##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781140_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 104798 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.02939941601939 34.0 34.0 34.0 31.0 34.0 2 33.05420904979103 34.0 34.0 34.0 31.0 34.0 3 33.11856142292792 34.0 34.0 34.0 31.0 34.0 4 33.221359186244015 34.0 34.0 34.0 32.0 34.0 5 33.19337201091624 34.0 34.0 34.0 32.0 34.0 6 36.40341418729365 38.0 37.0 38.0 34.0 38.0 7 36.29147502814939 38.0 37.0 38.0 34.0 38.0 8 36.02706158514476 38.0 36.0 38.0 32.0 38.0 9 36.00696578178973 38.0 36.0 38.0 32.0 38.0 10-11 35.938758373251396 38.0 36.0 38.0 32.0 38.0 12-13 35.87108055497242 38.0 36.0 38.0 31.0 38.0 14-15 35.8655508692914 38.0 36.0 38.0 31.0 38.0 16-17 35.795139220214125 38.0 36.0 38.0 31.0 38.0 18-19 35.80271570068131 38.0 36.0 38.0 31.0 38.0 20-21 35.73190328059696 38.0 36.0 38.0 31.0 38.0 22-23 35.80892765129106 38.0 36.0 38.0 31.0 38.0 24-25 35.78979083570297 38.0 36.0 38.0 31.0 38.0 26-27 35.517342888223055 38.0 36.0 38.0 31.0 38.0 28-29 35.50681787820378 38.0 36.0 38.0 31.0 38.0 30-31 35.52970476535812 38.0 36.0 38.0 31.0 38.0 32-33 35.45771388766961 38.0 36.0 38.0 31.0 38.0 34-35 35.46918834328899 38.0 36.0 38.0 31.0 38.0 36-37 35.44166396305273 38.0 36.0 38.0 31.0 38.0 38-39 35.39456382755396 38.0 36.0 38.0 31.0 38.0 40-41 35.41829519647321 38.0 36.0 38.0 31.0 38.0 42-43 35.41675413652932 38.0 36.0 38.0 31.0 38.0 44-45 35.4049695604878 38.0 36.0 38.0 31.0 38.0 46-47 35.40357640412985 38.0 36.0 38.0 31.0 38.0 48-49 35.39474512872383 38.0 36.0 38.0 31.0 38.0 50-51 35.305955266321874 38.0 36.0 38.0 31.0 38.0 52-53 35.33996832000611 38.0 36.0 38.0 31.0 38.0 54-55 35.35396667875341 38.0 36.0 38.0 31.0 38.0 56-57 35.27420847726101 38.0 36.0 38.0 29.5 38.0 58-59 35.26991450218516 38.0 36.0 38.0 29.5 38.0 60-61 35.28606461955381 38.0 36.0 38.0 30.0 38.0 62-63 35.247394988453976 38.0 36.0 38.0 28.5 38.0 64-65 35.17180671386859 38.0 35.5 38.0 27.0 38.0 66-67 35.17067596709861 37.5 35.5 38.0 27.5 38.0 68-69 35.07186205843623 37.0 35.0 38.0 27.0 38.0 70-71 35.01880283974885 37.5 35.0 38.0 27.0 38.0 72-73 34.954493406362715 37.5 35.0 38.0 27.0 38.0 74-75 34.9651567778011 38.0 35.0 38.0 27.0 38.0 76 33.94017061394302 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 4.0 21 5.0 22 25.0 23 34.0 24 101.0 25 210.0 26 419.0 27 732.0 28 1244.0 29 1978.0 30 3036.0 31 4249.0 32 5878.0 33 7995.0 34 10447.0 35 13831.0 36 19811.0 37 34797.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.80619859157618 19.454569743697398 10.197713696826275 25.541517967900152 2 23.60159545029485 21.69697894997996 30.93379644649707 23.767629153228114 3 20.1129792553293 23.37162922956545 29.811637626672265 26.703753888432985 4 14.147216549934157 18.25607358919063 37.667703582129434 29.929006278745778 5 13.618580507261587 35.25639802286303 36.32798335846104 14.79703811141434 6 29.272505200480925 38.99692742227905 18.356266340960705 13.374301036279318 7 28.371724651233805 30.518712189163917 22.25710414320884 18.852459016393443 8 25.607358919063337 35.770720815282736 19.263726406992497 19.358193858661423 9 24.57298803412279 16.487910074619744 21.41453081165671 37.524571079600754 10-11 24.85352773907899 25.7266360045039 27.799194641119108 21.620641615298002 12-13 24.965171091051356 23.26141720261837 26.881238191568542 24.89217351476173 14-15 22.920284738258363 24.50953262466841 23.88118093856753 28.689001698505695 16-17 23.87688696349167 27.929445218420202 24.94656386572263 23.247103952365503 18-19 23.147865417278958 27.14126223782897 26.389339491211665 23.321532853680413 20-21 22.62495467470753 27.200423672207485 26.20612988797496 23.96849176511002 22-23 23.251875035783126 27.06540201148877 26.375980457642324 23.306742495085782 24-25 23.30006297830111 27.40033206740587 26.54821656901849 22.75138838527453 26-27 22.558159506860818 27.775339224030994 26.73285749728048 22.933643771827704 28-29 23.466096681234376 26.55775873585374 27.372182675241895 22.603961907669994 30-31 23.58775930838375 26.393156357945763 27.37504532529247 22.644039008378023 32-33 22.561499265253154 27.81684764976431 26.24143590526537 23.38021717971717 34-35 23.184125651252888 26.478081642779443 27.986221111089904 22.351571594877765 36-37 23.266188286035995 26.715681596977042 26.945647817706448 23.07248229928052 38-39 22.375427011965876 27.221416439245022 27.549666978377452 22.85348957041165 40-41 22.453672780014884 26.167961220633984 27.96570545239413 23.412660546957003 42-43 23.251875035783126 26.25908891391057 27.40701158419054 23.082024466115765 44-45 22.031431897555297 26.968549018111034 27.624095879692362 23.37592320464131 46-47 22.86160041222161 25.812038397679345 27.35214412488788 23.974217065211167 48-49 22.5672245653543 25.3349300559171 27.89175365942098 24.206091719307622 50-51 21.808145193610564 25.5978167522281 28.173247581060707 24.42079047310063 52-53 21.778564476421305 25.14647226092101 29.263917250329204 23.81104601232848 54-55 20.977499570602493 25.748582988224967 29.025840187789843 24.2480772533827 56-57 21.16834290730739 25.849729956678562 28.204736731617015 24.777190404397032 58-59 20.995629687589457 25.653161319872513 28.76199927479532 24.589209717742705 60-61 21.026164621462243 25.765758888528406 28.35598007595565 24.852096414053705 62-63 19.64779862211111 26.553464760777878 28.543483654268208 25.2552529628428 64-65 20.200767190213554 26.86119964121453 27.512929636061756 25.425103532510164 66-67 20.311456325502395 26.446592492223136 26.91654420885895 26.32540697341552 68-69 20.123952747189833 27.019599610679595 26.827802057291173 26.028645584839406 70-71 20.58865627206626 26.394110574629288 26.639344262295083 26.37788889100937 72-73 20.706502032481534 25.55010591805187 26.301551556327414 27.441840493139182 74-75 20.70745624916506 25.63026011946793 26.58113704460009 27.081146586766923 76 21.127311589915838 25.64361915303727 26.343059982060723 26.88600927498616 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.5 11 1.0 12 0.0 13 0.0 14 1.5 15 5.5 16 16.5 17 25.0 18 25.0 19 41.5 20 68.5 21 79.0 22 100.0 23 163.0 24 275.0 25 345.0 26 403.5 27 496.0 28 636.5 29 743.0 30 922.5 31 1171.5 32 1616.0 33 1991.0 34 2152.0 35 2576.0 36 3236.0 37 3633.0 38 3905.0 39 4781.5 40 5890.5 41 6585.5 42 6776.0 43 6879.5 44 6999.0 45 6952.0 46 6889.0 47 6689.5 48 6144.5 49 5497.0 50 5195.0 51 4816.5 52 3973.0 53 3227.5 54 2947.0 55 2689.0 56 2145.5 57 1660.0 58 1460.0 59 1254.0 60 967.5 61 829.0 62 771.0 63 701.5 64 679.5 65 695.5 66 687.0 67 710.0 68 738.5 69 750.5 70 733.0 71 732.0 72 695.5 73 638.5 74 587.5 75 557.0 76 532.5 77 444.5 78 330.5 79 280.0 80 248.5 81 195.0 82 144.5 83 116.0 84 88.0 85 49.5 86 27.0 87 15.0 88 13.0 89 11.5 90 6.5 91 2.0 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 104798.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.50762419130136 #Duplication Level Percentage of deduplicated Percentage of total 1 69.04381011121177 34.18195003721445 2 15.211148160283717 15.061356132750625 3 5.265693965268007 7.820759938166759 4 2.756201453269857 5.458119429760109 5 1.7365996569203785 4.298746159277849 6 1.2412543607732784 3.6870932651386474 7 0.9213037025615326 3.1928090230729596 8 0.7073607925524739 2.8015801828279163 9 0.5319661546171193 2.370274241874845 >10 2.567314920108706 19.824805816904902 >50 0.015419308829481719 0.4990553254833108 >100 0.0 0.0 >500 0.0019274136036852149 0.8034504475276245 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT 842 0.8034504475276245 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 9.542166835244947E-4 0.0 20 0.0 0.0 0.0 9.542166835244947E-4 0.0 21 0.0 0.0 0.0 9.542166835244947E-4 0.0 22 0.0 0.0 0.0 0.0019084333670489895 0.0 23 0.0 0.0 0.0 0.0019084333670489895 0.0 24 0.0 0.0 0.0 0.002862650050573484 0.0 25 0.0 0.0 0.0 0.002862650050573484 0.0 26 0.0 0.0 0.0 0.003816866734097979 0.0 27 0.0 0.0 0.0 0.009542166835244947 0.0 28 0.0 0.0 0.0 0.010496383518769442 0.0 29 0.0 0.0 0.0 0.0181301169869654 0.0 30 0.0 0.0 0.0 0.027672283822210347 0.0 31 0.0 0.0 0.0 0.03435180060688181 0.0 32 0.0 0.0 0.0 0.04771083417622474 0.0 33 0.0 0.0 0.0 0.0734746846313861 0.0 34 0.0 0.0 0.0 0.10210118513712094 0.0 35 0.0 0.0 0.0 0.16889635298383557 0.0 36 0.0 0.0 0.0 0.26336380465276055 0.0 37 0.0 0.0 0.0 0.43035172426954715 0.0 38 0.0 0.0 0.0 0.626920361075593 0.0 39 0.0 0.0 0.0 0.8673829653237657 0.0 40 0.0 0.0 0.0 1.1202503864577569 0.0 41 0.0 0.0 0.0 1.4103322582492033 0.0 42 0.0 0.0 0.0 1.7672092978873644 0.0 43 0.0 0.0 0.0 2.216645355827401 0.0 44 0.0 0.0 0.0 2.774862115689231 0.0 45 0.0 0.0 0.0 3.495295711750224 0.0 46 0.0 0.0 0.0 4.245310025000477 0.0 47 0.0 0.0 0.0 5.0525773392622 0.0 48 0.0 0.0 0.0 5.76823985190557 0.0 49 0.0 0.0 0.0 6.504895131586481 0.0 50 0.0 0.0 0.0 7.217694994179278 0.0 51 0.0 0.0 0.0 7.895188839481669 0.0 52 0.0 0.0 0.0 8.554552567797096 0.0 53 0.0 0.0 0.0 9.231092196415963 0.0 54 0.0 0.0 0.0 9.978243859615642 0.0 55 0.0 0.0 0.0 10.778831657092693 0.0 56 0.0 0.0 0.0 11.59564113818966 0.0 57 0.0 0.0 0.0 12.405771102501957 0.0 58 0.0 0.0 0.0 13.207313116662531 0.0 59 0.0 0.0 0.0 13.974503330216226 0.0 60 0.0 0.0 0.0 14.735968243668772 0.0 61 0.0 0.0 0.0 15.46594400656501 0.0 62 0.0 0.0 0.0 16.181606519208383 0.0 63 0.0 0.0 0.0 16.905856982003474 0.0 64 0.0 0.0 0.0 17.632015878165614 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGCAT 15 0.002219248 70.00001 62 CGGGCTA 15 0.002219248 70.00001 41 ATGTATC 20 7.8950776E-5 70.0 16 CTCGTAT 110 0.0 60.454544 39 TCGTATG 115 0.0 57.826084 40 TCTCGTA 85 0.0 57.64706 38 TGTATCC 25 2.3809842E-4 55.999996 17 TACAGGA 25 2.3809842E-4 55.999996 7 CGTATGC 120 0.0 55.41667 41 GCCGTCT 120 0.0 55.41667 46 ATCTCGT 90 0.0 54.444447 37 TATGCCG 125 0.0 53.200005 43 CCGTCTT 120 0.0 52.500004 47 GGTCGGG 20 0.006934499 52.5 54 TAGCGAG 20 0.006934499 52.5 28 GAATCGT 20 0.006934499 52.5 25 CCCAACG 20 0.006934499 52.5 21 CTACGGG 20 0.006934499 52.5 38 AAATTCG 20 0.006934499 52.5 62 CCAACGT 20 0.006934499 52.5 22 >>END_MODULE