##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781139_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 41994 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27311044434919 34.0 34.0 34.0 30.0 34.0 2 32.39693765776063 34.0 34.0 34.0 31.0 34.0 3 32.41884554936419 34.0 34.0 34.0 31.0 34.0 4 32.47506786683812 34.0 34.0 34.0 31.0 34.0 5 32.517669190836784 34.0 34.0 34.0 31.0 34.0 6 35.615683192837075 38.0 37.0 38.0 31.0 38.0 7 35.57298661713578 38.0 37.0 38.0 31.0 38.0 8 35.53621945992285 38.0 37.0 38.0 31.0 38.0 9 35.663737676810975 38.0 37.0 38.0 31.0 38.0 10-11 35.577130066199935 38.0 37.0 38.0 31.0 38.0 12-13 35.54113682907082 38.0 37.0 38.0 31.0 38.0 14-15 35.506108015430776 38.0 37.0 38.0 31.0 38.0 16-17 35.50627470591037 38.0 37.0 38.0 31.0 38.0 18-19 35.51170405295995 38.0 37.0 38.0 31.0 38.0 20-21 35.479211315902276 38.0 37.0 38.0 31.0 38.0 22-23 35.49026051340668 38.0 37.0 38.0 31.0 38.0 24-25 35.48273562889936 38.0 37.0 38.0 31.0 38.0 26-27 35.441777396770966 38.0 36.5 38.0 31.0 38.0 28-29 35.482461780254326 38.0 37.0 38.0 31.0 38.0 30-31 35.53868409772825 38.0 37.0 38.0 31.0 38.0 32-33 35.52507501071582 38.0 37.0 38.0 31.0 38.0 34-35 35.562425584607325 38.0 37.0 38.0 31.0 38.0 36-37 35.427061008715526 38.0 37.0 38.0 31.0 38.0 38-39 35.44168214506834 38.0 37.0 38.0 31.0 38.0 40-41 35.471055388865075 38.0 37.0 38.0 31.0 38.0 42-43 35.5076915749869 38.0 37.0 38.0 31.0 38.0 44-45 35.56283040434347 38.0 37.0 38.0 31.0 38.0 46-47 35.520919655188834 38.0 37.0 38.0 31.0 38.0 48-49 35.47453207601086 38.0 37.0 38.0 31.0 38.0 50-51 35.39418726484736 38.0 36.5 38.0 30.5 38.0 52-53 35.45927989712816 38.0 37.0 38.0 31.0 38.0 54-55 35.44412296994808 38.0 37.0 38.0 31.0 38.0 56-57 35.37920893460971 38.0 36.5 38.0 29.5 38.0 58-59 35.37564890222413 38.0 36.5 38.0 31.0 38.0 60-61 35.370374339191315 38.0 36.5 38.0 30.0 38.0 62-63 35.357539172262705 38.0 36.5 38.0 30.0 38.0 64-65 35.370052864694955 38.0 36.0 38.0 30.5 38.0 66-67 35.27165785588417 38.0 36.0 38.0 27.0 38.0 68-69 34.97632995189789 38.0 36.0 38.0 26.5 38.0 70-71 35.206720007620135 38.0 36.0 38.0 27.0 38.0 72-73 35.22728246892413 38.0 36.0 38.0 27.5 38.0 74-75 35.24261799304662 38.0 36.0 38.0 27.0 38.0 76 34.27644425394104 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 17.0 14 58.0 15 99.0 16 164.0 17 199.0 18 237.0 19 190.0 20 164.0 21 173.0 22 147.0 23 178.0 24 201.0 25 243.0 26 292.0 27 366.0 28 497.0 29 551.0 30 704.0 31 962.0 32 1218.0 33 1655.0 34 2448.0 35 3713.0 36 7293.0 37 20219.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.856408058294036 19.478973186645714 9.175120255274564 26.489498499785686 2 21.422107920179073 20.84583511930276 33.47621088726961 24.25584607324856 3 18.47644901652617 22.45320760108587 30.644854026765728 28.42548935562223 4 13.313806734295374 16.38567414392532 37.33628613611468 32.96423298566462 5 12.828023050912035 33.464304424441586 37.005286469495644 16.702386055150736 6 29.032718959851405 38.086393294280136 18.493118064485405 14.387769681383055 7 26.727627756346145 30.432918988426916 23.058055912749438 19.781397342477497 8 23.572415106920037 36.826689527075295 20.571986474258228 19.02890889174644 9 23.050912035052626 16.283278563604327 22.21507834452541 38.45073105681764 10-11 23.592656093727676 25.42863266180883 28.536219459922847 22.44249178454065 12-13 23.349764252036003 23.684335857503452 28.850550078582653 24.115349811877888 14-15 21.376863361432584 24.791636900509598 25.447683002333665 28.38381673572415 16-17 21.57570129066057 28.676715721293515 26.070391008239273 23.67719197980664 18-19 21.283992951374007 28.194503976758583 27.44439681859313 23.077106253274277 20-21 21.50188122112683 27.90279563747202 27.393199028432637 23.20212411296852 22-23 21.36257560603896 27.54083916750012 27.759918083535744 23.33666714292518 24-25 21.600704862599418 27.316997666333286 27.42296518550269 23.659332285564606 26-27 20.948230699623753 27.987331523550985 27.869457541553555 23.194980235271707 28-29 21.11015859408487 27.288422155546034 28.601705005476973 22.99971424489213 30-31 21.344715911796925 27.744439681859312 27.955184073915323 22.955660332428444 32-33 20.772015049769017 27.550364337762538 28.256417583464305 23.421203029004143 34-35 21.566176120398154 27.062199361813594 27.977806353288564 23.39381816449969 36-37 21.257798733152356 27.782540362908986 27.66109444206315 23.298566461875506 38-39 20.877982568938418 27.487260084774018 28.66242796589989 22.972329380387674 40-41 21.03276658570272 27.394389674715434 28.474305853217125 23.09853788636472 42-43 21.112539886650474 27.715864171072056 28.290946325665573 22.880649616611898 44-45 20.836309949040338 27.617040529599468 28.219507548697432 23.327141972662762 46-47 20.879173215221222 27.863504310139543 28.423108063056628 22.834214411582607 48-49 20.65175977520598 27.62537505357908 28.721960280040005 23.00090489117493 50-51 20.67676334714483 27.814687812544648 28.379054150592943 23.12949468971758 52-53 20.648187836357575 27.662285088345957 28.73981997428204 22.94970710101443 54-55 20.495785112158877 27.622993761013475 28.442158403581463 23.439062723246177 56-57 20.627946849549936 27.76468066866695 28.45406486640949 23.153307615373624 58-59 20.64104395866076 27.61346859075106 28.78982711815974 22.955660332428444 60-61 20.570795827975424 27.501547840167646 28.406439015097394 23.52121731675954 62-63 20.366004667333428 27.827784921655475 28.78149259418012 23.024717816830975 64-65 20.699385626518072 27.909939515168837 28.139734247749676 23.250940610563415 66-67 20.570795827975424 27.607515359337047 28.50645330285279 23.31523550983474 68-69 20.420774396342335 27.553936276610948 28.557651093013288 23.467638234033434 70-71 21.288755536505217 27.478925560794398 27.993284754964996 23.239034147735392 72-73 20.70652950421489 27.275325046435206 28.3564318712197 23.661713578130207 74-75 21.04824498737915 27.55512692289375 28.102824212982807 23.293803876744295 76 20.802971853121875 27.644425394103923 27.801590703433828 23.751012049340382 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.5 12 3.0 13 3.0 14 4.0 15 10.5 16 22.5 17 29.0 18 43.0 19 67.5 20 123.5 21 169.0 22 191.0 23 246.0 24 313.0 25 347.0 26 404.5 27 510.0 28 627.5 29 697.0 30 779.5 31 922.0 32 1084.5 33 1187.0 34 1291.0 35 1510.0 36 1724.5 37 1824.0 38 1864.5 39 2033.0 40 2236.0 41 2228.5 42 2146.0 43 2182.5 44 2180.0 45 2098.5 46 2056.0 47 2036.0 48 1876.0 49 1692.0 50 1648.0 51 1490.0 52 1225.5 53 1087.5 54 1056.0 55 1003.5 56 894.5 57 789.0 58 740.0 59 663.5 60 552.0 61 471.5 62 426.0 63 402.0 64 342.0 65 310.5 66 301.0 67 287.0 68 274.0 69 259.5 70 263.5 71 269.0 72 248.5 73 215.5 74 190.5 75 178.0 76 170.0 77 141.0 78 110.5 79 101.0 80 87.0 81 66.5 82 51.0 83 42.0 84 31.0 85 16.0 86 9.5 87 7.0 88 6.5 89 5.0 90 3.5 91 2.0 92 1.0 93 0.5 94 0.5 95 1.0 96 1.0 97 0.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 41994.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.31833119017003 #Duplication Level Percentage of deduplicated Percentage of total 1 81.78722369181185 64.05438872219841 2 13.135090759828513 20.57436776682383 3 3.037489738210344 7.136733819117016 4 1.061145063699109 3.324284421584036 5 0.4499984797348658 1.7621564985474114 6 0.2128371187935176 1.0001428775539363 7 0.13986439235002585 0.7667762061246846 8 0.06081060536957645 0.3810068104967376 9 0.04256742375870352 0.30004286326618085 >10 0.07297272644349174 0.7001000142877554 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 0.0 0.0 23 0.0 0.0 0.0 0.00476258513120922 0.0 24 0.0 0.0 0.0 0.01190646282802305 0.0 25 0.0 0.0 0.0 0.01190646282802305 0.0 26 0.0 0.0 0.0 0.01190646282802305 0.0 27 0.0 0.0 0.0 0.01905034052483688 0.0 28 0.0 0.0 0.0 0.028575510787255322 0.0 29 0.0 0.0 0.0 0.040481973615278374 0.0 30 0.0 0.0 0.0 0.050007143877696815 0.0 31 0.0 0.0 0.0 0.057151021574510644 0.0 32 0.0 0.0 0.0 0.06429489927132448 0.0 33 0.0 0.0 0.0 0.08572653236176597 0.0 34 0.0 0.0 0.0 0.11192075058341668 0.0 35 0.0 0.0 0.0 0.15240272419869505 0.0 36 0.0 0.0 0.0 0.20717245320760108 0.0 37 0.0 0.0 0.0 0.2857551078725532 0.0 38 0.0 0.0 0.0 0.3810068104967376 0.0 39 0.0 0.0 0.0 0.4834023908177359 0.0 40 0.0 0.0 0.0 0.6215173596228033 0.0 41 0.0 0.0 0.0 0.7120064771157785 0.0 42 0.0 0.0 0.0 0.8572653236176596 0.0 43 0.0 0.0 0.0 1.019193218078773 0.0 44 0.0 0.0 0.0 1.2549411820736296 0.0 45 0.0 0.0 0.0 1.447825879887603 0.0 46 0.0 0.0 0.0 1.7050054769729008 0.0 47 0.0 0.0 0.0 1.9193218078773158 0.0 48 0.0 0.0 0.0 2.1122065056912893 0.0 49 0.0 0.0 0.0 2.3384292994237272 0.0 50 0.0 0.0 0.0 2.5789398485497927 0.0 51 0.0 0.0 0.0 2.77896842406058 0.0 52 0.0 0.0 0.0 2.967090536743344 0.0 53 0.0 0.0 0.0 3.212363671000619 0.0 54 0.0 0.0 0.0 3.469543268085917 0.0 55 0.0 0.0 0.0 3.6862408915559364 0.0 56 0.0 0.0 0.0 3.8767442968043055 0.0 57 0.0 0.0 0.0 4.102967090536743 0.0 58 0.0 0.0 0.0 4.36490927275325 0.0 59 0.0 0.0 0.0 4.524455874648759 0.0 60 0.0 0.0 0.0 4.712577987331524 0.0 61 0.0 0.0 0.0 4.910225270276706 0.0 62 0.0 0.0 0.0 5.115016430918702 0.0 63 0.0 0.0 0.0 5.310282421298281 0.0 64 0.0 0.0 0.0 5.512692289374672 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGGG 15 0.002209951 70.0 11 TTGTCTA 15 0.002209951 70.0 20 AGAACTG 15 0.002209951 70.0 37 GTCCCAA 25 2.3644877E-4 55.999996 51 TTAATGT 20 0.0069056684 52.500004 5 CCAGGAT 20 0.0069056684 52.500004 3 GAGAACT 20 0.0069056684 52.500004 36 TTTTCAC 20 0.0069056684 52.500004 47 TATATCC 40 0.002393048 35.000004 5 CCACCAA 45 0.0042617605 31.111109 47 AATATTA 50 0.0071326876 27.999998 53 TATTATA 85 0.0037311092 20.588236 2 >>END_MODULE