##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781138_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 134233 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.617240171939837 34.0 33.0 34.0 24.0 34.0 2 31.921986396787677 34.0 34.0 34.0 27.0 34.0 3 31.996982858164536 34.0 34.0 34.0 27.0 34.0 4 32.07911616368553 34.0 34.0 34.0 27.0 34.0 5 32.10076508757161 34.0 34.0 34.0 27.0 34.0 6 35.17673746396191 38.0 36.0 38.0 27.0 38.0 7 35.138512884313094 38.0 36.0 38.0 27.0 38.0 8 34.920414503140066 38.0 36.0 38.0 27.0 38.0 9 35.21565486877295 38.0 36.0 38.0 27.0 38.0 10-11 35.104746969821136 38.0 36.0 38.0 27.0 38.0 12-13 35.0678000193693 38.0 36.0 38.0 27.0 38.0 14-15 35.01680287261702 38.0 36.0 38.0 27.0 38.0 16-17 34.973132538198506 38.0 36.0 38.0 27.0 38.0 18-19 35.003341205217794 38.0 36.0 38.0 27.0 38.0 20-21 34.93818956590406 38.0 36.0 38.0 27.0 38.0 22-23 34.995425863982774 38.0 36.0 38.0 27.0 38.0 24-25 35.01544329635782 38.0 36.0 38.0 27.0 38.0 26-27 34.942823299784706 38.0 36.0 38.0 27.0 38.0 28-29 35.022706785961724 38.0 36.0 38.0 27.0 38.0 30-31 35.08325076546006 38.0 36.0 38.0 27.0 38.0 32-33 35.052971325977964 38.0 36.0 38.0 27.0 38.0 34-35 35.07758896843548 38.0 36.0 38.0 27.0 38.0 36-37 34.96545186355069 38.0 36.0 38.0 27.0 38.0 38-39 34.97101308918076 38.0 36.0 38.0 27.0 38.0 40-41 34.94976272600627 38.0 36.0 38.0 27.0 38.0 42-43 35.03075249752297 38.0 36.0 38.0 27.0 38.0 44-45 35.01865785611586 38.0 36.0 38.0 27.0 38.0 46-47 35.01565561374625 38.0 36.0 38.0 27.0 38.0 48-49 34.9745628869205 38.0 36.0 38.0 27.0 38.0 50-51 34.85833215379229 38.0 35.5 38.0 27.0 38.0 52-53 34.93660277279059 38.0 36.0 38.0 27.0 38.0 54-55 34.90861412618358 38.0 36.0 38.0 27.0 38.0 56-57 34.84067256188865 38.0 35.5 38.0 27.0 38.0 58-59 34.849802209590784 38.0 36.0 38.0 27.0 38.0 60-61 34.86058569800272 38.0 35.5 38.0 27.0 38.0 62-63 34.817686410942166 38.0 35.5 38.0 27.0 38.0 64-65 34.84666214716202 38.0 35.5 38.0 27.0 38.0 66-67 34.74697354599837 38.0 35.0 38.0 27.0 38.0 68-69 34.48877697734537 38.0 34.5 38.0 25.0 38.0 70-71 34.69303747960636 38.0 35.0 38.0 26.5 38.0 72-73 34.711967250974055 38.0 35.0 38.0 27.0 38.0 74-75 34.71509241393696 38.0 35.0 38.0 27.0 38.0 76 33.50326670788852 37.0 33.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 18.0 14 58.0 15 142.0 16 291.0 17 442.0 18 581.0 19 599.0 20 673.0 21 663.0 22 808.0 23 928.0 24 1077.0 25 1279.0 26 1467.0 27 1793.0 28 2244.0 29 2714.0 30 3301.0 31 4159.0 32 5354.0 33 6995.0 34 9414.0 35 13585.0 36 22596.0 37 53051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.705109771814676 17.957581220713237 8.820483785656284 25.516825221815797 2 23.188783682104997 20.23272965664181 32.04279126593312 24.53569539532008 3 19.38941988929697 21.827717476328473 30.493246817101603 28.28961581727295 4 13.271699209583337 16.51009811298265 37.66435973270358 32.553842944730434 5 13.300753167998927 33.70482668196345 36.949930344997135 16.04448980504049 6 29.775837536224326 38.036101405764605 18.561754561098983 13.626306496912086 7 28.868460065706646 30.126719957089538 22.130921606460408 18.873898370743408 8 25.887076948291405 35.30651926128448 19.338761705392862 19.46764208503125 9 24.90445717521027 16.232968048095476 21.237698628504166 37.62487614819009 10-11 24.83778206551295 24.702941899532902 28.383109965507735 22.07616606944641 12-13 24.94058837990658 23.0293593974656 27.75770488627983 24.27234733634799 14-15 23.075547741613462 24.138997116953355 24.83442968569577 27.951025455737412 16-17 23.05133610960047 27.83778951524588 25.749256889140526 23.361617486013124 18-19 22.309715196710197 27.48206476797807 27.210149516139847 22.998070519171886 20-21 22.54289183732763 27.479084874807235 27.02092629979215 22.957096988072976 22-23 22.610684406964012 26.718467142952925 27.447423509867168 23.223424940215892 24-25 22.61664419330567 27.131182347112855 27.100265955465495 23.151907504115975 26-27 21.92158411120961 27.314818263765243 27.274217219312686 23.489380405712453 28-29 22.333181855430485 27.23249871492107 28.06575134281436 22.368568086834088 30-31 22.726900240626374 27.455990702733306 27.448540969806235 22.368568086834088 32-33 22.08808564212973 27.679855177191897 27.136769646808162 23.09528953387021 34-35 22.611801866903072 26.869324234726182 27.739080553962143 22.779793344408603 36-37 22.681829356417573 27.016083973389556 27.189290263944038 23.112796406248837 38-39 22.151408372009865 27.54129014474831 27.692519723167923 22.614781760073903 40-41 22.450142662385552 26.735229042038846 28.092942867998183 22.72168542757742 42-43 22.211751208719168 27.166196091870106 27.683580043655436 22.93847265575529 44-45 21.860868787853953 27.200464863334652 27.638509159446635 23.30015718936476 46-47 22.043387244567285 26.68308091154932 27.861256173966165 23.412275669917236 48-49 21.847831755231574 26.89800570649542 28.209903674953253 23.04425886331975 50-51 22.069833796458397 26.81382372441948 27.939850856346798 23.176491622775323 52-53 21.66047097211565 26.45102173087095 28.431533229533724 23.45697406747968 54-55 21.47869748869503 27.105108281868095 28.269501538369852 23.146692691067024 56-57 21.434371577778936 26.76875284021068 28.18531955629391 23.611556025716478 58-59 21.432136657900813 26.67674863856131 28.351076113921316 23.540038589616564 60-61 21.252225607711964 26.838780329725182 28.178242310013186 23.73075175254967 62-63 20.87824901477282 26.923334798447474 28.488151199779487 23.710264987000215 64-65 21.136754747342305 26.892790893446474 28.190534369342856 23.779919989868365 66-67 21.287239352469214 26.426065125565252 28.21288356812408 24.073811953841453 68-69 21.149046806671983 26.70468513703784 27.88584029262551 24.260427763664673 70-71 21.666803245103665 26.667436472402468 27.908561978053086 23.757198304440784 72-73 21.489499601439288 26.476350822823 27.737963094023076 24.296186481714628 74-75 21.638494259980778 26.48417304239643 27.837417028599525 24.039915669023266 76 21.70852174949528 26.580647083802045 27.38000342687715 24.330827739825526 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 1.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.0 11 0.5 12 0.0 13 0.5 14 2.5 15 20.0 16 43.5 17 51.0 18 76.0 19 122.5 20 178.5 21 213.0 22 292.0 23 429.0 24 597.5 25 708.0 26 865.0 27 1092.5 28 1364.0 29 1565.0 30 1748.5 31 2159.0 32 2711.0 33 3036.0 34 3305.5 35 3892.0 36 4510.0 37 4811.0 38 5236.5 39 6102.0 40 6941.5 41 7502.5 42 7664.0 43 7767.5 44 7898.0 45 7850.5 46 7776.0 47 7683.0 48 7197.5 49 6418.0 50 6031.0 51 5638.0 52 4794.0 53 4157.5 54 3972.0 55 3682.5 56 3177.5 57 2701.5 58 2441.0 59 2209.0 60 1852.0 61 1536.0 62 1345.0 63 1232.5 64 1071.0 65 957.0 66 876.0 67 860.0 68 859.5 69 819.5 70 733.0 71 686.0 72 679.0 73 634.5 74 572.0 75 547.0 76 485.5 77 392.0 78 327.0 79 294.0 80 256.0 81 181.5 82 131.0 83 117.0 84 97.5 85 62.0 86 42.5 87 39.0 88 28.0 89 14.0 90 9.0 91 5.0 92 3.0 93 1.5 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 3.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 134233.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.333152056498776 #Duplication Level Percentage of deduplicated Percentage of total 1 73.91927099411016 44.59782616793188 2 15.256769604998333 18.409780009386665 3 4.715571634953758 8.535159014549329 4 1.9151221801029794 4.6218143079570595 5 1.0458468643115562 3.1549618946160782 6 0.6655389136528085 2.409243628615914 7 0.5148974526775902 2.1745770414130656 8 0.3346216059367553 1.6151020985897657 9 0.29017002728833025 1.5756185140762702 >10 1.3335473594527516 12.612397845537238 >50 0.00864336251497154 0.29351947732673783 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.001489946585414913 0.0 10 0.0 0.0 0.0 0.001489946585414913 0.0 11 0.0 0.0 0.0 0.001489946585414913 0.0 12 0.0 0.0 0.0 0.001489946585414913 0.0 13 0.0 0.0 0.0 0.001489946585414913 0.0 14 0.0 0.0 0.0 0.001489946585414913 0.0 15 0.0 0.0 0.0 0.001489946585414913 0.0 16 0.0 0.0 0.0 0.001489946585414913 0.0 17 0.0 0.0 0.0 0.001489946585414913 0.0 18 0.0 0.0 0.0 0.0022349198781223692 0.0 19 0.0 0.0 0.0 0.002979893170829826 0.0 20 0.0 0.0 0.0 0.003724866463537282 0.0 21 0.0 0.0 0.0 0.0044698397562447385 0.0 22 0.0 0.0 0.0 0.005214813048952195 0.0 23 0.0 0.0 0.0 0.005214813048952195 0.0 24 0.0 0.0 0.0 0.006704759634367108 0.0 25 0.0 0.0 0.0 0.00819470621978202 0.0 26 0.0 0.0 0.0 0.008939679512489477 0.0 27 0.0 0.0 0.0 0.011919572683319304 0.0 28 0.0 0.0 0.0 0.0171343857322715 0.0 29 0.0 0.0 0.0 0.02085925219580878 0.0 30 0.0 0.0 0.0 0.023839145366638607 0.0 31 0.0 0.0 0.0 0.034268771464543 0.0 32 0.0 0.0 0.0 0.04991321061139958 0.0 33 0.0 0.0 0.0 0.06704759634367108 0.0 34 0.0 0.0 0.0 0.07971214231969784 0.0 35 0.0 0.0 0.0 0.11547086036965575 0.0 36 0.0 0.0 0.0 0.1624041778102255 0.0 37 0.0 0.0 0.0 0.2428612934226308 0.0 38 0.0 0.0 0.0 0.3352379817183554 0.0 39 0.0 0.0 0.0 0.4596485216005006 0.0 40 0.0 0.0 0.0 0.598958527336795 0.0 41 0.0 0.0 0.0 0.7583828119761906 0.0 42 0.0 0.0 0.0 0.9312166158843206 0.0 43 0.0 0.0 0.0 1.1770578024777811 0.0 44 0.0 0.0 0.0 1.457167760535785 0.0 45 0.0 0.0 0.0 1.7678216235947941 0.0 46 0.0 0.0 0.0 2.102314632020442 0.0 47 0.0 0.0 0.0 2.5060901566678835 0.0 48 0.0 0.0 0.0 2.8897514024122235 0.0 49 0.0 0.0 0.0 3.2972517935232024 0.0 50 0.0 0.0 0.0 3.677188172804005 0.0 51 0.0 0.0 0.0 3.9960367420827962 0.0 52 0.0 0.0 0.0 4.369268361729232 0.0 53 0.0 0.0 0.0 4.762614260278769 0.0 54 0.0 0.0 0.0 5.158940051999136 0.0 55 0.0 0.0 0.0 5.575380122622604 0.0 56 0.0 0.0 0.0 6.030558804466859 0.0 57 0.0 0.0 0.0 6.449978768261158 0.0 58 0.0 0.0 0.0 6.911862209739781 0.0 59 0.0 0.0 0.0 7.305953081582025 0.0 60 0.0 0.0 0.0 7.764111656597111 0.0 61 0.0 0.0 0.0 8.19172632661119 0.0 62 0.0 0.0 0.0 8.574642599062823 0.0 63 0.0 0.0 0.0 8.958303844807164 0.0 64 0.0 0.0 0.0 9.397838087504564 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGATA 15 0.0022206127 70.00001 21 CCGATAA 15 0.0022206127 70.00001 22 TTCCGAT 15 0.0022206127 70.00001 20 GGTATGA 15 0.0022206127 70.00001 1 GAACGAC 15 0.0022206127 70.00001 36 CAAGAAT 15 0.0022206127 70.00001 36 ACGCAGC 20 0.0069387313 52.5 39 TGCGCGA 20 0.0069387313 52.5 12 GTATCCA 20 0.0069387313 52.5 13 CGTTTGG 20 0.0069387313 52.5 28 ATGTGAC 30 5.8607565E-4 46.666668 16 GACGGAT 40 4.5730398E-5 43.75 7 GGACGGA 40 4.5730398E-5 43.75 6 ATTCCGA 35 0.0012518105 40.0 19 GGTATTG 35 0.0012518105 40.0 33 GGGCTAA 40 0.0024118526 35.0 6 GTCGGTT 40 0.0024118526 35.0 70 TCTAGTA 55 2.979486E-4 31.818184 3 ACGGATC 55 2.979486E-4 31.818184 8 CCTAGTC 45 0.004295044 31.111113 2 >>END_MODULE