0.09340750581202259 0.0 37 0.0 0.0 0.0 0.1432248422451013 0.0 38 0.0 0.0 0.0 0.21795084689471936 0.0 39 0.0 0.0 0.0 0.31966124211225505 0.0 40 0.0 0.0 0.0 0.44628030554633014 0.0 41 0.0 0.0 0.0 0.5832779807372965 0.0 42 0.0 0.0 0.0 0.7119727665227499 0.0 43 0.0 0.0 0.0 0.927847891066091 0.0 44 0.0 0.0 0.0 1.2059946861507804 0.0 45 0.0 0.0 0.0 1.5256559282630355 0.0 46 0.0 0.0 0.0 1.9117402856193955 0.0 47 0.0 0.0 0.0 2.3040518100298906 0.0 48 0.0 0.0 0.0 2.692211889737629 0.0 49 0.0 0.0 0.0 3.130189305878446 0.0 50 0.0 0.0 0.0 3.4975921620724013 0.0 51 0.0 0.0 0.0 3.8193291265360347 0.0 52 0.0 0.0 0.0 4.24692793091996 0.0 53 0.0 0.0 0.0 4.570740617734971 0.0 54 0.0 0.0 0.0 5.017020923281302 0.0 55 0.0 0.0 0.0 5.4799070076386585 0.0 56 0.0 0.0 0.0 5.986383261374958 0.0 57 0.0 0.0 0.0 6.463799402191963 0.0 58 0.0 0.0 0.0 6.978578545333776 0.0 59 0.0 0.0 0.0 7.383344403852541 0.0 60 0.0 0.0 0.0 7.858684822318167 0.0 61 0.0 0.0 0.0 8.197027565592826 0.0 62 0.0 0.0 0.0 8.610096313517104 0.0 63 0.0 0.0 0.0 9.031467950846896 0.0 64 0.0 0.0 0.0 9.490202590501495 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAA 15 0.0022119458 70.0 35 CTCGAAT 15 0.0022119458 70.0 33 GCAGCGT 15 0.0022119458 70.0 1 CAGCGTC 20 0.0069118557 52.5 2 AGCGTCA 20 0.0069118557 52.5 3 GAATAAG 20 0.0069118557 52.5 36 TCAGATG 20 0.0069118557 52.5 7 TCGAATA 20 0.0069118557 52.5 34 CGTATGC 50 6.03668E-8 48.999996 41 CGTCTTC 50 6.03668E-8 48.999996 48 TATGCCG 50 6.03668E-8 48.999996 43 CCGTCTT 50 6.03668E-8 48.999996 47 GTATGCC 50 6.03668E-8 48.999996 42 TCGTATG 50 6.03668E-8 48.999996 40 ATGCCGT 50 6.03668E-8 48.999996 44 GCCGTCT 50 6.03668E-8 48.999996 46 ATCTCGT 45 1.6521371E-6 46.666664 37 CTCGTAT 45 1.6521371E-6 46.666664 39 TCTCGTA 45 1.6521371E-6 46.666664 38 AATCTCG 45 1.6521371E-6 46.666664 36 >>END_MODULE